Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0021444

Physical Location & Seq

Genomic Coordinates Forward (+)

50332057 .. 50337963

Gene Structure 5907 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG363200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGCAGCAAGTGGAAGAAGTTCAGGCTTCCTCCTCGCTTAGTGTGCCTCCAAGTTTTCAAAAACCTTTGCTGGGAACAGAACAAGTGAGTAATTCCCCAGATGAAGTGAGTACAGCTGGTGTTAACACGATAGAATTGGAGGAGGGAGAGTTCACTCCAGTCATCTCCAAGAAAAATAAAAAACTACTTAAAGTGGCTACAAAGCCTAAGGCAACAACACTTTCTGCGATTATTGGGAACATTTTCTTTGCGATCTTCACCTTCTTCTTTGCTTTGGTGGGTACCTTGTTGGGATCTCTGACTAGAGCTTTGATAGGACAAGAAACAGAGAATGAATCCGGAATTGGTCGTCTTCTGTACTTGATTGATGTCATTGCGAGTCTCCTAAGTGGTAGATTAGTACGCGAGCGAATTGGTCCAGCCATGTTTGAGTGCAGTGCAAAGTCAGGCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gly-zipper_Omp Gly-zipper_OmpA Gly-zipper_YMGG zf-RING_2

Protein Analysis

151

Amino Acids

16.24

Weight (kDa)

5.55

Isoelectric Point (pI)

35.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021444)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0035931
rosa_samantha	Rh2BG363200 Rh2CG340200 Rh4AG117400 Rh4DG355800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	281
AccB1I	GGYRCC	1 cut(s)	281
AccII	CGCG	1 cut(s)	405
AccIII	TCCGGA	1 cut(s)	338
AclWI	GGATC	1 cut(s)	301
AfaI	GTAC	4 cut(s)	112, 283, 359, 402
AfiI	CCNNNNNNNGG	1 cut(s)	71
AgsI	TTSAA	1 cut(s)	59
AjuI	GAANNNNNNNTTGG	2 cut(s)	327, 359
AloI	GAACNNNNNNTCC	2 cut(s)	134, 166
AluBI	AGCT	2 cut(s)	116, 308
AluI	AGCT	2 cut(s)	116, 308
Alw26I	GTCTC	1 cut(s)	386
AlwI	GGATC	1 cut(s)	301
Aor13HI	TCCGGA	1 cut(s)	338
ApeKI	GCWGC	1 cut(s)	4
ArsI	GACNNNNNNTTYG	2 cut(s)	292, 324
Asp700I	GAANNNNTTC	2 cut(s)	18, 242
Asp718I	GGTACC	1 cut(s)	281
AspS9I	GGNCC	1 cut(s)	416
AsuHPI	GGTGA	1 cut(s)	250
AvaII	GGWCC	1 cut(s)	416
AxyI	CCTNAGG	1 cut(s)	207
BanI	GGYRCC	1 cut(s)	281
BbsI	GAAGAC	1 cut(s)	344
BbvI	GCAGC	1 cut(s)	16
BcoDI	GTCTC	1 cut(s)	386
BfaI	CTAG	1 cut(s)	303
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
Bme18I	GGWCC	1 cut(s)	416
BmgT120I	GGNCC	1 cut(s)	416
BmiI	GGNNCC	1 cut(s)	283
BpiI	GAAGAC	1 cut(s)	344
BpmI	CTGGAG	1 cut(s)	141
BsaWI	WCCGGW	1 cut(s)	338
BsaXI	ACNNNNNCTCC	2 cut(s)	134, 164
Bsc4I	CCNNNNNNNGG	1 cut(s)	71
Bse1I	ACTGG	1 cut(s)	158
Bse21I	CCTNAGG	1 cut(s)	207
Bse3DI	GCAATG	1 cut(s)	372
BseAI	TCCGGA	1 cut(s)	338
BseLI	CCNNNNNNNGG	1 cut(s)	71
BseMI	GCAATG	1 cut(s)	372
BseNI	ACTGG	1 cut(s)	158
BseRI	GAGGAG	2 cut(s)	22, 155
BseXI	GCAGC	1 cut(s)	16
BseYI	CCCAGC	1 cut(s)	70
BsgI	GTGCAG	1 cut(s)	454
Bsh1236I	CGCG	1 cut(s)	405
BshNI	GGYRCC	1 cut(s)	281
BsiSI	CCGG	1 cut(s)	339
BslI	CCNNNNNNNGG	1 cut(s)	71
BsmAI	GTCTC	1 cut(s)	386
Bsp13I	TCCGGA	1 cut(s)	338
Bsp143I	GATC	2 cut(s)	252, 293
BspEI	TCCGGA	1 cut(s)	338
BspFNI	CGCG	1 cut(s)	405
BspLI	GGNNCC	1 cut(s)	283
BspPI	GGATC	1 cut(s)	301
BspT107I	GGYRCC	1 cut(s)	281
BsrDI	GCAATG	1 cut(s)	372
BsrI	ACTGG	1 cut(s)	158
BssMI	GATC	2 cut(s)	252, 293
BstC8I	GCNNGC	1 cut(s)	407
BstDEI	CTNAG	3 cut(s)	38, 207, 386
BstFNI	CGCG	1 cut(s)	405
BstKTI	GATC	2 cut(s)	255, 296
BstMAI	GTCTC	1 cut(s)	386
BstMBI	GATC	2 cut(s)	252, 293
BstMWI	GCNNNNNNNGC	1 cut(s)	43
BstUI	CGCG	1 cut(s)	405
BstV1I	GCAGC	1 cut(s)	16
BstV2I	GAAGAC	1 cut(s)	344
BstX2I	RGATCY	1 cut(s)	293
BstYI	RGATCY	1 cut(s)	293
Bsu36I	CCTNAGG	1 cut(s)	207
BtsI	GCAGTG	1 cut(s)	442
BtsIMutI	CAGTG	1 cut(s)	442
Cac8I	GCNNGC	1 cut(s)	407
Cfr13I	GGNCC	1 cut(s)	416
Csp6I	GTAC	4 cut(s)	111, 282, 358, 401
CviAII	CATG	1 cut(s)	424
CviJI	RGCY	7 cut(s)	26, 116, 197, 205, 308, 422, 450
CviKI_1	RGCY	7 cut(s)	26, 116, 197, 205, 308, 422, 450
CviQI	GTAC	4 cut(s)	111, 282, 358, 401
DdeI	CTNAG	3 cut(s)	38, 207, 386
DpnI	GATC	2 cut(s)	254, 295
DpnII	GATC	2 cut(s)	252, 293
Eco47I	GGWCC	1 cut(s)	416
Eco81I	CCTNAGG	1 cut(s)	207
FaeI	CATG	1 cut(s)	427
FaiI	YATR	1 cut(s)	425
FatI	CATG	1 cut(s)	423
Fnu4HI	GCNGC	1 cut(s)	5
Fsp4HI	GCNGC	1 cut(s)	5
FspBI	CTAG	1 cut(s)	303
GluI	GCNGC	1 cut(s)	5
GsaI	CCCAGC	1 cut(s)	74
GsuI	CTGGAG	1 cut(s)	141
HapII	CCGG	1 cut(s)	339
Hin1II	CATG	1 cut(s)	427
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HinfI	GANTC	2 cut(s)	335, 379
HpaI	GTTAAC	1 cut(s)	124
HpaII	CCGG	1 cut(s)	339
HphI	GGTGA	1 cut(s)	250
Hpy166II	GTNNAC	2 cut(s)	124, 153
Hpy188I	TCNGA	1 cut(s)	300
Hpy188III	TCNNGA	1 cut(s)	339
Hpy8I	GTNNAC	2 cut(s)	124, 153
HpyAV	CCTTC	1 cut(s)	271
HpyCH4V	TGCA	3 cut(s)	4, 435, 440
HpyF10VI	GCNNNNNNNGC	1 cut(s)	43
HpyF3I	CTNAG	3 cut(s)	38, 207, 386
Hsp92II	CATG	1 cut(s)	427
Kpn2I	TCCGGA	1 cut(s)	338
KpnI	GGTACC	1 cut(s)	285
KspAI	GTTAAC	1 cut(s)	124
Kzo9I	GATC	2 cut(s)	252, 293
LpnPI	CCDG	8 cut(s)	8, 56, 102, 111, 171, 352, 432, 432
Lsp1109I	GCAGC	1 cut(s)	16
MaeI	CTAG	1 cut(s)	303
MalI	GATC	2 cut(s)	254, 295
MboI	GATC	2 cut(s)	252, 293
MboII	GAAGA	4 cut(s)	26, 247, 256, 344
MflI	RGATCY	1 cut(s)	293
MluCI	AATT	4 cut(s)	91, 134, 342, 411
MlyI	GAGTC	1 cut(s)	388
MnlI	CCTC	5 cut(s)	40, 43, 57, 133, 136
MroI	TCCGGA	1 cut(s)	338
MroXI	GAANNNNTTC	2 cut(s)	18, 242
MseI	TTAA	2 cut(s)	123, 189
MspA1I	CMGCKG	1 cut(s)	116
MspI	CCGG	1 cut(s)	339
MvnI	CGCG	1 cut(s)	405
MwoI	GCNNNNNNNGC	1 cut(s)	43
NdeII	GATC	2 cut(s)	252, 293
NlaIII	CATG	1 cut(s)	427
NlaIV	GGNNCC	1 cut(s)	283
PdmI	GAANNNNTTC	2 cut(s)	18, 242
PfeI	GAWTC	1 cut(s)	335
PkrI	GCNGC	1 cut(s)	6
PleI	GAGTC	1 cut(s)	387
PpsI	GAGTC	1 cut(s)	387
PspFI	CCCAGC	1 cut(s)	70
PspN4I	GGNNCC	1 cut(s)	283
PspPI	GGNCC	1 cut(s)	416
PsuI	RGATCY	1 cut(s)	293
PvuII	CAGCTG	1 cut(s)	116
RsaI	GTAC	4 cut(s)	112, 283, 359, 402
RsaNI	GTAC	4 cut(s)	111, 282, 358, 401
SaqAI	TTAA	2 cut(s)	123, 189
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	2 cut(s)	252, 293
Sau96I	GGNCC	1 cut(s)	416
SchI	GAGTC	1 cut(s)	388
SetI	ASST	5 cut(s)	67, 118, 263, 287, 310
SinI	GGWCC	1 cut(s)	416
Sse9I	AATT	4 cut(s)	91, 134, 342, 411
SspMI	CTAG	1 cut(s)	303
TasI	AATT	4 cut(s)	91, 134, 342, 411
TatI	WGTACW	2 cut(s)	110, 357
TfiI	GAWTC	1 cut(s)	335
Tru1I	TTAA	2 cut(s)	123, 189
Tru9I	TTAA	2 cut(s)	123, 189
TscAI	CASTG	1 cut(s)	442
TseI	GCWGC	1 cut(s)	4
TspDTI	ATGAA	2 cut(s)	117, 348
TspRI	CASTG	1 cut(s)	442
VpaK11BI	GGWCC	1 cut(s)	416
XmnI	GAANNNNTTC	2 cut(s)	18, 242
XspI	CTAG	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.