Rorug04G0055800

Autophagy-related protein 11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0019418
Physical Location & Seq
Reverse (-)
8798160 .. 8802407
4248 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0055800.1

Sequence Viewer

Length: 612 bp
ATGGCGGCGATGGGAGCAAGAGGAGGTGGACTGGTGCTGCCAAAGCCGGTGACTTTTGTGACCGGAAACGCCAAGAAGCTCGAAGAAGTGCGCGCCATCTTGGGCACCTCCATTCCCTTCAACTCTCTCAAGCTCGATTTGCCAGAATTGCAAGGGGAGCCTGAGGACATCTCCAAAGAAAAGGCTAGGTTGGCTGCCATTCAGGTTAAGGGTCCTGTGCTTGTGGAAGACACTTGCCTCTGCTTCAATGCCCTCAAGGGTCTACCTGGGCCTTACATCAAGTGGTTCCTGCAGAAGATTGGACATGAAGGTCTCAACAATATGTTGATGGCATATGAGGATAAATCTGCATACGCTTTGTGCTCCTTTTCTTTTGCCATTGGGCCCAATGCTGAGCCTATTGCATTTCTGGGTAAAACTCCGGGGAAAATAGTTCCTGCAAGGGGACCAAATGATTTTGGATGGGATCCAATATTTCAACCTGATGGTTACGAGCAAACTTATGCCGAGATGTCAAAGGAAGAAAAGAACAAGATTTCTCATCGCTCTAGAGCTCTTGCACTAGTGAAGTCTCACTTTGCTGAAGCTGCATACACTTTTGAGACCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000045 GO:0000272 GO:0000407 GO:0000422 GO:0001932 GO:0001934 GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005776 GO:0005911 GO:0005975 GO:0005976 GO:0005977 GO:0005980 GO:0006073 GO:0006091 GO:0006112 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009506 GO:0009893 GO:0009987 GO:0010150 GO:0010562 GO:0010604 GO:0015980 GO:0016020 GO:0016043 GO:0016052 GO:0016236 GO:0019220 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0022411 GO:0022607 GO:0030054 GO:0030242 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032947 GO:0032991 GO:0034045 GO:0042325 GO:0042327 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0045937 GO:0046983 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0055044 GO:0055114 GO:0060255 GO:0061695 GO:0061709 GO:0061723 GO:0061726 GO:0061912 GO:0061919 GO:0065007 GO:0070925 GO:0071704 GO:0071840 GO:0080090 GO:0090693 GO:0098805 GO:0099402 GO:1901575 GO:1902494 GO:1902554 GO:1902911 GO:1903008 GO:1905037 GO:1990234 GO:1990316
KEGG Pathways
Metabolic & Signaling
ko04136 ko04138 ko04139 map04136 map04138 map04139
Pfam Domains
Protein Families
APG17 ATG11

Protein Analysis

203

Amino Acids

22.15

Weight (kDa)

6.84

Isoelectric Point (pI)

32.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ham1p_like PF01725 17 - 190 1.8e-53 Ham1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019418)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0033091
rosa_rugosa Rorug03G0249900 Rorug04G0055700 Rorug04G0055800 RorugPtG0003600
rosa_samantha Rh2AG071500 Rh2CG536000 Rh5AG228500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 309
AccB1I GGYRCC 1 cut(s) 104
AccI GTMKAC 1 cut(s) 262
AccII CGCG 1 cut(s) 93
AciI CCGC 1 cut(s) 5
AclWI GGATC 2 cut(s) 461, 474
AcuI CTGAAG 1 cut(s) 603
AfiI CCNNNNNNNGG 1 cut(s) 443
AgsI TTSAA 3 cut(s) 121, 247, 479
AhlI ACTAGT 1 cut(s) 562
AjnI CCWGG 1 cut(s) 265
AluBI AGCT 4 cut(s) 79, 133, 554, 587
AluI AGCT 4 cut(s) 79, 133, 554, 587
Alw21I GWGCWC 2 cut(s) 365, 556
Alw26I GTCTC 3 cut(s) 317, 576, 596
AlwI GGATC 2 cut(s) 461, 474
AoxI GGCC 2 cut(s) 269, 383
ApaI GGGCCC 1 cut(s) 387
ApeKI GCWGC 3 cut(s) 37, 194, 587
AspLEI GCGC 2 cut(s) 93, 95
AspS9I GGNCC 5 cut(s) 212, 269, 383, 384, 446
AsuC2I CCSGG 1 cut(s) 423
AsuHPI GGTGA 1 cut(s) 61
AvaII GGWCC 2 cut(s) 212, 446
AxyI CCTNAGG 1 cut(s) 162
BaeGI GKGCMC 2 cut(s) 107, 387
BamHI GGATCC 1 cut(s) 466
BanI GGYRCC 1 cut(s) 104
BanII GRGCYC 2 cut(s) 387, 556
BbsI GAAGAC 1 cut(s) 234
Bbv12I GWGCWC 2 cut(s) 365, 556
BbvI GCAGC 3 cut(s) 24, 181, 574
BccI CCATC 5 cut(s) 4, 104, 322, 456, 479
BciT130I CCWGG 1 cut(s) 267
BcnI CCSGG 1 cut(s) 423
BcoDI GTCTC 3 cut(s) 317, 576, 596
BcuI ACTAGT 1 cut(s) 562
BfaI CTAG 4 cut(s) 186, 549, 563, 610
BfmI CTRYAG 1 cut(s) 290
BisI GCNGC 4 cut(s) 6, 38, 195, 588
BlpI GCTNAGC 1 cut(s) 393
BlsI GCNGC 4 cut(s) 7, 39, 196, 589
Bme1390I CCNGG 2 cut(s) 267, 423
Bme18I GGWCC 2 cut(s) 212, 446
BmgT120I GGNCC 5 cut(s) 212, 269, 383, 384, 446
BmiI GGNNCC 7 cut(s) 106, 159, 213, 287, 385, 447, 468
BmrFI CCNGG 2 cut(s) 267, 423
BpiI GAAGAC 1 cut(s) 234
BplI GAGNNNNNCTC 2 cut(s) 155, 187
Bpu1102I GCTNAGC 1 cut(s) 393
BpuEI CTTGAG 2 cut(s) 113, 239
BpuMI CCSGG 1 cut(s) 423
BsaI GGTCTC 2 cut(s) 317, 596
BsaJI CCNNGG 2 cut(s) 266, 422
BsaWI WCCGGW 1 cut(s) 62
Bsc4I CCNNNNNNNGG 1 cut(s) 443
Bse118I RCCGGY 1 cut(s) 46
Bse1I ACTGG 1 cut(s) 36
Bse21I CCTNAGG 1 cut(s) 162
BseBI CCWGG 1 cut(s) 267
BseDI CCNNGG 2 cut(s) 266, 422
BseGI GGATG 1 cut(s) 467
BseLI CCNNNNNNNGG 1 cut(s) 443
BseMII CTCAG 2 cut(s) 153, 384
BseNI ACTGG 1 cut(s) 36
BsePI GCGCGC 1 cut(s) 91
BseRI GAGGAG 1 cut(s) 36
BseSI GKGCMC 2 cut(s) 107, 387
BseXI GCAGC 3 cut(s) 24, 181, 574
Bsh1236I CGCG 1 cut(s) 93
BshFI GGCC 2 cut(s) 271, 385
BshNI GGYRCC 1 cut(s) 104
BsiHKAI GWGCWC 2 cut(s) 365, 556
BsiSI CCGG 3 cut(s) 47, 63, 422
BslFI GGGAC 1 cut(s) 459
BslI CCNNNNNNNGG 1 cut(s) 443
BsmAI GTCTC 3 cut(s) 317, 576, 596
BsmFI GGGAC 1 cut(s) 459
BsnI GGCC 2 cut(s) 271, 385
Bso31I GGTCTC 2 cut(s) 317, 596
Bsp120I GGGCCC 1 cut(s) 383
Bsp1286I GDGCHC 4 cut(s) 107, 365, 387, 556
Bsp143I GATC 1 cut(s) 466
Bsp1720I GCTNAGC 1 cut(s) 393
BspACI CCGC 1 cut(s) 5
BspANI GGCC 2 cut(s) 271, 385
BspCNI CTCAG 2 cut(s) 154, 385
BspFNI CGCG 1 cut(s) 93
BspLI GGNNCC 7 cut(s) 106, 159, 213, 287, 385, 447, 468
BspMAI CTGCAG 1 cut(s) 294
BspPI GGATC 2 cut(s) 461, 474
BspT107I GGYRCC 1 cut(s) 104
BspTNI GGTCTC 2 cut(s) 317, 596
BsrFI RCCGGY 1 cut(s) 46
BsrI ACTGG 1 cut(s) 36
BssAI RCCGGY 1 cut(s) 46
BssECI CCNNGG 2 cut(s) 266, 422
BssHII GCGCGC 1 cut(s) 91
BssMI GATC 1 cut(s) 466
Bst2UI CCWGG 1 cut(s) 267
BstC8I GCNNGC 1 cut(s) 93
BstDEI CTNAG 2 cut(s) 162, 393
BstF5I GGATG 1 cut(s) 467
BstFNI CGCG 1 cut(s) 93
BstHHI GCGC 2 cut(s) 93, 95
BstKTI GATC 1 cut(s) 469
BstMAI GTCTC 3 cut(s) 317, 576, 596
BstMBI GATC 1 cut(s) 466
BstMWI GCNNNNNNNGC 7 cut(s) 14, 43, 139, 148, 157, 191, 587
BstNI CCWGG 1 cut(s) 267
BstSCI CCNGG 2 cut(s) 265, 421
BstSFI CTRYAG 1 cut(s) 290
BstSLI GKGCMC 2 cut(s) 107, 387
BstUI CGCG 1 cut(s) 93
BstV1I GCAGC 3 cut(s) 24, 181, 574
BstV2I GAAGAC 1 cut(s) 234
BstX2I RGATCY 1 cut(s) 466
BstYI RGATCY 1 cut(s) 466
Bsu36I CCTNAGG 1 cut(s) 162
BsuRI GGCC 2 cut(s) 271, 385
BtgZI GCGATG 2 cut(s) 23, 527
BtsCI GGATG 1 cut(s) 467
Cac8I GCNNGC 1 cut(s) 93
CfoI GCGC 2 cut(s) 93, 95
Cfr10I RCCGGY 1 cut(s) 46
Cfr13I GGNCC 5 cut(s) 212, 269, 383, 384, 446
CviAII CATG 1 cut(s) 305
DdeI CTNAG 2 cut(s) 162, 393
DpnI GATC 1 cut(s) 468
DpnII GATC 1 cut(s) 466
DrdI GACNNNNNNGTC 1 cut(s) 309
DseDI GACNNNNNNGTC 1 cut(s) 309
Ecl136II GAGCTC 1 cut(s) 554
Eco24I GRGCYC 2 cut(s) 387, 556
Eco31I GGTCTC 2 cut(s) 317, 596
Eco47I GGWCC 2 cut(s) 212, 446
Eco53kI GAGCTC 1 cut(s) 554
Eco57I CTGAAG 1 cut(s) 603
Eco81I CCTNAGG 1 cut(s) 162
EcoICRI GAGCTC 1 cut(s) 554
EcoO109I RGGNCCY 1 cut(s) 212
EcoRII CCWGG 1 cut(s) 265
EcoT38I GRGCYC 2 cut(s) 387, 556
FaeI CATG 1 cut(s) 308
FaiI YATR 7 cut(s) 306, 323, 334, 336, 352, 504, 592
FalI AAGNNNNNCTT 2 cut(s) 560, 592
FaqI GGGAC 1 cut(s) 459
FatI CATG 1 cut(s) 304
FauNDI CATATG 1 cut(s) 334
FblI GTMKAC 1 cut(s) 262
Fnu4HI GCNGC 4 cut(s) 6, 38, 195, 588
FokI GGATG 1 cut(s) 474
FriOI GRGCYC 2 cut(s) 387, 556
Fsp4HI GCNGC 4 cut(s) 6, 38, 195, 588
FspBI CTAG 4 cut(s) 186, 549, 563, 610
GlaI GCGC 2 cut(s) 92, 94
GluI GCNGC 4 cut(s) 6, 38, 195, 588
HaeIII GGCC 2 cut(s) 271, 385
HapII CCGG 3 cut(s) 47, 63, 422
HhaI GCGC 2 cut(s) 93, 95
Hin1II CATG 1 cut(s) 308
Hin6I GCGC 2 cut(s) 91, 93
HinP1I GCGC 2 cut(s) 91, 93
HpaII CCGG 3 cut(s) 47, 63, 422
HphI GGTGA 1 cut(s) 61
Hpy166II GTNNAC 2 cut(s) 29, 263
Hpy188III TCNNGA 1 cut(s) 549
Hpy8I GTNNAC 2 cut(s) 29, 263
HpyAV CCTTC 2 cut(s) 127, 302
HpyCH4V TGCA 7 cut(s) 151, 292, 350, 404, 440, 560, 590
HpyF10VI GCNNNNNNNGC 7 cut(s) 14, 43, 139, 148, 157, 191, 587
HpyF3I CTNAG 2 cut(s) 162, 393
Hsp92II CATG 1 cut(s) 308
HspAI GCGC 2 cut(s) 91, 93
Kzo9I GATC 1 cut(s) 466
LmnI GCTCC 3 cut(s) 14, 157, 368
Lsp1109I GCAGC 3 cut(s) 24, 181, 574
MaeI CTAG 4 cut(s) 186, 549, 563, 610
MaeIII GTNAC 3 cut(s) 49, 58, 488
MalI GATC 1 cut(s) 468
MboI GATC 1 cut(s) 466
MboII GAAGA 4 cut(s) 95, 239, 307, 533
MflI RGATCY 1 cut(s) 466
MhlI GDGCHC 4 cut(s) 107, 365, 387, 556
MluCI AATT 1 cut(s) 146
MnlI CCTC 7 cut(s) 14, 17, 118, 157, 248, 263, 331
MseI TTAA 1 cut(s) 207
MspI CCGG 3 cut(s) 47, 63, 422
MspR9I CCNGG 2 cut(s) 267, 423
MvaI CCWGG 1 cut(s) 267
MvnI CGCG 1 cut(s) 93
MwoI GCNNNNNNNGC 7 cut(s) 14, 43, 139, 148, 157, 191, 587
NciI CCSGG 1 cut(s) 423
NdeI CATATG 1 cut(s) 334
NdeII GATC 1 cut(s) 466
NlaIII CATG 1 cut(s) 308
NlaIV GGNNCC 7 cut(s) 106, 159, 213, 287, 385, 447, 468
NmeAIII GCCGAG 1 cut(s) 532
NmuCI GTSAC 2 cut(s) 49, 58
PauI GCGCGC 1 cut(s) 91
PkrI GCNGC 4 cut(s) 7, 39, 196, 589
PpuMI RGGWCCY 1 cut(s) 212
Psp124BI GAGCTC 1 cut(s) 556
Psp5II RGGWCCY 1 cut(s) 212
Psp6I CCWGG 1 cut(s) 265
PspGI CCWGG 1 cut(s) 265
PspN4I GGNNCC 7 cut(s) 106, 159, 213, 287, 385, 447, 468
PspOMI GGGCCC 1 cut(s) 383
PspPI GGNCC 5 cut(s) 212, 269, 383, 384, 446
PspPPI RGGWCCY 1 cut(s) 212
PstI CTGCAG 1 cut(s) 294
PsuI RGATCY 1 cut(s) 466
PteI GCGCGC 1 cut(s) 91
SacI GAGCTC 1 cut(s) 556
SaqAI TTAA 1 cut(s) 207
SatI GCNGC 4 cut(s) 6, 38, 195, 588
Sau3AI GATC 1 cut(s) 466
Sau96I GGNCC 5 cut(s) 212, 269, 383, 384, 446
ScrFI CCNGG 2 cut(s) 267, 423
SduI GDGCHC 4 cut(s) 107, 365, 387, 556
SfcI CTRYAG 1 cut(s) 290
SinI GGWCC 2 cut(s) 212, 446
SmlI CTYRAG 2 cut(s) 128, 254
SmoI CTYRAG 2 cut(s) 128, 254
SpeI ACTAGT 1 cut(s) 562
Sse9I AATT 1 cut(s) 146
SsiI CCGC 1 cut(s) 5
SspI AATATT 1 cut(s) 474
SspMI CTAG 4 cut(s) 186, 549, 563, 610
SstI GAGCTC 1 cut(s) 556
StyD4I CCNGG 2 cut(s) 265, 421
TaqI TCGA 2 cut(s) 81, 135
TasI AATT 1 cut(s) 146
TauI GCSGC 1 cut(s) 8
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TseFI GTSAC 2 cut(s) 49, 58
TseI GCWGC 3 cut(s) 37, 194, 587
Tsp45I GTSAC 2 cut(s) 49, 58
TspDTI ATGAA 1 cut(s) 321
VpaK11BI GGWCC 2 cut(s) 212, 446
XbaI TCTAGA 1 cut(s) 548
XmiI GTMKAC 1 cut(s) 262
XspI CTAG 4 cut(s) 186, 549, 563, 610
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.