Rh5BG308500

Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Reverse (-)
40297104 .. 40297550
447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG308500.1

Sequence Viewer

Length: 447 bp
ATGCTAAATCATAGCCTAGTTTGGAAGCCACTCTCGACTTGGCCAAGTGATGCAGTCGAACCAGTCCTCAAAATGACGTCGTTTCGGCTCTTGTCAGGGGCATCGCGTAGGCTTCTGAAGCCTCCTTCACTCTCTCGCTCCCATCTCTCTGCTGCAGTCTCTACCTATCCCCCAACCACCAAACCCAGCCCTAAAGAAACGCCTTTCATTCCATTTCATCTCAGGCACCGTTGGATTCCCAGTTATCATCTTGATTCTGATCCCAGGATCGCAGCCCACATATGCACTTCATCGAACAAGGACGACAATCGGGTCAGCGATGACCCGAAAGCCCAAGCTTCTTGGATCGACGCTTATTTGCCTACGCAGGCCCGCCCTTATGCTAAGCTGGCTCGCCTCGACAAGCCCATTGGCACCTGGTTGCTTGCTTGGCCTTGTATGTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

148

Amino Acids

16.81

Weight (kDa)

9.82

Isoelectric Point (pI)

52.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020560)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0044931
rosa_laevigata RLG00000034312
rosa_multiflora Rmu_sc0008894.1_g000005
rosa_rugosa Rorug05G0219600
rosa_samantha Rh5BG308500 Rh5DG319000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 311
AatII GACGTC 1 cut(s) 80
AccB1I GGYRCC 2 cut(s) 225, 413
AccII CGCG 1 cut(s) 106
AciI CCGC 1 cut(s) 373
AclWI GGATC 3 cut(s) 254, 275, 353
AcoI YGGCCR 1 cut(s) 41
AcuI CTGAAG 1 cut(s) 137
AcyI GRCGYC 1 cut(s) 77
AjnI CCWGG 2 cut(s) 263, 416
AluBI AGCT 2 cut(s) 338, 388
AluI AGCT 2 cut(s) 338, 388
Alw26I GTCTC 1 cut(s) 163
AlwI GGATC 3 cut(s) 254, 275, 353
AoxI GGCC 3 cut(s) 41, 369, 431
ApeKI GCWGC 2 cut(s) 152, 272
AspS9I GGNCC 1 cut(s) 370
BalI TGGCCA 1 cut(s) 43
BanI GGYRCC 2 cut(s) 225, 413
BbvI GCAGC 2 cut(s) 139, 284
BccI CCATC 1 cut(s) 150
BciT130I CCWGG 2 cut(s) 265, 418
BcoDI GTCTC 1 cut(s) 163
BfaI CTAG 1 cut(s) 17
BfmI CTRYAG 1 cut(s) 153
BisI GCNGC 2 cut(s) 153, 273
BlpI GCTNAGC 1 cut(s) 384
BlsI GCNGC 2 cut(s) 154, 274
Bme1390I CCNGG 2 cut(s) 265, 418
BmgT120I GGNCC 1 cut(s) 370
BmiI GGNNCC 2 cut(s) 227, 415
BmrFI CCNGG 2 cut(s) 265, 418
BmrI ACTGGG 1 cut(s) 234
BmsI GCATC 2 cut(s) 40, 110
BmuI ACTGGG 1 cut(s) 234
Bpu1102I GCTNAGC 1 cut(s) 384
BsaBI GATNNNNATC 1 cut(s) 258
BsaHI GRCGYC 1 cut(s) 77
BsaJI CCNNGG 1 cut(s) 263
Bse1I ACTGG 2 cut(s) 62, 240
Bse8I GATNNNNATC 1 cut(s) 258
BseBI CCWGG 2 cut(s) 265, 418
BseDI CCNNGG 1 cut(s) 263
BseJI GATNNNNATC 1 cut(s) 258
BseMII CTCAG 1 cut(s) 235
BseNI ACTGG 2 cut(s) 62, 240
BseXI GCAGC 2 cut(s) 139, 284
BseYI CCCAGC 1 cut(s) 185
Bsh1236I CGCG 1 cut(s) 106
BshFI GGCC 3 cut(s) 43, 371, 433
BshNI GGYRCC 2 cut(s) 225, 413
BsmAI GTCTC 1 cut(s) 163
BsnI GGCC 3 cut(s) 43, 371, 433
Bsp143I GATC 3 cut(s) 259, 267, 345
Bsp1720I GCTNAGC 1 cut(s) 384
BspACI CCGC 1 cut(s) 373
BspANI GGCC 3 cut(s) 43, 371, 433
BspCNI CTCAG 1 cut(s) 234
BspFNI CGCG 1 cut(s) 106
BspLI GGNNCC 2 cut(s) 227, 415
BspMAI CTGCAG 1 cut(s) 157
BspPI GGATC 3 cut(s) 254, 275, 353
BspT107I GGYRCC 2 cut(s) 225, 413
BsrI ACTGG 2 cut(s) 62, 240
BssECI CCNNGG 1 cut(s) 263
BssMI GATC 3 cut(s) 259, 267, 345
BssNI GRCGYC 1 cut(s) 77
Bst2UI CCWGG 2 cut(s) 265, 418
Bst4CI ACNGT 1 cut(s) 230
BstACI GRCGYC 1 cut(s) 77
BstC8I GCNNGC 5 cut(s) 369, 373, 390, 394, 426
BstDEI CTNAG 2 cut(s) 221, 384
BstFNI CGCG 1 cut(s) 106
BstKTI GATC 3 cut(s) 262, 270, 348
BstMAI GTCTC 1 cut(s) 163
BstMBI GATC 3 cut(s) 259, 267, 345
BstMWI GCNNNNNNNGC 3 cut(s) 118, 389, 430
BstNI CCWGG 2 cut(s) 265, 418
BstSCI CCNGG 2 cut(s) 263, 416
BstSFI CTRYAG 1 cut(s) 153
BstUI CGCG 1 cut(s) 106
BstV1I GCAGC 2 cut(s) 139, 284
BsuRI GGCC 3 cut(s) 43, 371, 433
BtgZI GCGATG 2 cut(s) 87, 333
Cac8I GCNNGC 5 cut(s) 369, 373, 390, 394, 426
Cfr13I GGNCC 1 cut(s) 370
CseI GACGC 1 cut(s) 359
CsiI ACCWGGT 1 cut(s) 416
DdeI CTNAG 2 cut(s) 221, 384
DpnI GATC 3 cut(s) 261, 269, 347
DpnII GATC 3 cut(s) 259, 267, 345
DrdI GACNNNNNNGTC 1 cut(s) 311
DseDI GACNNNNNNGTC 1 cut(s) 311
EaeI YGGCCR 1 cut(s) 41
Eco57I CTGAAG 1 cut(s) 137
EcoRII CCWGG 2 cut(s) 263, 416
FaiI YATR 5 cut(s) 12, 281, 283, 381, 440
FauI CCCGC 1 cut(s) 380
FauNDI CATATG 1 cut(s) 281
Fnu4HI GCNGC 2 cut(s) 153, 273
Fsp4HI GCNGC 2 cut(s) 153, 273
FspBI CTAG 1 cut(s) 17
GluI GCNGC 2 cut(s) 153, 273
GsaI CCCAGC 1 cut(s) 189
HaeIII GGCC 3 cut(s) 43, 371, 433
HgaI GACGC 1 cut(s) 359
Hin1I GRCGYC 1 cut(s) 77
HindIII AAGCTT 1 cut(s) 336
HinfI GANTC 2 cut(s) 235, 254
Hpy188I TCNGA 2 cut(s) 117, 259
Hpy188III TCNNGA 2 cut(s) 34, 251
Hpy99I CGWCG 2 cut(s) 82, 353
HpyAV CCTTC 1 cut(s) 135
HpyCH4III ACNGT 1 cut(s) 230
HpyCH4IV ACGT 1 cut(s) 77
HpyCH4V TGCA 3 cut(s) 53, 155, 285
HpyF10VI GCNNNNNNNGC 3 cut(s) 118, 389, 430
HpyF3I CTNAG 2 cut(s) 221, 384
HpySE526I ACGT 1 cut(s) 77
Hsp92I GRCGYC 1 cut(s) 77
Kzo9I GATC 3 cut(s) 259, 267, 345
LmnI GCTCC 1 cut(s) 143
Lsp1109I GCAGC 2 cut(s) 139, 284
LweI GCATC 2 cut(s) 40, 110
MabI ACCWGGT 1 cut(s) 416
MaeI CTAG 1 cut(s) 17
MaeII ACGT 1 cut(s) 77
MalI GATC 3 cut(s) 261, 269, 347
MboI GATC 3 cut(s) 259, 267, 345
MlsI TGGCCA 1 cut(s) 43
MluNI TGGCCA 1 cut(s) 43
MmeI TCCRAC 1 cut(s) 212
MnlI CCTC 3 cut(s) 77, 132, 407
Mox20I TGGCCA 1 cut(s) 43
MscI TGGCCA 1 cut(s) 43
Msp20I TGGCCA 1 cut(s) 43
MspR9I CCNGG 2 cut(s) 265, 418
MvaI CCWGG 2 cut(s) 265, 418
MvnI CGCG 1 cut(s) 106
MwoI GCNNNNNNNGC 3 cut(s) 118, 389, 430
NdeI CATATG 1 cut(s) 281
NdeII GATC 3 cut(s) 259, 267, 345
NlaIV GGNNCC 2 cut(s) 227, 415
PfeI GAWTC 2 cut(s) 235, 254
PkrI GCNGC 2 cut(s) 154, 274
Psp6I CCWGG 2 cut(s) 263, 416
PspFI CCCAGC 1 cut(s) 185
PspGI CCWGG 2 cut(s) 263, 416
PspN4I GGNNCC 2 cut(s) 227, 415
PspPI GGNCC 1 cut(s) 370
PstI CTGCAG 1 cut(s) 157
SatI GCNGC 2 cut(s) 153, 273
Sau3AI GATC 3 cut(s) 259, 267, 345
Sau96I GGNCC 1 cut(s) 370
ScrFI CCNGG 2 cut(s) 265, 418
SetI ASST 5 cut(s) 80, 167, 340, 390, 419
SexAI ACCWGGT 1 cut(s) 416
SfaNI GCATC 2 cut(s) 40, 110
SfcI CTRYAG 1 cut(s) 153
SsiI CCGC 1 cut(s) 373
SspMI CTAG 1 cut(s) 17
StyD4I CCNGG 2 cut(s) 263, 416
TaaI ACNGT 1 cut(s) 230
TaiI ACGT 1 cut(s) 80
TaqI TCGA 5 cut(s) 35, 57, 293, 348, 399
TfiI GAWTC 2 cut(s) 235, 254
TseI GCWGC 2 cut(s) 152, 272
TspDTI ATGAA 3 cut(s) 196, 206, 279
XcmI CCANNNNNNNNNTGG 1 cut(s) 36
XspI CTAG 1 cut(s) 17
ZraI GACGTC 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.