Rh4DG355800

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Reverse (-)
57723614 .. 57723898
285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG355800.1

Sequence Viewer

Length: 285 bp
ATGCAGCAAGTGGACGAAGCTCAGGCTTCCTCCTCACTTAGTGTGCCTCCAGGTTTTCGGAAACCTTTGTTGGGAAAAGAACAAGAGATTATTCCATCAGATGAAGTGAGTTCTGCTGGGGTTAACATGGTAGACTTGGAGGAAGGAGAGTTCACTCCAGTAGTCTCCAAGAAAAATAAAAAGTTGCTTAAGCAAGCTGCAACTTTGAAGCCTAAGGTAGCAGCACGTAAAAATCAGTCAGTGTGTGCTCTCTACAAGGGGGCAAAACAAAAGCTTTATCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.23

Weight (kDa)

9.44

Isoelectric Point (pI)

32.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021444)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0035931
rosa_samantha Rh2BG363200 Rh2CG340200 Rh4AG117400 Rh4DG355800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 132
AdeI CACNNNGTG 1 cut(s) 41
AfiI CCNNNNNNNGG 1 cut(s) 71
AflII CTTAAG 1 cut(s) 188
AgsI TTSAA 1 cut(s) 208
AjnI CCWGG 1 cut(s) 49
AjuI GAANNNNNNNTTGG 2 cut(s) 53, 85
AloI GAACNNNNNNTCC 2 cut(s) 134, 166
AluBI AGCT 3 cut(s) 20, 197, 274
AluI AGCT 3 cut(s) 20, 197, 274
Alw21I GWGCWC 1 cut(s) 250
Alw26I GTCTC 1 cut(s) 169
ApeKI GCWGC 3 cut(s) 4, 197, 221
AxyI CCTNAGG 1 cut(s) 213
Bbv12I GWGCWC 1 cut(s) 250
BbvI GCAGC 3 cut(s) 16, 184, 233
BccI CCATC 1 cut(s) 103
BciT130I CCWGG 1 cut(s) 51
BcoDI GTCTC 1 cut(s) 169
BfrI CTTAAG 1 cut(s) 188
BisI GCNGC 3 cut(s) 5, 198, 222
BlsI GCNGC 3 cut(s) 6, 199, 223
Bme1390I CCNGG 1 cut(s) 51
BmrFI CCNGG 1 cut(s) 51
BpmI CTGGAG 2 cut(s) 33, 141
Bpu10I CCTNAGC 1 cut(s) 21
BsaAI YACGTR 1 cut(s) 227
Bsc4I CCNNNNNNNGG 1 cut(s) 71
Bse1I ACTGG 1 cut(s) 158
Bse21I CCTNAGG 1 cut(s) 213
BseBI CCWGG 1 cut(s) 51
BseLI CCNNNNNNNGG 1 cut(s) 71
BseMII CTCAG 1 cut(s) 35
BseNI ACTGG 1 cut(s) 158
BseRI GAGGAG 1 cut(s) 22
BseXI GCAGC 3 cut(s) 16, 184, 233
BseYI CCCAGC 1 cut(s) 116
BsiHKAI GWGCWC 1 cut(s) 250
BslI CCNNNNNNNGG 1 cut(s) 71
BsmAI GTCTC 1 cut(s) 169
Bsp1286I GDGCHC 1 cut(s) 250
BspCNI CTCAG 1 cut(s) 34
BspTI CTTAAG 1 cut(s) 188
BsrI ACTGG 1 cut(s) 158
Bst2UI CCWGG 1 cut(s) 51
BstAFI CTTAAG 1 cut(s) 188
BstBAI YACGTR 1 cut(s) 227
BstC8I GCNNGC 1 cut(s) 195
BstDEI CTNAG 3 cut(s) 21, 38, 213
BstMAI GTCTC 1 cut(s) 169
BstNI CCWGG 1 cut(s) 51
BstSCI CCNGG 1 cut(s) 49
BstV1I GCAGC 3 cut(s) 16, 184, 233
Bsu36I CCTNAGG 1 cut(s) 213
BtsIMutI CAGTG 1 cut(s) 246
Cac8I GCNNGC 1 cut(s) 195
CviAII CATG 1 cut(s) 127
CviJI RGCY 5 cut(s) 20, 26, 197, 211, 274
CviKI_1 RGCY 5 cut(s) 20, 26, 197, 211, 274
DdeI CTNAG 3 cut(s) 21, 38, 213
DraIII CACNNNGTG 1 cut(s) 41
Eco81I CCTNAGG 1 cut(s) 213
EcoRII CCWGG 1 cut(s) 49
FaeI CATG 1 cut(s) 130
FaiI YATR 1 cut(s) 128
FatI CATG 1 cut(s) 126
FblI GTMKAC 1 cut(s) 132
Fnu4HI GCNGC 3 cut(s) 5, 198, 222
Fsp4HI GCNGC 3 cut(s) 5, 198, 222
GluI GCNGC 3 cut(s) 5, 198, 222
GsaI CCCAGC 1 cut(s) 120
GsuI CTGGAG 2 cut(s) 33, 141
Hin1II CATG 1 cut(s) 130
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HindIII AAGCTT 1 cut(s) 272
HpaI GTTAAC 1 cut(s) 124
Hpy166II GTNNAC 4 cut(s) 13, 124, 133, 153
Hpy188I TCNGA 2 cut(s) 60, 100
Hpy8I GTNNAC 4 cut(s) 13, 124, 133, 153
HpyAV CCTTC 1 cut(s) 137
HpyCH4IV ACGT 1 cut(s) 226
HpyCH4V TGCA 2 cut(s) 4, 200
HpyF3I CTNAG 3 cut(s) 21, 38, 213
HpySE526I ACGT 1 cut(s) 226
Hsp92II CATG 1 cut(s) 130
KspAI GTTAAC 1 cut(s) 124
LpnPI CCDG 5 cut(s) 8, 36, 63, 102, 171
Lsp1109I GCAGC 3 cut(s) 16, 184, 233
MaeII ACGT 1 cut(s) 226
MhlI GDGCHC 1 cut(s) 250
MnlI CCTC 4 cut(s) 40, 43, 57, 133
MseI TTAA 2 cut(s) 123, 189
MspCI CTTAAG 1 cut(s) 188
MspR9I CCNGG 1 cut(s) 51
MvaI CCWGG 1 cut(s) 51
NlaIII CATG 1 cut(s) 130
PkrI GCNGC 3 cut(s) 6, 199, 223
Ppu21I YACGTR 1 cut(s) 227
Psp6I CCWGG 1 cut(s) 49
PspFI CCCAGC 1 cut(s) 116
PspGI CCWGG 1 cut(s) 49
SaqAI TTAA 2 cut(s) 123, 189
SatI GCNGC 3 cut(s) 5, 198, 222
ScrFI CCNGG 1 cut(s) 51
SduI GDGCHC 1 cut(s) 250
SetI ASST 7 cut(s) 22, 55, 67, 199, 219, 229, 276
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
StyD4I CCNGG 1 cut(s) 49
TaiI ACGT 1 cut(s) 229
Tru1I TTAA 2 cut(s) 123, 189
Tru9I TTAA 2 cut(s) 123, 189
TscAI CASTG 1 cut(s) 246
TseI GCWGC 3 cut(s) 4, 197, 221
TspDTI ATGAA 1 cut(s) 117
TspRI CASTG 1 cut(s) 246
Vha464I CTTAAG 1 cut(s) 188
XmiI GTMKAC 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.