RchiOBHm_Chr5g0044931

Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
40418934 .. 40419958
1025 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 546 bp
ATGCTAAATCATAGCCTAGTTTGGAAGCCACTCTCGACTTGGCCAAGTGATGCAGTCGAACCAGTCCTCAAAATGACGTCGTTTCGGCTCTTGTCAGGGGCATCGCGTAGGCTTCTGAAGCCTCCTTCACTCTCTCGCTCCCATCTCTCTGCTGCAGTCTCTACCTATCCCCCAACCACCAAACCCAGCCCTAAAGAAACGCCTTTCATTCCATTTCATCTCAGGCACCGTTGGATTCCCAGTTATCATCTTGATTCTGATCCCAGGATCGCAGCCCACATATGCACTTCATCGAACAAGGACGACAATCGGGTCAGCGATGACCCGAAAGCCCAAGCTTCTTGGATCGACGCTTATTTGCCTACGCAGGCCCGCCCTTATGCTAAGCTGGCTCGCCTCGACAAGCCCATTGGCACCTGGTTGCTTGCTTGGCCTTGTATGTGGTCAATAACATTGGCAGCAAGTCCAGGACACCTTAATATCGATGTTGACACTACTTGGATGTTGGGCTTTTTTTTTAAGAGGCGCCGCATGTACCATAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

181

Amino Acids

20.7

Weight (kDa)

10.01

Isoelectric Point (pI)

58.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020560)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0044931
rosa_laevigata RLG00000034312
rosa_multiflora Rmu_sc0008894.1_g000005
rosa_rugosa Rorug05G0219600
rosa_samantha Rh5BG308500 Rh5DG319000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 311
AatII GACGTC 1 cut(s) 80
AccB1I GGYRCC 3 cut(s) 225, 413, 525
AccII CGCG 1 cut(s) 106
AciI CCGC 2 cut(s) 373, 529
AclWI GGATC 3 cut(s) 254, 275, 353
AcoI YGGCCR 1 cut(s) 41
AcuI CTGAAG 1 cut(s) 137
AcyI GRCGYC 2 cut(s) 77, 526
AfaI GTAC 1 cut(s) 536
AjnI CCWGG 3 cut(s) 263, 416, 466
AluBI AGCT 2 cut(s) 338, 388
AluI AGCT 2 cut(s) 338, 388
Alw26I GTCTC 1 cut(s) 163
AlwI GGATC 3 cut(s) 254, 275, 353
AoxI GGCC 3 cut(s) 41, 369, 431
ApeKI GCWGC 3 cut(s) 152, 272, 458
AspLEI GCGC 1 cut(s) 528
AspS9I GGNCC 1 cut(s) 370
BalI TGGCCA 1 cut(s) 43
BanI GGYRCC 3 cut(s) 225, 413, 525
BbvI GCAGC 3 cut(s) 139, 284, 470
BccI CCATC 1 cut(s) 150
BciT130I CCWGG 3 cut(s) 265, 418, 468
BcoDI GTCTC 1 cut(s) 163
BfaI CTAG 1 cut(s) 17
BfmI CTRYAG 1 cut(s) 153
BfoI RGCGCY 1 cut(s) 529
BisI GCNGC 4 cut(s) 153, 273, 459, 529
BlpI GCTNAGC 1 cut(s) 384
BlsI GCNGC 4 cut(s) 154, 274, 460, 530
Bme1390I CCNGG 3 cut(s) 265, 418, 468
BmgT120I GGNCC 1 cut(s) 370
BmiI GGNNCC 3 cut(s) 227, 415, 527
BmrFI CCNGG 3 cut(s) 265, 418, 468
BmrI ACTGGG 1 cut(s) 234
BmsI GCATC 2 cut(s) 40, 110
BmuI ACTGGG 1 cut(s) 234
Bpu1102I GCTNAGC 1 cut(s) 384
Bsa29I ATCGAT 1 cut(s) 483
BsaBI GATNNNNATC 1 cut(s) 258
BsaHI GRCGYC 2 cut(s) 77, 526
BsaJI CCNNGG 1 cut(s) 263
Bse1I ACTGG 2 cut(s) 62, 240
Bse8I GATNNNNATC 1 cut(s) 258
BseBI CCWGG 3 cut(s) 265, 418, 468
BseCI ATCGAT 1 cut(s) 483
BseDI CCNNGG 1 cut(s) 263
BseGI GGATG 1 cut(s) 507
BseJI GATNNNNATC 1 cut(s) 258
BseMII CTCAG 1 cut(s) 235
BseNI ACTGG 2 cut(s) 62, 240
BseXI GCAGC 3 cut(s) 139, 284, 470
BseYI CCCAGC 1 cut(s) 185
Bsh1236I CGCG 1 cut(s) 106
BshFI GGCC 3 cut(s) 43, 371, 433
BshNI GGYRCC 3 cut(s) 225, 413, 525
BshVI ATCGAT 1 cut(s) 483
BsmAI GTCTC 1 cut(s) 163
BsnI GGCC 3 cut(s) 43, 371, 433
Bsp143I GATC 3 cut(s) 259, 267, 345
Bsp1720I GCTNAGC 1 cut(s) 384
BspACI CCGC 2 cut(s) 373, 529
BspANI GGCC 3 cut(s) 43, 371, 433
BspCNI CTCAG 1 cut(s) 234
BspDI ATCGAT 1 cut(s) 483
BspFNI CGCG 1 cut(s) 106
BspLI GGNNCC 3 cut(s) 227, 415, 527
BspMAI CTGCAG 1 cut(s) 157
BspPI GGATC 3 cut(s) 254, 275, 353
BspT107I GGYRCC 3 cut(s) 225, 413, 525
BsrI ACTGG 2 cut(s) 62, 240
BssECI CCNNGG 1 cut(s) 263
BssMI GATC 3 cut(s) 259, 267, 345
BssNI GRCGYC 2 cut(s) 77, 526
Bst2UI CCWGG 3 cut(s) 265, 418, 468
Bst4CI ACNGT 1 cut(s) 230
BstACI GRCGYC 2 cut(s) 77, 526
BstC8I GCNNGC 5 cut(s) 369, 373, 390, 394, 426
BstDEI CTNAG 2 cut(s) 221, 384
BstF5I GGATG 1 cut(s) 507
BstFNI CGCG 1 cut(s) 106
BstH2I RGCGCY 1 cut(s) 529
BstHHI GCGC 1 cut(s) 528
BstKTI GATC 3 cut(s) 262, 270, 348
BstMAI GTCTC 1 cut(s) 163
BstMBI GATC 3 cut(s) 259, 267, 345
BstMWI GCNNNNNNNGC 3 cut(s) 118, 389, 430
BstNI CCWGG 3 cut(s) 265, 418, 468
BstNSI RCATGY 1 cut(s) 535
BstSCI CCNGG 3 cut(s) 263, 416, 466
BstSFI CTRYAG 1 cut(s) 153
BstUI CGCG 1 cut(s) 106
BstV1I GCAGC 3 cut(s) 139, 284, 470
Bsu15I ATCGAT 1 cut(s) 483
BsuRI GGCC 3 cut(s) 43, 371, 433
BsuTUI ATCGAT 1 cut(s) 483
BtgZI GCGATG 2 cut(s) 87, 333
BtsCI GGATG 1 cut(s) 507
Cac8I GCNNGC 5 cut(s) 369, 373, 390, 394, 426
CfoI GCGC 1 cut(s) 528
Cfr13I GGNCC 1 cut(s) 370
ClaI ATCGAT 1 cut(s) 483
CseI GACGC 1 cut(s) 359
CsiI ACCWGGT 1 cut(s) 416
Csp6I GTAC 1 cut(s) 535
CviAII CATG 1 cut(s) 532
CviQI GTAC 1 cut(s) 535
DdeI CTNAG 2 cut(s) 221, 384
DinI GGCGCC 1 cut(s) 527
DpnI GATC 3 cut(s) 261, 269, 347
DpnII GATC 3 cut(s) 259, 267, 345
DrdI GACNNNNNNGTC 1 cut(s) 311
DseDI GACNNNNNNGTC 1 cut(s) 311
EaeI YGGCCR 1 cut(s) 41
Eco57I CTGAAG 1 cut(s) 137
EcoRII CCWGG 3 cut(s) 263, 416, 466
EgeI GGCGCC 1 cut(s) 527
EheI GGCGCC 1 cut(s) 527
FaeI CATG 1 cut(s) 535
FaiI YATR 7 cut(s) 12, 281, 283, 381, 440, 533, 540
FatI CATG 1 cut(s) 531
FauI CCCGC 1 cut(s) 380
FauNDI CATATG 1 cut(s) 281
Fnu4HI GCNGC 4 cut(s) 153, 273, 459, 529
FokI GGATG 1 cut(s) 514
Fsp4HI GCNGC 4 cut(s) 153, 273, 459, 529
FspBI CTAG 1 cut(s) 17
GlaI GCGC 1 cut(s) 527
GluI GCNGC 4 cut(s) 153, 273, 459, 529
GsaI CCCAGC 1 cut(s) 189
HaeII RGCGCY 1 cut(s) 529
HaeIII GGCC 3 cut(s) 43, 371, 433
HgaI GACGC 1 cut(s) 359
HhaI GCGC 1 cut(s) 528
Hin1I GRCGYC 2 cut(s) 77, 526
Hin1II CATG 1 cut(s) 535
Hin6I GCGC 1 cut(s) 526
HinP1I GCGC 1 cut(s) 526
HincII GTYRAC 1 cut(s) 490
HindII GTYRAC 1 cut(s) 490
HindIII AAGCTT 1 cut(s) 336
HinfI GANTC 2 cut(s) 235, 254
Hpy166II GTNNAC 1 cut(s) 490
Hpy188I TCNGA 2 cut(s) 117, 259
Hpy188III TCNNGA 2 cut(s) 34, 251
Hpy8I GTNNAC 1 cut(s) 490
Hpy99I CGWCG 2 cut(s) 82, 353
HpyAV CCTTC 1 cut(s) 135
HpyCH4III ACNGT 1 cut(s) 230
HpyCH4IV ACGT 1 cut(s) 77
HpyCH4V TGCA 3 cut(s) 53, 155, 285
HpyF10VI GCNNNNNNNGC 3 cut(s) 118, 389, 430
HpyF3I CTNAG 2 cut(s) 221, 384
HpySE526I ACGT 1 cut(s) 77
Hsp92I GRCGYC 2 cut(s) 77, 526
Hsp92II CATG 1 cut(s) 535
HspAI GCGC 1 cut(s) 526
KasI GGCGCC 1 cut(s) 525
Kzo9I GATC 3 cut(s) 259, 267, 345
LmnI GCTCC 1 cut(s) 143
Lsp1109I GCAGC 3 cut(s) 139, 284, 470
LweI GCATC 2 cut(s) 40, 110
MabI ACCWGGT 1 cut(s) 416
MaeI CTAG 1 cut(s) 17
MaeII ACGT 1 cut(s) 77
MalI GATC 3 cut(s) 261, 269, 347
MboI GATC 3 cut(s) 259, 267, 345
MlsI TGGCCA 1 cut(s) 43
MluNI TGGCCA 1 cut(s) 43
Mly113I GGCGCC 1 cut(s) 526
MmeI TCCRAC 1 cut(s) 212
MnlI CCTC 4 cut(s) 77, 132, 407, 516
Mox20I TGGCCA 1 cut(s) 43
MscI TGGCCA 1 cut(s) 43
MseI TTAA 2 cut(s) 477, 519
Msp20I TGGCCA 1 cut(s) 43
MspR9I CCNGG 3 cut(s) 265, 418, 468
MvaI CCWGG 3 cut(s) 265, 418, 468
MvnI CGCG 1 cut(s) 106
MwoI GCNNNNNNNGC 3 cut(s) 118, 389, 430
NarI GGCGCC 1 cut(s) 526
NdeI CATATG 1 cut(s) 281
NdeII GATC 3 cut(s) 259, 267, 345
NlaIII CATG 1 cut(s) 535
NlaIV GGNNCC 3 cut(s) 227, 415, 527
NspI RCATGY 1 cut(s) 535
PfeI GAWTC 2 cut(s) 235, 254
PfoI TCCNGGA 1 cut(s) 466
PkrI GCNGC 4 cut(s) 154, 274, 460, 530
PluTI GGCGCC 1 cut(s) 529
Psp6I CCWGG 3 cut(s) 263, 416, 466
PspFI CCCAGC 1 cut(s) 185
PspGI CCWGG 3 cut(s) 263, 416, 466
PspN4I GGNNCC 3 cut(s) 227, 415, 527
PspPI GGNCC 1 cut(s) 370
PstI CTGCAG 1 cut(s) 157
RsaI GTAC 1 cut(s) 536
RsaNI GTAC 1 cut(s) 535
SaqAI TTAA 2 cut(s) 477, 519
SatI GCNGC 4 cut(s) 153, 273, 459, 529
Sau3AI GATC 3 cut(s) 259, 267, 345
Sau96I GGNCC 1 cut(s) 370
ScrFI CCNGG 3 cut(s) 265, 418, 468
SetI ASST 6 cut(s) 80, 167, 340, 390, 419, 477
SexAI ACCWGGT 1 cut(s) 416
SfaNI GCATC 2 cut(s) 40, 110
SfcI CTRYAG 1 cut(s) 153
SfoI GGCGCC 1 cut(s) 527
SsiI CCGC 2 cut(s) 373, 529
SspDI GGCGCC 1 cut(s) 525
SspMI CTAG 1 cut(s) 17
StyD4I CCNGG 3 cut(s) 263, 416, 466
TaaI ACNGT 1 cut(s) 230
TaiI ACGT 1 cut(s) 80
TaqI TCGA 6 cut(s) 35, 57, 293, 348, 399, 483
TauI GCSGC 1 cut(s) 531
TfiI GAWTC 2 cut(s) 235, 254
Tru1I TTAA 2 cut(s) 477, 519
Tru9I TTAA 2 cut(s) 477, 519
TseI GCWGC 3 cut(s) 152, 272, 458
TspDTI ATGAA 3 cut(s) 196, 206, 279
XceI RCATGY 1 cut(s) 535
XcmI CCANNNNNNNNNTGG 1 cut(s) 36
XspI CTAG 1 cut(s) 17
ZraI GACGTC 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.