Rh5DG319000

Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Reverse (-)
41061416 .. 41062275
860 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG319000.1

Sequence Viewer

Length: 474 bp
ATGACGTCGTTTCGGCTCTTGTCAGGGGCATCGCGTAGGCTTCTGAAGCCTCCTTCACTCTCTCGCTCCCATCTCTCTGCTGCAGTCTCTACCTATCCCCCAACCACCAAACCCAGCCCTAAAGAAACGCCTTTCATTCCATTTCATCTCAGGCACCGTTGGATTCCCAGTTATCATCTTGATTCTGATCCCAGGATCGCAGCCCACATATGCACTTCATCGAACAAGGACGACAATCGGGTCAGCGATGACCCGAAAGCCCAAGCTTCTTGGATCGACGCTTATTTGCCTACGCAGGCCCGCCCTTATGCTAAGCTGGCTCGCCTCGACAAGCCCATTGGCACCTGGTTGCTTGCTTGGCCTTGTATGTGGTCAATAACATTGGCAGCAAGTCCAGGACACCTTAATATCGATGTTGACACTACTTGGATGTTGGGCTTTTTTTTTAAGAGGCGCCGCATGTACCATAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

157

Amino Acids

17.97

Weight (kDa)

10.12

Isoelectric Point (pI)

62.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020560)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0044931
rosa_laevigata RLG00000034312
rosa_multiflora Rmu_sc0008894.1_g000005
rosa_rugosa Rorug05G0219600
rosa_samantha Rh5BG308500 Rh5DG319000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 239
AatII GACGTC 1 cut(s) 8
AccB1I GGYRCC 3 cut(s) 153, 341, 453
AccII CGCG 1 cut(s) 34
AciI CCGC 2 cut(s) 301, 457
AclWI GGATC 3 cut(s) 182, 203, 281
AcuI CTGAAG 1 cut(s) 65
AcyI GRCGYC 2 cut(s) 5, 454
AfaI GTAC 1 cut(s) 464
AjnI CCWGG 3 cut(s) 191, 344, 394
AluBI AGCT 2 cut(s) 266, 316
AluI AGCT 2 cut(s) 266, 316
Alw26I GTCTC 1 cut(s) 91
AlwI GGATC 3 cut(s) 182, 203, 281
AoxI GGCC 2 cut(s) 297, 359
ApeKI GCWGC 3 cut(s) 80, 200, 386
AspLEI GCGC 1 cut(s) 456
AspS9I GGNCC 1 cut(s) 298
BanI GGYRCC 3 cut(s) 153, 341, 453
BbvI GCAGC 3 cut(s) 67, 212, 398
BccI CCATC 1 cut(s) 78
BciT130I CCWGG 3 cut(s) 193, 346, 396
BcoDI GTCTC 1 cut(s) 91
BfmI CTRYAG 1 cut(s) 81
BfoI RGCGCY 1 cut(s) 457
BisI GCNGC 4 cut(s) 81, 201, 387, 457
BlpI GCTNAGC 1 cut(s) 312
BlsI GCNGC 4 cut(s) 82, 202, 388, 458
Bme1390I CCNGG 3 cut(s) 193, 346, 396
BmgT120I GGNCC 1 cut(s) 298
BmiI GGNNCC 3 cut(s) 155, 343, 455
BmrFI CCNGG 3 cut(s) 193, 346, 396
BmrI ACTGGG 1 cut(s) 162
BmsI GCATC 1 cut(s) 38
BmuI ACTGGG 1 cut(s) 162
Bpu1102I GCTNAGC 1 cut(s) 312
Bsa29I ATCGAT 1 cut(s) 411
BsaBI GATNNNNATC 1 cut(s) 186
BsaHI GRCGYC 2 cut(s) 5, 454
BsaJI CCNNGG 1 cut(s) 191
Bse1I ACTGG 1 cut(s) 168
Bse8I GATNNNNATC 1 cut(s) 186
BseBI CCWGG 3 cut(s) 193, 346, 396
BseCI ATCGAT 1 cut(s) 411
BseDI CCNNGG 1 cut(s) 191
BseGI GGATG 1 cut(s) 435
BseJI GATNNNNATC 1 cut(s) 186
BseMII CTCAG 1 cut(s) 163
BseNI ACTGG 1 cut(s) 168
BseXI GCAGC 3 cut(s) 67, 212, 398
BseYI CCCAGC 1 cut(s) 113
Bsh1236I CGCG 1 cut(s) 34
BshFI GGCC 2 cut(s) 299, 361
BshNI GGYRCC 3 cut(s) 153, 341, 453
BshVI ATCGAT 1 cut(s) 411
BsmAI GTCTC 1 cut(s) 91
BsnI GGCC 2 cut(s) 299, 361
Bsp143I GATC 3 cut(s) 187, 195, 273
Bsp1720I GCTNAGC 1 cut(s) 312
BspACI CCGC 2 cut(s) 301, 457
BspANI GGCC 2 cut(s) 299, 361
BspCNI CTCAG 1 cut(s) 162
BspDI ATCGAT 1 cut(s) 411
BspFNI CGCG 1 cut(s) 34
BspLI GGNNCC 3 cut(s) 155, 343, 455
BspMAI CTGCAG 1 cut(s) 85
BspPI GGATC 3 cut(s) 182, 203, 281
BspT107I GGYRCC 3 cut(s) 153, 341, 453
BsrI ACTGG 1 cut(s) 168
BssECI CCNNGG 1 cut(s) 191
BssMI GATC 3 cut(s) 187, 195, 273
BssNI GRCGYC 2 cut(s) 5, 454
Bst2UI CCWGG 3 cut(s) 193, 346, 396
Bst4CI ACNGT 1 cut(s) 158
BstACI GRCGYC 2 cut(s) 5, 454
BstC8I GCNNGC 5 cut(s) 297, 301, 318, 322, 354
BstDEI CTNAG 2 cut(s) 149, 312
BstF5I GGATG 1 cut(s) 435
BstFNI CGCG 1 cut(s) 34
BstH2I RGCGCY 1 cut(s) 457
BstHHI GCGC 1 cut(s) 456
BstKTI GATC 3 cut(s) 190, 198, 276
BstMAI GTCTC 1 cut(s) 91
BstMBI GATC 3 cut(s) 187, 195, 273
BstMWI GCNNNNNNNGC 3 cut(s) 46, 317, 358
BstNI CCWGG 3 cut(s) 193, 346, 396
BstNSI RCATGY 1 cut(s) 463
BstSCI CCNGG 3 cut(s) 191, 344, 394
BstSFI CTRYAG 1 cut(s) 81
BstUI CGCG 1 cut(s) 34
BstV1I GCAGC 3 cut(s) 67, 212, 398
Bsu15I ATCGAT 1 cut(s) 411
BsuRI GGCC 2 cut(s) 299, 361
BsuTUI ATCGAT 1 cut(s) 411
BtgZI GCGATG 2 cut(s) 15, 261
BtsCI GGATG 1 cut(s) 435
Cac8I GCNNGC 5 cut(s) 297, 301, 318, 322, 354
CfoI GCGC 1 cut(s) 456
Cfr13I GGNCC 1 cut(s) 298
ClaI ATCGAT 1 cut(s) 411
CseI GACGC 1 cut(s) 287
CsiI ACCWGGT 1 cut(s) 344
Csp6I GTAC 1 cut(s) 463
CviAII CATG 1 cut(s) 460
CviQI GTAC 1 cut(s) 463
DdeI CTNAG 2 cut(s) 149, 312
DinI GGCGCC 1 cut(s) 455
DpnI GATC 3 cut(s) 189, 197, 275
DpnII GATC 3 cut(s) 187, 195, 273
DrdI GACNNNNNNGTC 1 cut(s) 239
DseDI GACNNNNNNGTC 1 cut(s) 239
Eco57I CTGAAG 1 cut(s) 65
EcoRII CCWGG 3 cut(s) 191, 344, 394
EgeI GGCGCC 1 cut(s) 455
EheI GGCGCC 1 cut(s) 455
FaeI CATG 1 cut(s) 463
FaiI YATR 6 cut(s) 209, 211, 309, 368, 461, 468
FatI CATG 1 cut(s) 459
FauI CCCGC 1 cut(s) 308
FauNDI CATATG 1 cut(s) 209
Fnu4HI GCNGC 4 cut(s) 81, 201, 387, 457
FokI GGATG 1 cut(s) 442
Fsp4HI GCNGC 4 cut(s) 81, 201, 387, 457
GlaI GCGC 1 cut(s) 455
GluI GCNGC 4 cut(s) 81, 201, 387, 457
GsaI CCCAGC 1 cut(s) 117
HaeII RGCGCY 1 cut(s) 457
HaeIII GGCC 2 cut(s) 299, 361
HgaI GACGC 1 cut(s) 287
HhaI GCGC 1 cut(s) 456
Hin1I GRCGYC 2 cut(s) 5, 454
Hin1II CATG 1 cut(s) 463
Hin6I GCGC 1 cut(s) 454
HinP1I GCGC 1 cut(s) 454
HincII GTYRAC 1 cut(s) 418
HindII GTYRAC 1 cut(s) 418
HindIII AAGCTT 1 cut(s) 264
HinfI GANTC 2 cut(s) 163, 182
Hpy166II GTNNAC 1 cut(s) 418
Hpy188I TCNGA 2 cut(s) 45, 187
Hpy188III TCNNGA 1 cut(s) 179
Hpy8I GTNNAC 1 cut(s) 418
Hpy99I CGWCG 2 cut(s) 10, 281
HpyAV CCTTC 1 cut(s) 63
HpyCH4III ACNGT 1 cut(s) 158
HpyCH4IV ACGT 1 cut(s) 5
HpyCH4V TGCA 2 cut(s) 83, 213
HpyF10VI GCNNNNNNNGC 3 cut(s) 46, 317, 358
HpyF3I CTNAG 2 cut(s) 149, 312
HpySE526I ACGT 1 cut(s) 5
Hsp92I GRCGYC 2 cut(s) 5, 454
Hsp92II CATG 1 cut(s) 463
HspAI GCGC 1 cut(s) 454
KasI GGCGCC 1 cut(s) 453
Kzo9I GATC 3 cut(s) 187, 195, 273
LmnI GCTCC 1 cut(s) 71
Lsp1109I GCAGC 3 cut(s) 67, 212, 398
LweI GCATC 1 cut(s) 38
MabI ACCWGGT 1 cut(s) 344
MaeII ACGT 1 cut(s) 5
MalI GATC 3 cut(s) 189, 197, 275
MboI GATC 3 cut(s) 187, 195, 273
Mly113I GGCGCC 1 cut(s) 454
MmeI TCCRAC 1 cut(s) 140
MnlI CCTC 3 cut(s) 60, 335, 444
MseI TTAA 2 cut(s) 405, 447
MspR9I CCNGG 3 cut(s) 193, 346, 396
MvaI CCWGG 3 cut(s) 193, 346, 396
MvnI CGCG 1 cut(s) 34
MwoI GCNNNNNNNGC 3 cut(s) 46, 317, 358
NarI GGCGCC 1 cut(s) 454
NdeI CATATG 1 cut(s) 209
NdeII GATC 3 cut(s) 187, 195, 273
NlaIII CATG 1 cut(s) 463
NlaIV GGNNCC 3 cut(s) 155, 343, 455
NspI RCATGY 1 cut(s) 463
PfeI GAWTC 2 cut(s) 163, 182
PfoI TCCNGGA 1 cut(s) 394
PkrI GCNGC 4 cut(s) 82, 202, 388, 458
PluTI GGCGCC 1 cut(s) 457
Psp6I CCWGG 3 cut(s) 191, 344, 394
PspFI CCCAGC 1 cut(s) 113
PspGI CCWGG 3 cut(s) 191, 344, 394
PspN4I GGNNCC 3 cut(s) 155, 343, 455
PspPI GGNCC 1 cut(s) 298
PstI CTGCAG 1 cut(s) 85
RsaI GTAC 1 cut(s) 464
RsaNI GTAC 1 cut(s) 463
SaqAI TTAA 2 cut(s) 405, 447
SatI GCNGC 4 cut(s) 81, 201, 387, 457
Sau3AI GATC 3 cut(s) 187, 195, 273
Sau96I GGNCC 1 cut(s) 298
ScrFI CCNGG 3 cut(s) 193, 346, 396
SetI ASST 6 cut(s) 8, 95, 268, 318, 347, 405
SexAI ACCWGGT 1 cut(s) 344
SfaNI GCATC 1 cut(s) 38
SfcI CTRYAG 1 cut(s) 81
SfoI GGCGCC 1 cut(s) 455
SsiI CCGC 2 cut(s) 301, 457
SspDI GGCGCC 1 cut(s) 453
StyD4I CCNGG 3 cut(s) 191, 344, 394
TaaI ACNGT 1 cut(s) 158
TaiI ACGT 1 cut(s) 8
TaqI TCGA 4 cut(s) 221, 276, 327, 411
TauI GCSGC 1 cut(s) 459
TfiI GAWTC 2 cut(s) 163, 182
Tru1I TTAA 2 cut(s) 405, 447
Tru9I TTAA 2 cut(s) 405, 447
TseI GCWGC 3 cut(s) 80, 200, 386
TspDTI ATGAA 3 cut(s) 124, 134, 207
XceI RCATGY 1 cut(s) 463
ZraI GACGTC 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.