Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0019937

Physical Location & Seq

Genomic Coordinates Forward (+)

2939687 .. 2942035

Gene Structure 2349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00002480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 153 bp

ATGTCCATATGTGATTGGGGTATAGGTACGACAAAGGAGGACTTGATCAAGAACTTGGAAACTATAGCAAAATCTGGAACTTCAGGTGCCATAGGCCTCTACAAAACCTCGAAAAAAAAAAAACTTTCAGTGTGGCAAATGCGTCTCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002790 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0005788 GO:0005886 GO:0005911 GO:0006810 GO:0006950 GO:0006970 GO:0008104 GO:0008150 GO:0009266 GO:0009306 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009888 GO:0009934 GO:0009987 GO:0010035 GO:0010038 GO:0010073 GO:0010075 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022603 GO:0030054 GO:0031090 GO:0031974 GO:0032501 GO:0032502 GO:0032940 GO:0033036 GO:0033554 GO:0034976 GO:0040008 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046686 GO:0046903 GO:0048046 GO:0048507 GO:0048509 GO:0048638 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055044 GO:0065007 GO:0070013 GO:0071702 GO:0071705 GO:0071944 GO:0098588 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04141 ko04151 ko04626 ko04657 ko04915 ko04918 ko05200 ko05215 ko05418 map04141 map04151 map04626 map04657 map04915 map04918 map05200 map05215 map05418

Pfam Domains

Protein Families

HATPase_c HSP90

Protein Analysis

50

Amino Acids

5.56

Weight (kDa)

9.73

Isoelectric Point (pI)

19.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019937)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0040611
rosa_roxburghii	Rroxscaffold_1G00002480 Rroxscaffold_1G00043930 Rroxscaffold_2G00087960 Rroxscaffold_4G00295110
rosa_rugosa	Rorug03G0121200 Rorug03G0121300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	86
AcuI	CTGAAG	1 cut(s)	66
AfaI	GTAC	1 cut(s)	28
Alw26I	GTCTC	1 cut(s)	149
AoxI	GGCC	1 cut(s)	94
BanI	GGYRCC	1 cut(s)	86
BclI	TGATCA	1 cut(s)	45
BcoDI	GTCTC	1 cut(s)	149
BfmI	CTRYAG	1 cut(s)	63
BmiI	GGNNCC	1 cut(s)	88
BpmI	CTGGAG	1 cut(s)	131
Bse1I	ACTGG	1 cut(s)	148
BseNI	ACTGG	1 cut(s)	148
BshFI	GGCC	1 cut(s)	96
BshNI	GGYRCC	1 cut(s)	86
BsmAI	GTCTC	1 cut(s)	149
BsmBI	CGTCTC	1 cut(s)	149
BsnI	GGCC	1 cut(s)	96
Bsp143I	GATC	1 cut(s)	45
BspANI	GGCC	1 cut(s)	96
BspLI	GGNNCC	1 cut(s)	88
BspT107I	GGYRCC	1 cut(s)	86
BsrI	ACTGG	1 cut(s)	148
BssMI	GATC	1 cut(s)	45
BstKTI	GATC	1 cut(s)	48
BstMAI	GTCTC	1 cut(s)	149
BstMBI	GATC	1 cut(s)	45
BstSFI	CTRYAG	1 cut(s)	63
BsuRI	GGCC	1 cut(s)	96
BtsIMutI	CAGTG	1 cut(s)	135
CseI	GACGC	1 cut(s)	131
Csp6I	GTAC	1 cut(s)	27
CviJI	RGCY	1 cut(s)	96
CviKI_1	RGCY	1 cut(s)	96
CviQI	GTAC	1 cut(s)	27
DpnI	GATC	1 cut(s)	47
DpnII	GATC	1 cut(s)	45
Eco147I	AGGCCT	1 cut(s)	96
Eco57I	CTGAAG	1 cut(s)	66
Esp3I	CGTCTC	1 cut(s)	149
FaiI	YATR	5 cut(s)	8, 10, 23, 65, 92
FalI	AAGNNNNNCTT	2 cut(s)	26, 58
FauNDI	CATATG	1 cut(s)	8
FbaI	TGATCA	1 cut(s)	45
GsuI	CTGGAG	1 cut(s)	131
HaeIII	GGCC	1 cut(s)	96
HgaI	GACGC	1 cut(s)	131
Hpy188III	TCNNGA	2 cut(s)	49, 75
Ksp22I	TGATCA	1 cut(s)	45
Kzo9I	GATC	1 cut(s)	45
LpnPI	CCDG	2 cut(s)	60, 69
MalI	GATC	1 cut(s)	47
MboI	GATC	1 cut(s)	45
MnlI	CCTC	3 cut(s)	31, 107, 118
NdeI	CATATG	1 cut(s)	8
NdeII	GATC	1 cut(s)	45
NlaIV	GGNNCC	1 cut(s)	88
PceI	AGGCCT	1 cut(s)	96
PspN4I	GGNNCC	1 cut(s)	88
RsaI	GTAC	1 cut(s)	28
RsaNI	GTAC	1 cut(s)	27
Sau3AI	GATC	1 cut(s)	45
SetI	ASST	3 cut(s)	28, 88, 110
SfcI	CTRYAG	1 cut(s)	63
SgeI	CNNG	6 cut(s)	55, 61, 67, 87, 96, 121
SseBI	AGGCCT	1 cut(s)	96
StuI	AGGCCT	1 cut(s)	96
TaqI	TCGA	1 cut(s)	110
TscAI	CASTG	1 cut(s)	135
TspRI	CASTG	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.