Rroxscaffold_2G00087960

Endoplasmin homolog

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
10040886 .. 10043534
2649 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_2G00087960.1

Sequence Viewer

Length: 153 bp
ATGTCCATACGTGATTGGGGTATAGGTATGACAAAGGAGGACTTGATCAAGAGCTTGGAAACTATAGCAAAATCTAGAACTTCAGGTGCCACAGGCCTCTACAAAACCTCGAAAAAAAAAAAACTTTCAGTGTGGCAAATGCGTCTCCAGTGA

Protein Analysis

50

Amino Acids

5.7

Weight (kDa)

10.29

Isoelectric Point (pI)

20.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 86
AcuI CTGAAG 1 cut(s) 66
AluBI AGCT 1 cut(s) 54
AluI AGCT 1 cut(s) 54
Alw26I GTCTC 1 cut(s) 149
AoxI GGCC 1 cut(s) 94
BanI GGYRCC 1 cut(s) 86
BclI TGATCA 1 cut(s) 45
BcoDI GTCTC 1 cut(s) 149
BfaI CTAG 1 cut(s) 75
BfmI CTRYAG 1 cut(s) 63
BmiI GGNNCC 1 cut(s) 88
BpmI CTGGAG 1 cut(s) 131
BsaAI YACGTR 1 cut(s) 11
Bse1I ACTGG 1 cut(s) 148
BseNI ACTGG 1 cut(s) 148
BshFI GGCC 1 cut(s) 96
BshNI GGYRCC 1 cut(s) 86
BsmAI GTCTC 1 cut(s) 149
BsmBI CGTCTC 1 cut(s) 149
BsnI GGCC 1 cut(s) 96
Bsp143I GATC 1 cut(s) 45
BspANI GGCC 1 cut(s) 96
BspLI GGNNCC 1 cut(s) 88
BspT107I GGYRCC 1 cut(s) 86
BsrI ACTGG 1 cut(s) 148
BssMI GATC 1 cut(s) 45
BstBAI YACGTR 1 cut(s) 11
BstKTI GATC 1 cut(s) 48
BstMAI GTCTC 1 cut(s) 149
BstMBI GATC 1 cut(s) 45
BstSFI CTRYAG 1 cut(s) 63
BsuRI GGCC 1 cut(s) 96
BtsIMutI CAGTG 1 cut(s) 135
CseI GACGC 1 cut(s) 131
CviJI RGCY 2 cut(s) 54, 96
CviKI_1 RGCY 2 cut(s) 54, 96
DpnI GATC 1 cut(s) 47
DpnII GATC 1 cut(s) 45
Eco147I AGGCCT 1 cut(s) 96
Eco57I CTGAAG 1 cut(s) 66
Esp3I CGTCTC 1 cut(s) 149
FaiI YATR 4 cut(s) 8, 23, 29, 65
FalI AAGNNNNNCTT 2 cut(s) 26, 58
FbaI TGATCA 1 cut(s) 45
FspBI CTAG 1 cut(s) 75
GsuI CTGGAG 1 cut(s) 131
HaeIII GGCC 1 cut(s) 96
HgaI GACGC 1 cut(s) 131
Hpy188III TCNNGA 2 cut(s) 49, 75
HpyCH4IV ACGT 1 cut(s) 10
HpySE526I ACGT 1 cut(s) 10
Ksp22I TGATCA 1 cut(s) 45
Kzo9I GATC 1 cut(s) 45
LpnPI CCDG 2 cut(s) 69, 78
MaeI CTAG 1 cut(s) 75
MaeII ACGT 1 cut(s) 10
MalI GATC 1 cut(s) 47
MboI GATC 1 cut(s) 45
MnlI CCTC 3 cut(s) 31, 107, 118
NdeII GATC 1 cut(s) 45
NlaIV GGNNCC 1 cut(s) 88
PceI AGGCCT 1 cut(s) 96
Ppu21I YACGTR 1 cut(s) 11
PspN4I GGNNCC 1 cut(s) 88
Sau3AI GATC 1 cut(s) 45
SetI ASST 5 cut(s) 13, 28, 56, 88, 110
SfcI CTRYAG 1 cut(s) 63
SgeI CNNG 8 cut(s) 23, 55, 61, 67, 87, 96, 105, 121
SseBI AGGCCT 1 cut(s) 96
SspMI CTAG 1 cut(s) 75
StuI AGGCCT 1 cut(s) 96
TaiI ACGT 1 cut(s) 13
TaqI TCGA 1 cut(s) 110
TscAI CASTG 1 cut(s) 135
TspRI CASTG 1 cut(s) 135
XbaI TCTAGA 1 cut(s) 74
XspI CTAG 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.