RchiOBHm_Chr5g0040611

Endoplasmin homolog

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
35266463 .. 35269038
2576 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 258 bp
ATGTACCAGATTGCTTTATGTTGGCTCTGGCCTACAGATTACCAAGTTTTGGGTGAAGATGATAACACTAAGCTCAAAATTCAGATTAAATTAGACAAAAGAGAGAGAATCATGTCCATACTTGATTGGGGTATAGGTATGACAAAGGAGGACTTGATCAAGAACTTGGAAACTATAGCAAAATCTGGAACTTCAGGTGCCACATGCCTCTACAAAACCTCAAAAAAAAAAAAAAAAAACTTTCAGTGTGGCAAATGA

Protein Analysis

85

Amino Acids

9.82

Weight (kDa)

9.32

Isoelectric Point (pI)

19.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 197
AccB7I CCANNNNNTGG 1 cut(s) 49
AcsI RAATTY 1 cut(s) 78
AcuI CTGAAG 1 cut(s) 177
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 49
AluBI AGCT 1 cut(s) 73
AluI AGCT 1 cut(s) 73
AoxI GGCC 1 cut(s) 29
ApoI RAATTY 1 cut(s) 78
AsuHPI GGTGA 1 cut(s) 65
BanI GGYRCC 1 cut(s) 197
BclI TGATCA 1 cut(s) 156
BfmI CTRYAG 2 cut(s) 33, 174
BmiI GGNNCC 1 cut(s) 199
Bsc4I CCNNNNNNNGG 1 cut(s) 49
BseLI CCNNNNNNNGG 1 cut(s) 49
BshFI GGCC 1 cut(s) 31
BshNI GGYRCC 1 cut(s) 197
BslI CCNNNNNNNGG 1 cut(s) 49
BsnI GGCC 1 cut(s) 31
Bsp143I GATC 1 cut(s) 156
BspANI GGCC 1 cut(s) 31
BspLI GGNNCC 1 cut(s) 199
BspT107I GGYRCC 1 cut(s) 197
BssMI GATC 1 cut(s) 156
BstDEI CTNAG 1 cut(s) 69
BstKTI GATC 1 cut(s) 159
BstMBI GATC 1 cut(s) 156
BstNSI RCATGY 1 cut(s) 207
BstSFI CTRYAG 2 cut(s) 33, 174
BsuRI GGCC 1 cut(s) 31
BtsIMutI CAGTG 1 cut(s) 251
Csp6I GTAC 1 cut(s) 4
CviAII CATG 2 cut(s) 112, 204
CviJI RGCY 3 cut(s) 25, 31, 73
CviKI_1 RGCY 3 cut(s) 25, 31, 73
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 1 cut(s) 69
DpnI GATC 1 cut(s) 158
DpnII GATC 1 cut(s) 156
Eco57I CTGAAG 1 cut(s) 177
FaeI CATG 2 cut(s) 115, 207
FaiI YATR 7 cut(s) 19, 113, 119, 134, 140, 176, 205
FalI AAGNNNNNCTT 2 cut(s) 137, 169
FatI CATG 2 cut(s) 111, 203
FbaI TGATCA 1 cut(s) 156
HaeIII GGCC 1 cut(s) 31
Hin1II CATG 2 cut(s) 115, 207
HinfI GANTC 1 cut(s) 108
HphI GGTGA 1 cut(s) 65
Hpy188I TCNGA 1 cut(s) 84
Hpy188III TCNNGA 2 cut(s) 160, 186
HpyF3I CTNAG 1 cut(s) 69
Hsp92II CATG 2 cut(s) 115, 207
Ksp22I TGATCA 1 cut(s) 156
Kzo9I GATC 1 cut(s) 156
LpnPI CCDG 4 cut(s) 13, 20, 171, 180
MalI GATC 1 cut(s) 158
MboI GATC 1 cut(s) 156
MboII GAAGA 1 cut(s) 68
MluCI AATT 2 cut(s) 78, 89
MnlI CCTC 3 cut(s) 142, 218, 229
MseI TTAA 1 cut(s) 87
NdeII GATC 1 cut(s) 156
NlaIII CATG 2 cut(s) 115, 207
NlaIV GGNNCC 1 cut(s) 199
NspI RCATGY 1 cut(s) 207
PfeI GAWTC 1 cut(s) 108
PflMI CCANNNNNTGG 1 cut(s) 49
PspN4I GGNNCC 1 cut(s) 199
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SaqAI TTAA 1 cut(s) 87
Sau3AI GATC 1 cut(s) 156
SetI ASST 4 cut(s) 75, 139, 199, 221
SfcI CTRYAG 2 cut(s) 33, 174
Sse9I AATT 2 cut(s) 78, 89
TasI AATT 2 cut(s) 78, 89
TfiI GAWTC 1 cut(s) 108
Tru1I TTAA 1 cut(s) 87
Tru9I TTAA 1 cut(s) 87
TscAI CASTG 1 cut(s) 251
TspRI CASTG 1 cut(s) 251
Van91I CCANNNNNTGG 1 cut(s) 49
XapI RAATTY 1 cut(s) 78
XceI RCATGY 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.