Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0021444

Physical Location & Seq

Genomic Coordinates Reverse (-)

30025832 .. 30027048

Gene Structure 1217 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGACACATAGCTGGACTTTGCGGTTTCTGCGATTATTGGGAACATTTTCTCTACGATCTTCACCTTCTTCTTTGCTTTGGTTTTTGTCTTTCTTGGCTGATGTGGGCACCTTGTTGGGATCTCTAACTGGAGCTTTGATAGGACAAGAAACCGAGAGCGGATTTGTTTGGGGTGCTGCTATTGGAGCAATCTCAAGAGGTGCTTTCTCCATTGAAGTGTTTGAATCTTCCCTTATTCTATGGCAATCAGATGAATCCAGAATTGGTTGTCTTCTCTACTTGATTGATGTCATTGCGAGTCTCCTAAGTGGTAGATTAGTATGCGAGCGAATTGGTCCAGCCATGTTTGAGTGCAGTGCAAAGTCAGGCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004656 GO:0006082 GO:0006464 GO:0006520 GO:0006575 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016491 GO:0016705 GO:0016706 GO:0018126 GO:0018193 GO:0018208 GO:0018401 GO:0019471 GO:0019511 GO:0019538 GO:0019752 GO:0019798 GO:0031543 GO:0031545 GO:0036211 GO:0043170 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0051213 GO:0055114 GO:0071704 GO:0140096 GO:1901564 GO:1901605

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3

Protein Analysis

124

Amino Acids

13.43

Weight (kDa)

5.24

Isoelectric Point (pI)

49.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021444)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0035931
rosa_samantha	Rh2BG363200 Rh2CG340200 Rh4AG117400 Rh4DG355800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	107
AccBSI	CCGCTC	1 cut(s)	159
AciI	CCGC	2 cut(s)	22, 159
AclWI	GGATC	1 cut(s)	127
AgsI	TTSAA	2 cut(s)	215, 224
AjuI	GAANNNNNNNTTGG	2 cut(s)	246, 278
AluBI	AGCT	2 cut(s)	12, 134
AluI	AGCT	2 cut(s)	12, 134
Alw26I	GTCTC	1 cut(s)	305
AlwI	GGATC	1 cut(s)	127
ApeKI	GCWGC	1 cut(s)	176
Asp700I	GAANNNNTTC	1 cut(s)	46
AspS9I	GGNCC	1 cut(s)	335
AsuHPI	GGTGA	1 cut(s)	54
AvaII	GGWCC	1 cut(s)	335
BaeGI	GKGCMC	1 cut(s)	110
BanI	GGYRCC	1 cut(s)	107
BbsI	GAAGAC	1 cut(s)	263
BbvI	GCAGC	1 cut(s)	163
BcoDI	GTCTC	1 cut(s)	305
BisI	GCNGC	1 cut(s)	177
BlsI	GCNGC	1 cut(s)	178
Bme18I	GGWCC	1 cut(s)	335
BmgT120I	GGNCC	1 cut(s)	335
BmiI	GGNNCC	1 cut(s)	109
BpiI	GAAGAC	1 cut(s)	263
BpmI	CTGGAG	1 cut(s)	150
BpuEI	CTTGAG	1 cut(s)	178
Bse1I	ACTGG	1 cut(s)	133
Bse3DI	GCAATG	1 cut(s)	291
BseMI	GCAATG	1 cut(s)	291
BseNI	ACTGG	1 cut(s)	133
BseSI	GKGCMC	1 cut(s)	110
BseXI	GCAGC	1 cut(s)	163
BsgI	GTGCAG	1 cut(s)	373
BshNI	GGYRCC	1 cut(s)	107
BsmAI	GTCTC	1 cut(s)	305
Bsp1286I	GDGCHC	1 cut(s)	110
Bsp143I	GATC	2 cut(s)	56, 119
BspACI	CCGC	2 cut(s)	22, 159
BspLI	GGNNCC	1 cut(s)	109
BspPI	GGATC	1 cut(s)	127
BspT107I	GGYRCC	1 cut(s)	107
BsrBI	CCGCTC	1 cut(s)	159
BsrDI	GCAATG	1 cut(s)	291
BsrI	ACTGG	1 cut(s)	133
BssMI	GATC	2 cut(s)	56, 119
BstC8I	GCNNGC	1 cut(s)	326
BstDEI	CTNAG	1 cut(s)	305
BstKTI	GATC	2 cut(s)	59, 122
BstMAI	GTCTC	1 cut(s)	305
BstMBI	GATC	2 cut(s)	56, 119
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 185
BstSLI	GKGCMC	1 cut(s)	110
BstV1I	GCAGC	1 cut(s)	163
BstV2I	GAAGAC	1 cut(s)	263
BstX2I	RGATCY	1 cut(s)	119
BstYI	RGATCY	1 cut(s)	119
BtsI	GCAGTG	1 cut(s)	361
BtsIMutI	CAGTG	1 cut(s)	361
Cac8I	GCNNGC	1 cut(s)	326
Cfr13I	GGNCC	1 cut(s)	335
CviAII	CATG	1 cut(s)	343
CviJI	RGCY	5 cut(s)	12, 98, 134, 341, 369
CviKI_1	RGCY	5 cut(s)	12, 98, 134, 341, 369
DdeI	CTNAG	1 cut(s)	305
DpnI	GATC	2 cut(s)	58, 121
DpnII	GATC	2 cut(s)	56, 119
Eco47I	GGWCC	1 cut(s)	335
FaeI	CATG	1 cut(s)	346
FaiI	YATR	4 cut(s)	9, 241, 322, 344
FalI	AAGNNNNNCTT	2 cut(s)	187, 219
FatI	CATG	1 cut(s)	342
Fnu4HI	GCNGC	1 cut(s)	177
Fsp4HI	GCNGC	1 cut(s)	177
GluI	GCNGC	1 cut(s)	177
GsuI	CTGGAG	1 cut(s)	150
Hin1II	CATG	1 cut(s)	346
HinfI	GANTC	3 cut(s)	224, 254, 298
HphI	GGTGA	1 cut(s)	54
Hpy188I	TCNGA	1 cut(s)	250
Hpy188III	TCNNGA	2 cut(s)	195, 258
HpyAV	CCTTC	1 cut(s)	75
HpyCH4V	TGCA	2 cut(s)	354, 359
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 185
HpyF3I	CTNAG	1 cut(s)	305
Hsp92II	CATG	1 cut(s)	346
Kzo9I	GATC	2 cut(s)	56, 119
LmnI	GCTCC	2 cut(s)	131, 185
LpnPI	CCDG	4 cut(s)	114, 271, 351, 351
Lsp1109I	GCAGC	1 cut(s)	163
MalI	GATC	2 cut(s)	58, 121
MbiI	CCGCTC	1 cut(s)	159
MboI	GATC	2 cut(s)	56, 119
MboII	GAAGA	4 cut(s)	51, 60, 219, 263
MflI	RGATCY	1 cut(s)	119
MhlI	GDGCHC	1 cut(s)	110
MluCI	AATT	2 cut(s)	261, 330
MlyI	GAGTC	1 cut(s)	307
MnlI	CCTC	1 cut(s)	191
MroXI	GAANNNNTTC	1 cut(s)	46
MslI	CAYNNNNRTG	1 cut(s)	215
MwoI	GCNNNNNNNGC	2 cut(s)	28, 185
NdeII	GATC	2 cut(s)	56, 119
NlaIII	CATG	1 cut(s)	346
NlaIV	GGNNCC	1 cut(s)	109
PdmI	GAANNNNTTC	1 cut(s)	46
PfeI	GAWTC	2 cut(s)	224, 254
PkrI	GCNGC	1 cut(s)	178
PleI	GAGTC	1 cut(s)	306
PpsI	GAGTC	1 cut(s)	306
PspN4I	GGNNCC	1 cut(s)	109
PspPI	GGNCC	1 cut(s)	335
PsuI	RGATCY	1 cut(s)	119
RseI	CAYNNNNRTG	1 cut(s)	215
SatI	GCNGC	1 cut(s)	177
Sau3AI	GATC	2 cut(s)	56, 119
Sau96I	GGNCC	1 cut(s)	335
SchI	GAGTC	1 cut(s)	307
SduI	GDGCHC	1 cut(s)	110
SetI	ASST	5 cut(s)	14, 67, 113, 136, 202
SinI	GGWCC	1 cut(s)	335
SmiMI	CAYNNNNRTG	1 cut(s)	215
SmlI	CTYRAG	1 cut(s)	193
SmoI	CTYRAG	1 cut(s)	193
Sse9I	AATT	2 cut(s)	261, 330
SsiI	CCGC	2 cut(s)	22, 159
TasI	AATT	2 cut(s)	261, 330
TfiI	GAWTC	2 cut(s)	224, 254
TscAI	CASTG	1 cut(s)	361
TseI	GCWGC	1 cut(s)	176
TspDTI	ATGAA	1 cut(s)	267
TspRI	CASTG	1 cut(s)	361
VpaK11BI	GGWCC	1 cut(s)	335
XmnI	GAANNNNTTC	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.