Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0019937

Physical Location & Seq

Genomic Coordinates Forward (+)

9796074 .. 9796669

Gene Structure 596 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0121200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGTTGCTCTTGTGTCAAGGTGCTCGACATTACATGGCTTGTGCTCGTGCTGCAATAAAATACGTCATTCTGGCTATCTCTGGTCATATGGATGATATCCCGGGAAAGTATAAGGAAGTTAAGCACATGATACTGTTTCTTTTAGAGATGCTAGAGCCATTCCTTGATCCCGCTGTAGGCAGATTCAAGGGTAAAATAGCCTTTGGAGACCTATCTTGTGCATATCCAGAAACCCAGGAACGGAATTGTGCTATTAATGTGATCCGTACAGCAGTGCAGAAACCAGCAGTTCTTCTTTCACTAGAATCTGAATGGAGGCGTGGATCAGTTGCTCCTAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002790 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0005788 GO:0005886 GO:0005911 GO:0006810 GO:0006950 GO:0006970 GO:0008104 GO:0008150 GO:0009266 GO:0009306 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009888 GO:0009934 GO:0009987 GO:0010035 GO:0010038 GO:0010073 GO:0010075 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022603 GO:0030054 GO:0031090 GO:0031974 GO:0032501 GO:0032502 GO:0032940 GO:0033036 GO:0033554 GO:0034976 GO:0040008 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046686 GO:0046903 GO:0048046 GO:0048507 GO:0048509 GO:0048638 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055044 GO:0065007 GO:0070013 GO:0071702 GO:0071705 GO:0071944 GO:0098588 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04141 ko04151 ko04626 ko04657 ko04915 ko04918 ko05200 ko05215 ko05418 map04141 map04151 map04626 map04657 map04915 map04918 map05200 map05215 map05418

Pfam Domains

Protein Families

HATPase_c HSP90

Protein Analysis

113

Amino Acids

12.66

Weight (kDa)

9.0

Isoelectric Point (pI)

40.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019937)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0040611
rosa_roxburghii	Rroxscaffold_1G00002480 Rroxscaffold_1G00043930 Rroxscaffold_2G00087960 Rroxscaffold_4G00295110
rosa_rugosa	Rorug03G0121200 Rorug03G0121300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	171
AclWI	GGATC	3 cut(s)	161, 256, 331
AfaI	GTAC	1 cut(s)	268
AfiI	CCNNNNNNNGG	2 cut(s)	176, 240
AgsI	TTSAA	1 cut(s)	187
AjnI	CCWGG	1 cut(s)	234
Alw21I	GWGCWC	2 cut(s)	25, 46
Alw26I	GTCTC	1 cut(s)	201
AlwI	GGATC	3 cut(s)	161, 256, 331
Ama87I	CYCGRG	1 cut(s)	100
ApeKI	GCWGC	1 cut(s)	50
AseI	ATTAAT	1 cut(s)	255
AspA2I	CCTAGG	1 cut(s)	335
AsuC2I	CCSGG	2 cut(s)	101, 102
AvaI	CYCGRG	1 cut(s)	100
AvrII	CCTAGG	1 cut(s)	335
BauI	CACGAG	1 cut(s)	45
Bbv12I	GWGCWC	2 cut(s)	25, 46
BbvI	GCAGC	1 cut(s)	37
BciT130I	CCWGG	1 cut(s)	236
BcnI	CCSGG	2 cut(s)	101, 102
BcoDI	GTCTC	1 cut(s)	201
BfaI	CTAG	3 cut(s)	152, 302, 336
BfmI	CTRYAG	1 cut(s)	174
BisI	GCNGC	1 cut(s)	51
BlnI	CCTAGG	1 cut(s)	335
BlsI	GCNGC	1 cut(s)	52
Bme1390I	CCNGG	3 cut(s)	101, 102, 236
BmeT110I	CYCGRG	1 cut(s)	100
BmrFI	CCNGG	3 cut(s)	101, 102, 236
BmsI	GCATC	1 cut(s)	138
BpuMI	CCSGG	2 cut(s)	101, 102
BsaI	GGTCTC	1 cut(s)	201
BsaJI	CCNNGG	3 cut(s)	100, 234, 335
Bsc4I	CCNNNNNNNGG	2 cut(s)	176, 240
BseBI	CCWGG	1 cut(s)	236
BseDI	CCNNGG	3 cut(s)	100, 234, 335
BseGI	GGATG	1 cut(s)	97
BseLI	CCNNNNNNNGG	2 cut(s)	176, 240
BseXI	GCAGC	1 cut(s)	37
BsgI	GTGCAG	1 cut(s)	296
BsiHKAI	GWGCWC	2 cut(s)	25, 46
BsiHKCI	CYCGRG	1 cut(s)	100
BsiSI	CCGG	1 cut(s)	101
BslI	CCNNNNNNNGG	2 cut(s)	176, 240
BsmAI	GTCTC	1 cut(s)	201
Bso31I	GGTCTC	1 cut(s)	201
BsoBI	CYCGRG	1 cut(s)	100
Bsp1286I	GDGCHC	2 cut(s)	25, 46
Bsp143I	GATC	3 cut(s)	166, 261, 323
BspACI	CCGC	1 cut(s)	171
BspPI	GGATC	3 cut(s)	161, 256, 331
BspTNI	GGTCTC	1 cut(s)	201
BssECI	CCNNGG	3 cut(s)	100, 234, 335
BssMI	GATC	3 cut(s)	166, 261, 323
BssSI	CACGAG	1 cut(s)	45
BssT1I	CCWWGG	1 cut(s)	335
Bst2BI	CACGAG	1 cut(s)	45
Bst2UI	CCWGG	1 cut(s)	236
Bst4CI	ACNGT	1 cut(s)	135
BstF5I	GGATG	1 cut(s)	97
BstKTI	GATC	3 cut(s)	169, 264, 326
BstMAI	GTCTC	1 cut(s)	201
BstMBI	GATC	3 cut(s)	166, 261, 323
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstNI	CCWGG	1 cut(s)	236
BstSCI	CCNGG	3 cut(s)	99, 100, 234
BstSFI	CTRYAG	1 cut(s)	174
BstV1I	GCAGC	1 cut(s)	37
BtsCI	GGATG	1 cut(s)	97
BtsI	GCAGTG	1 cut(s)	279
BtsIMutI	CAGTG	1 cut(s)	279
Cfr9I	CCCGGG	1 cut(s)	100
Csp6I	GTAC	1 cut(s)	267
CviAII	CATG	2 cut(s)	34, 127
CviJI	RGCY	4 cut(s)	38, 74, 157, 200
CviKI_1	RGCY	4 cut(s)	38, 74, 157, 200
CviQI	GTAC	1 cut(s)	267
DpnI	GATC	3 cut(s)	168, 263, 325
DpnII	GATC	3 cut(s)	166, 261, 323
Eco130I	CCWWGG	1 cut(s)	335
Eco31I	GGTCTC	1 cut(s)	201
Eco32I	GATATC	1 cut(s)	97
Eco88I	CYCGRG	1 cut(s)	100
EcoRII	CCWGG	1 cut(s)	234
EcoRV	GATATC	1 cut(s)	97
EcoT14I	CCWWGG	1 cut(s)	335
ErhI	CCWWGG	1 cut(s)	335
FaeI	CATG	2 cut(s)	37, 130
FaiI	YATR	6 cut(s)	35, 87, 89, 111, 128, 223
FatI	CATG	2 cut(s)	33, 126
FauI	CCCGC	1 cut(s)	178
FauNDI	CATATG	1 cut(s)	87
Fnu4HI	GCNGC	1 cut(s)	51
FokI	GGATG	1 cut(s)	104
Fsp4HI	GCNGC	1 cut(s)	51
FspBI	CTAG	3 cut(s)	152, 302, 336
GluI	GCNGC	1 cut(s)	51
HapII	CCGG	1 cut(s)	101
Hin1II	CATG	2 cut(s)	37, 130
HinfI	GANTC	2 cut(s)	183, 305
HpaII	CCGG	1 cut(s)	101
Hpy188I	TCNGA	1 cut(s)	310
Hpy188III	TCNNGA	1 cut(s)	227
HpyCH4III	ACNGT	1 cut(s)	135
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	3 cut(s)	53, 221, 277
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
HpySE526I	ACGT	1 cut(s)	63
Hsp92II	CATG	2 cut(s)	37, 130
Kzo9I	GATC	3 cut(s)	166, 261, 323
LmnI	GCTCC	1 cut(s)	337
LpnPI	CCDG	7 cut(s)	56, 66, 114, 221, 240, 248, 297
Lsp1109I	GCAGC	1 cut(s)	37
LweI	GCATC	1 cut(s)	138
MaeI	CTAG	3 cut(s)	152, 302, 336
MaeII	ACGT	1 cut(s)	63
MalI	GATC	3 cut(s)	168, 263, 325
MboI	GATC	3 cut(s)	166, 261, 323
MboII	GAAGA	1 cut(s)	284
MhlI	GDGCHC	2 cut(s)	25, 46
MluCI	AATT	1 cut(s)	244
MnlI	CCTC	1 cut(s)	309
MseI	TTAA	2 cut(s)	120, 255
MslI	CAYNNNNRTG	1 cut(s)	90
MspA1I	CMGCKG	1 cut(s)	173
MspI	CCGG	1 cut(s)	101
MspR9I	CCNGG	3 cut(s)	101, 102, 236
MvaI	CCWGG	1 cut(s)	236
MwoI	GCNNNNNNNGC	1 cut(s)	50
NciI	CCSGG	2 cut(s)	101, 102
NdeI	CATATG	1 cut(s)	87
NdeII	GATC	3 cut(s)	166, 261, 323
NlaIII	CATG	2 cut(s)	37, 130
PfeI	GAWTC	2 cut(s)	183, 305
PkrI	GCNGC	1 cut(s)	52
PshBI	ATTAAT	1 cut(s)	255
Psp6I	CCWGG	1 cut(s)	234
PspGI	CCWGG	1 cut(s)	234
RsaI	GTAC	1 cut(s)	268
RsaNI	GTAC	1 cut(s)	267
RseI	CAYNNNNRTG	1 cut(s)	90
SaqAI	TTAA	2 cut(s)	120, 255
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	3 cut(s)	166, 261, 323
ScrFI	CCNGG	3 cut(s)	101, 102, 236
SduI	GDGCHC	2 cut(s)	25, 46
SetI	ASST	4 cut(s)	22, 66, 213, 341
SfaNI	GCATC	1 cut(s)	138
SfcI	CTRYAG	1 cut(s)	174
SmaI	CCCGGG	1 cut(s)	102
SmiMI	CAYNNNNRTG	1 cut(s)	90
Sse9I	AATT	1 cut(s)	244
SsiI	CCGC	1 cut(s)	171
SspMI	CTAG	3 cut(s)	152, 302, 336
StyD4I	CCNGG	3 cut(s)	99, 100, 234
StyI	CCWWGG	1 cut(s)	335
TaaI	ACNGT	1 cut(s)	135
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	1 cut(s)	25
TasI	AATT	1 cut(s)	244
TfiI	GAWTC	2 cut(s)	183, 305
Tru1I	TTAA	2 cut(s)	120, 255
Tru9I	TTAA	2 cut(s)	120, 255
TscAI	CASTG	1 cut(s)	279
TseI	GCWGC	1 cut(s)	50
TspGWI	ACGGA	2 cut(s)	254, 256
TspMI	CCCGGG	1 cut(s)	100
TspRI	CASTG	1 cut(s)	279
VspI	ATTAAT	1 cut(s)	255
XmaI	CCCGGG	1 cut(s)	100
XmaJI	CCTAGG	1 cut(s)	335
XspI	CTAG	3 cut(s)	152, 302, 336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.