Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0021444

Physical Location & Seq

Genomic Coordinates Forward (+)

45464232 .. 45464859

Gene Structure 628 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG340200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGACATTTTTGTGTGCAGTGGGTACCTTGTTGGGATCTCTGACTGGAGCTTTGATAGGACAAGAAACTGAGAGCAGATTTGTTAGGGGTGCTGCTGTTGGAGCAATCTCAAGAGCTGTTTTCTCCATTGAAGTGTTTGAATCTTCCCTTATTCTATGGCAATCAGATGATTCCGGAATTGGTCGTCTTCTCTACTTGATTGATGTCATTGCGAGTCTCCTAAGTGGTAGATTAGTACGCGAGCGAATTGGTCCAGCCATGTTTGAGTGCAGTGCAAAGTCAGGCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004656 GO:0006082 GO:0006464 GO:0006520 GO:0006575 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016491 GO:0016705 GO:0016706 GO:0018126 GO:0018193 GO:0018208 GO:0018401 GO:0019471 GO:0019511 GO:0019538 GO:0019752 GO:0019798 GO:0031543 GO:0031545 GO:0036211 GO:0043170 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0051213 GO:0055114 GO:0071704 GO:0140096 GO:1901564 GO:1901605

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3

Protein Analysis

96

Amino Acids

10.22

Weight (kDa)

5.25

Isoelectric Point (pI)

38.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021444)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0035931
rosa_samantha	Rh2BG363200 Rh2CG340200 Rh4AG117400 Rh4DG355800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	23
AccB1I	GGYRCC	1 cut(s)	23
AccII	CGCG	1 cut(s)	240
AccIII	TCCGGA	1 cut(s)	173
AclWI	GGATC	1 cut(s)	43
AfaI	GTAC	2 cut(s)	25, 237
AgsI	TTSAA	2 cut(s)	131, 140
AluBI	AGCT	2 cut(s)	50, 116
AluI	AGCT	2 cut(s)	50, 116
Alw26I	GTCTC	1 cut(s)	221
AlwI	GGATC	1 cut(s)	43
Aor13HI	TCCGGA	1 cut(s)	173
ApeKI	GCWGC	1 cut(s)	92
ArsI	GACNNNNNNTTYG	2 cut(s)	34, 66
Asp718I	GGTACC	1 cut(s)	23
AspS9I	GGNCC	1 cut(s)	251
AvaII	GGWCC	1 cut(s)	251
BanI	GGYRCC	1 cut(s)	23
BbsI	GAAGAC	1 cut(s)	179
BbvI	GCAGC	1 cut(s)	79
BcoDI	GTCTC	1 cut(s)	221
BisI	GCNGC	1 cut(s)	93
BlsI	GCNGC	1 cut(s)	94
Bme18I	GGWCC	1 cut(s)	251
BmgT120I	GGNCC	1 cut(s)	251
BmiI	GGNNCC	1 cut(s)	25
BpiI	GAAGAC	1 cut(s)	179
BpmI	CTGGAG	1 cut(s)	66
BpuEI	CTTGAG	1 cut(s)	94
BsaWI	WCCGGW	1 cut(s)	173
Bse1I	ACTGG	1 cut(s)	49
Bse3DI	GCAATG	1 cut(s)	207
BseAI	TCCGGA	1 cut(s)	173
BseMI	GCAATG	1 cut(s)	207
BseMII	CTCAG	1 cut(s)	60
BseNI	ACTGG	1 cut(s)	49
BseXI	GCAGC	1 cut(s)	79
BsgI	GTGCAG	2 cut(s)	36, 289
Bsh1236I	CGCG	1 cut(s)	240
BshNI	GGYRCC	1 cut(s)	23
BsiSI	CCGG	1 cut(s)	174
BsmAI	GTCTC	1 cut(s)	221
Bsp13I	TCCGGA	1 cut(s)	173
Bsp143I	GATC	1 cut(s)	35
BspCNI	CTCAG	1 cut(s)	61
BspEI	TCCGGA	1 cut(s)	173
BspFNI	CGCG	1 cut(s)	240
BspLI	GGNNCC	1 cut(s)	25
BspPI	GGATC	1 cut(s)	43
BspT107I	GGYRCC	1 cut(s)	23
BsrDI	GCAATG	1 cut(s)	207
BsrI	ACTGG	1 cut(s)	49
BssMI	GATC	1 cut(s)	35
BstC8I	GCNNGC	1 cut(s)	242
BstDEI	CTNAG	2 cut(s)	69, 221
BstFNI	CGCG	1 cut(s)	240
BstKTI	GATC	1 cut(s)	38
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	1 cut(s)	35
BstMWI	GCNNNNNNNGC	1 cut(s)	101
BstUI	CGCG	1 cut(s)	240
BstV1I	GCAGC	1 cut(s)	79
BstV2I	GAAGAC	1 cut(s)	179
BstX2I	RGATCY	1 cut(s)	35
BstYI	RGATCY	1 cut(s)	35
BtsI	GCAGTG	2 cut(s)	24, 277
BtsIMutI	CAGTG	2 cut(s)	24, 277
Cac8I	GCNNGC	1 cut(s)	242
Cfr13I	GGNCC	1 cut(s)	251
Csp6I	GTAC	2 cut(s)	24, 236
CviAII	CATG	1 cut(s)	259
CviJI	RGCY	4 cut(s)	50, 116, 257, 285
CviKI_1	RGCY	4 cut(s)	50, 116, 257, 285
CviQI	GTAC	2 cut(s)	24, 236
DdeI	CTNAG	2 cut(s)	69, 221
DpnI	GATC	1 cut(s)	37
DpnII	GATC	1 cut(s)	35
Eco47I	GGWCC	1 cut(s)	251
FaeI	CATG	1 cut(s)	262
FaiI	YATR	2 cut(s)	157, 260
FatI	CATG	1 cut(s)	258
Fnu4HI	GCNGC	1 cut(s)	93
Fsp4HI	GCNGC	1 cut(s)	93
GluI	GCNGC	1 cut(s)	93
GsuI	CTGGAG	1 cut(s)	66
HapII	CCGG	1 cut(s)	174
Hin1II	CATG	1 cut(s)	262
HinfI	GANTC	3 cut(s)	140, 170, 214
HpaII	CCGG	1 cut(s)	174
Hpy188I	TCNGA	2 cut(s)	42, 166
Hpy188III	TCNNGA	2 cut(s)	111, 174
HpyCH4V	TGCA	3 cut(s)	17, 270, 275
HpyF10VI	GCNNNNNNNGC	1 cut(s)	101
HpyF3I	CTNAG	2 cut(s)	69, 221
Hsp92II	CATG	1 cut(s)	262
Kpn2I	TCCGGA	1 cut(s)	173
KpnI	GGTACC	1 cut(s)	27
Kzo9I	GATC	1 cut(s)	35
LmnI	GCTCC	2 cut(s)	47, 101
LpnPI	CCDG	4 cut(s)	30, 187, 267, 267
Lsp1109I	GCAGC	1 cut(s)	79
MalI	GATC	1 cut(s)	37
MboI	GATC	1 cut(s)	35
MboII	GAAGA	2 cut(s)	135, 179
MflI	RGATCY	1 cut(s)	35
MluCI	AATT	2 cut(s)	177, 246
MlyI	GAGTC	1 cut(s)	223
MmeI	TCCRAC	1 cut(s)	79
MroI	TCCGGA	1 cut(s)	173
MslI	CAYNNNNRTG	2 cut(s)	10, 131
MspI	CCGG	1 cut(s)	174
MvnI	CGCG	1 cut(s)	240
MwoI	GCNNNNNNNGC	1 cut(s)	101
NdeII	GATC	1 cut(s)	35
NlaIII	CATG	1 cut(s)	262
NlaIV	GGNNCC	1 cut(s)	25
PfeI	GAWTC	2 cut(s)	140, 170
PkrI	GCNGC	1 cut(s)	94
PleI	GAGTC	1 cut(s)	222
PpsI	GAGTC	1 cut(s)	222
PspN4I	GGNNCC	1 cut(s)	25
PspPI	GGNCC	1 cut(s)	251
PsuI	RGATCY	1 cut(s)	35
RsaI	GTAC	2 cut(s)	25, 237
RsaNI	GTAC	2 cut(s)	24, 236
RseI	CAYNNNNRTG	2 cut(s)	10, 131
SatI	GCNGC	1 cut(s)	93
Sau3AI	GATC	1 cut(s)	35
Sau96I	GGNCC	1 cut(s)	251
SchI	GAGTC	1 cut(s)	223
SetI	ASST	3 cut(s)	29, 52, 118
SinI	GGWCC	1 cut(s)	251
SmiMI	CAYNNNNRTG	2 cut(s)	10, 131
SmlI	CTYRAG	1 cut(s)	109
SmoI	CTYRAG	1 cut(s)	109
Sse9I	AATT	2 cut(s)	177, 246
TasI	AATT	2 cut(s)	177, 246
TfiI	GAWTC	2 cut(s)	140, 170
TscAI	CASTG	2 cut(s)	24, 277
TseI	GCWGC	1 cut(s)	92
TspRI	CASTG	2 cut(s)	24, 277
VpaK11BI	GGWCC	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.