Rh4AG117400

prolyl 4-hydroxylase 10

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Forward (+)
25246298 .. 25246495
198 bp
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UTR
Exon/CDS
Intron
Rh4AG117400.1

Sequence Viewer

Length: 198 bp
ATGACATTTTTGTGTGCAGTGGGCACCTTGCTGGGATCTCTAACTAGAGCTTTGATAGGACAAGAAACCGAGAGCGGATTTGTTTGGGGTGCTGTTGTTGGAGCAATCTCAAGAGGTGTTTTCTCCATTGAAGTGTTTGAATCTTCCCTTATTCTATGGCAATCAGATGAATCCGGAATTGGTTGTCTTCTCTACTTG

Protein Analysis

66

Amino Acids

7.0

Weight (kDa)

4.14

Isoelectric Point (pI)

43.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0021444)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0035931
rosa_samantha Rh2BG363200 Rh2CG340200 Rh4AG117400 Rh4DG355800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 23
AccBSI CCGCTC 1 cut(s) 75
AccIII TCCGGA 1 cut(s) 173
AciI CCGC 1 cut(s) 75
AclWI GGATC 1 cut(s) 43
AgsI TTSAA 2 cut(s) 131, 140
AjuI GAANNNNNNNTTGG 2 cut(s) 162, 194
AluBI AGCT 1 cut(s) 50
AluI AGCT 1 cut(s) 50
AlwI GGATC 1 cut(s) 43
Aor13HI TCCGGA 1 cut(s) 173
BaeGI GKGCMC 1 cut(s) 26
BanI GGYRCC 1 cut(s) 23
BbsI GAAGAC 1 cut(s) 179
BfaI CTAG 1 cut(s) 45
BmiI GGNNCC 1 cut(s) 25
BpiI GAAGAC 1 cut(s) 179
BpuEI CTTGAG 1 cut(s) 94
BsaWI WCCGGW 1 cut(s) 173
BseAI TCCGGA 1 cut(s) 173
BseSI GKGCMC 1 cut(s) 26
BseYI CCCAGC 1 cut(s) 31
BsgI GTGCAG 1 cut(s) 36
BshNI GGYRCC 1 cut(s) 23
BsiSI CCGG 1 cut(s) 174
Bsp1286I GDGCHC 1 cut(s) 26
Bsp13I TCCGGA 1 cut(s) 173
Bsp143I GATC 1 cut(s) 35
BspACI CCGC 1 cut(s) 75
BspEI TCCGGA 1 cut(s) 173
BspLI GGNNCC 1 cut(s) 25
BspPI GGATC 1 cut(s) 43
BspT107I GGYRCC 1 cut(s) 23
BsrBI CCGCTC 1 cut(s) 75
BssMI GATC 1 cut(s) 35
BstKTI GATC 1 cut(s) 38
BstMBI GATC 1 cut(s) 35
BstSLI GKGCMC 1 cut(s) 26
BstV2I GAAGAC 1 cut(s) 179
BstX2I RGATCY 1 cut(s) 35
BstYI RGATCY 1 cut(s) 35
BtsI GCAGTG 1 cut(s) 24
BtsIMutI CAGTG 1 cut(s) 24
CviJI RGCY 1 cut(s) 50
CviKI_1 RGCY 1 cut(s) 50
DpnI GATC 1 cut(s) 37
DpnII GATC 1 cut(s) 35
FaiI YATR 1 cut(s) 157
FspBI CTAG 1 cut(s) 45
GsaI CCCAGC 1 cut(s) 35
HapII CCGG 1 cut(s) 174
HinfI GANTC 2 cut(s) 140, 170
HpaII CCGG 1 cut(s) 174
Hpy188I TCNGA 1 cut(s) 166
Hpy188III TCNNGA 2 cut(s) 111, 174
HpyCH4V TGCA 1 cut(s) 17
Kpn2I TCCGGA 1 cut(s) 173
Kzo9I GATC 1 cut(s) 35
LmnI GCTCC 1 cut(s) 101
LpnPI CCDG 2 cut(s) 17, 187
MaeI CTAG 1 cut(s) 45
MalI GATC 1 cut(s) 37
MbiI CCGCTC 1 cut(s) 75
MboI GATC 1 cut(s) 35
MboII GAAGA 2 cut(s) 135, 179
MflI RGATCY 1 cut(s) 35
MhlI GDGCHC 1 cut(s) 26
MluCI AATT 1 cut(s) 177
MmeI TCCRAC 1 cut(s) 79
MnlI CCTC 1 cut(s) 107
MroI TCCGGA 1 cut(s) 173
MslI CAYNNNNRTG 2 cut(s) 10, 131
MspI CCGG 1 cut(s) 174
NdeII GATC 1 cut(s) 35
NlaIV GGNNCC 1 cut(s) 25
PfeI GAWTC 2 cut(s) 140, 170
PspFI CCCAGC 1 cut(s) 31
PspN4I GGNNCC 1 cut(s) 25
PsuI RGATCY 1 cut(s) 35
RseI CAYNNNNRTG 2 cut(s) 10, 131
Sau3AI GATC 1 cut(s) 35
SduI GDGCHC 1 cut(s) 26
SetI ASST 3 cut(s) 29, 52, 118
SgeI CNNG 7 cut(s) 40, 44, 57, 74, 82, 123, 186
SmiMI CAYNNNNRTG 2 cut(s) 10, 131
SmlI CTYRAG 1 cut(s) 109
SmoI CTYRAG 1 cut(s) 109
Sse9I AATT 1 cut(s) 177
SsiI CCGC 1 cut(s) 75
SspMI CTAG 1 cut(s) 45
TasI AATT 1 cut(s) 177
TfiI GAWTC 2 cut(s) 140, 170
TscAI CASTG 1 cut(s) 24
TspDTI ATGAA 1 cut(s) 183
TspRI CASTG 1 cut(s) 24
XspI CTAG 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.