RLG00000034312

Protein transport protein Sec24-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0020560
Physical Location & Seq
Reverse (-)
40416504 .. 40420673
4170 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034312

Sequence Viewer

Length: 780 bp
ATGTTGTTAGACGGAAGTTCAGTGACTGCCCAAATTGATGTTGCATTCTCACAATGGCCCGAACTGCAGCCTTTACCCCGATTAGTTTTTGCATTGCTTCGAAATCCTCTGCTCCTTTTTCATGAAGAAGGTGTTCACCCCGATTACCGAATCTACCTACAGTGTCTTTTCAGTGCACTTGAACAAAGTTCACTTCATCGTGCCGTGTATCCAGTCCTCACCTCATATTCTACCCCCGATAAACTACCATACCCACGCCATTCATTGAGTCGTGCTGCACTGATTACCAGTGGTAGTCCGATATTTTTCCTTGATGCATTCACTGCTCTTATTGTGTTCTATTCTTCAACGGCAGACCCTACTCTACCTTTTCCTCCACCCCATGATTTCGAACCAGTCCTCAAAATGACGTCGTTTCGGCTCTTGTTAGGGGCATCGCGTAGGCTTCTGAAGCCTCCTTCACTCTCTCGCTCCCATCTCTCTGCTGCAATCTCTACCTATCCCCCAACCACCAAACCCAGCCCTAAAGAAACGCCTTTCATTCCATTTCATCTCAGGCACCGTTGGATTCCCAGTTATCATCTTGATTCTGATCCCAAGCTCGTAGCCCACATGTGCACTTCATCGAACAAGGATGACAATCGGGTCAGCGATGACCCGAAAGCCCAAGCTTCTTGGATCGACGCTTATTTGCCTACGCAGGCCCACCGTTATGCTAAGCTGGCTCGCCTCGACAAGCCCATTGGCACCTGGTTGCTTGCTTGGCCTTATATGTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Sec23_helical Sec23_trunk zf-Sec23_Sec24

Protein Analysis

260

Amino Acids

29.4

Weight (kDa)

9.02

Isoelectric Point (pI)

51.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec23_helical PF04815 21 - 65 8.2e-06 Sec23/Sec24 helical domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020560)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0044931
rosa_laevigata RLG00000034312
rosa_multiflora Rmu_sc0008894.1_g000005
rosa_rugosa Rorug05G0219600
rosa_samantha Rh5BG308500 Rh5DG319000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 644
AatII GACGTC 1 cut(s) 413
AccB1I GGYRCC 2 cut(s) 558, 746
AccII CGCG 1 cut(s) 439
AclWI GGATC 2 cut(s) 587, 686
AcuI CTGAAG 1 cut(s) 470
AcyI GRCGYC 1 cut(s) 410
AflIII ACRYGT 1 cut(s) 612
AgsI TTSAA 2 cut(s) 182, 348
AjnI CCWGG 1 cut(s) 749
AluBI AGCT 3 cut(s) 601, 671, 721
AluI AGCT 3 cut(s) 601, 671, 721
Alw21I GWGCWC 2 cut(s) 178, 620
Alw44I GTGCAC 2 cut(s) 174, 616
AlwI GGATC 2 cut(s) 587, 686
AlwNI CAGNNNCTG 1 cut(s) 26
AoxI GGCC 3 cut(s) 56, 702, 764
ApaLI GTGCAC 2 cut(s) 174, 616
ApeKI GCWGC 3 cut(s) 67, 275, 485
Asp700I GAANNNNTTC 1 cut(s) 132
AspS9I GGNCC 2 cut(s) 57, 703
AsuHPI GGTGA 2 cut(s) 128, 211
AsuII TTCGAA 2 cut(s) 100, 390
BaeGI GKGCMC 2 cut(s) 178, 620
BanI GGYRCC 2 cut(s) 558, 746
Bbv12I GWGCWC 2 cut(s) 178, 620
BbvI GCAGC 3 cut(s) 79, 262, 472
BccI CCATC 1 cut(s) 483
BceAI ACGGC 2 cut(s) 188, 366
BciT130I CCWGG 1 cut(s) 751
BciVI GTATCC 1 cut(s) 219
BfmI CTRYAG 2 cut(s) 65, 158
BfuI GTATCC 1 cut(s) 219
BisI GCNGC 3 cut(s) 68, 276, 486
BlpI GCTNAGC 1 cut(s) 717
BlsI GCNGC 3 cut(s) 69, 277, 487
Bme1390I CCNGG 1 cut(s) 751
BmgT120I GGNCC 2 cut(s) 57, 703
BmiI GGNNCC 2 cut(s) 560, 748
BmrFI CCNGG 1 cut(s) 751
BmrI ACTGGG 1 cut(s) 567
BmsI GCATC 2 cut(s) 304, 443
BmuI ACTGGG 1 cut(s) 567
Bpu1102I GCTNAGC 1 cut(s) 717
Bpu14I TTCGAA 2 cut(s) 100, 390
BsaBI GATNNNNATC 2 cut(s) 591, 639
BsaHI GRCGYC 1 cut(s) 410
Bse1I ACTGG 4 cut(s) 212, 288, 395, 573
Bse3DI GCAATG 1 cut(s) 92
Bse8I GATNNNNATC 2 cut(s) 591, 639
BseBI CCWGG 1 cut(s) 751
BseGI GGATG 1 cut(s) 640
BseJI GATNNNNATC 2 cut(s) 591, 639
BseMI GCAATG 1 cut(s) 92
BseMII CTCAG 1 cut(s) 568
BseNI ACTGG 4 cut(s) 212, 288, 395, 573
BseSI GKGCMC 2 cut(s) 178, 620
BseXI GCAGC 3 cut(s) 79, 262, 472
BseYI CCCAGC 1 cut(s) 518
BsgI GTGCAG 1 cut(s) 261
Bsh1236I CGCG 1 cut(s) 439
BshFI GGCC 3 cut(s) 58, 704, 766
BshNI GGYRCC 2 cut(s) 558, 746
BsiHKAI GWGCWC 2 cut(s) 178, 620
BsmI GAATGC 2 cut(s) 44, 317
BsnI GGCC 3 cut(s) 58, 704, 766
Bsp119I TTCGAA 2 cut(s) 100, 390
Bsp1286I GDGCHC 2 cut(s) 178, 620
Bsp143I GATC 2 cut(s) 592, 678
Bsp1720I GCTNAGC 1 cut(s) 717
BspANI GGCC 3 cut(s) 58, 704, 766
BspCNI CTCAG 1 cut(s) 567
BspFNI CGCG 1 cut(s) 439
BspHI TCATGA 1 cut(s) 121
BspLI GGNNCC 2 cut(s) 560, 748
BspMAI CTGCAG 1 cut(s) 69
BspPI GGATC 2 cut(s) 587, 686
BspT104I TTCGAA 2 cut(s) 100, 390
BspT107I GGYRCC 2 cut(s) 558, 746
BsrDI GCAATG 1 cut(s) 92
BsrI ACTGG 4 cut(s) 212, 288, 395, 573
BssMI GATC 2 cut(s) 592, 678
BssNI GRCGYC 1 cut(s) 410
Bst2UI CCWGG 1 cut(s) 751
Bst4CI ACNGT 3 cut(s) 162, 563, 710
BstACI GRCGYC 1 cut(s) 410
BstAPI GCANNNNNTGC 1 cut(s) 323
BstBI TTCGAA 2 cut(s) 100, 390
BstC8I GCNNGC 4 cut(s) 702, 723, 727, 759
BstDEI CTNAG 2 cut(s) 554, 717
BstF5I GGATG 1 cut(s) 640
BstFNI CGCG 1 cut(s) 439
BstKTI GATC 2 cut(s) 595, 681
BstMBI GATC 2 cut(s) 592, 678
BstMWI GCNNNNNNNGC 5 cut(s) 64, 323, 451, 722, 763
BstNI CCWGG 1 cut(s) 751
BstNSI RCATGY 1 cut(s) 616
BstSCI CCNGG 1 cut(s) 749
BstSFI CTRYAG 2 cut(s) 65, 158
BstSLI GKGCMC 2 cut(s) 178, 620
BstUI CGCG 1 cut(s) 439
BstV1I GCAGC 3 cut(s) 79, 262, 472
BsuI GTATCC 1 cut(s) 219
BsuRI GGCC 3 cut(s) 58, 704, 766
BtgZI GCGATG 2 cut(s) 420, 666
BtsCI GGATG 1 cut(s) 640
BtsI GCAGTG 1 cut(s) 321
BtsIMutI CAGTG 6 cut(s) 27, 167, 178, 278, 295, 321
Cac8I GCNNGC 4 cut(s) 702, 723, 727, 759
CaiI CAGNNNCTG 1 cut(s) 26
CciI TCATGA 1 cut(s) 121
Cfr13I GGNCC 2 cut(s) 57, 703
CseI GACGC 1 cut(s) 692
CsiI ACCWGGT 1 cut(s) 749
CviAII CATG 3 cut(s) 122, 383, 613
DdeI CTNAG 2 cut(s) 554, 717
DpnI GATC 2 cut(s) 594, 680
DpnII GATC 2 cut(s) 592, 678
DrdI GACNNNNNNGTC 1 cut(s) 644
DseDI GACNNNNNNGTC 1 cut(s) 644
Eco57I CTGAAG 1 cut(s) 470
EcoRII CCWGG 1 cut(s) 749
EcoT22I ATGCAT 1 cut(s) 319
FaeI CATG 3 cut(s) 125, 386, 616
FaiI YATR 8 cut(s) 123, 226, 250, 384, 614, 714, 771, 773
FatI CATG 3 cut(s) 121, 382, 612
Fnu4HI GCNGC 3 cut(s) 68, 276, 486
FokI GGATG 1 cut(s) 647
Fsp4HI GCNGC 3 cut(s) 68, 276, 486
GluI GCNGC 3 cut(s) 68, 276, 486
GsaI CCCAGC 1 cut(s) 522
HaeIII GGCC 3 cut(s) 58, 704, 766
HgaI GACGC 1 cut(s) 692
Hin1I GRCGYC 1 cut(s) 410
Hin1II CATG 3 cut(s) 125, 386, 616
HindIII AAGCTT 1 cut(s) 669
HinfI GANTC 4 cut(s) 150, 268, 568, 587
HphI GGTGA 2 cut(s) 128, 211
Hpy166II GTNNAC 4 cut(s) 136, 176, 191, 618
Hpy188I TCNGA 3 cut(s) 300, 450, 592
Hpy188III TCNNGA 2 cut(s) 122, 584
Hpy8I GTNNAC 4 cut(s) 136, 176, 191, 618
Hpy99I CGWCG 2 cut(s) 415, 686
HpyAV CCTTC 2 cut(s) 122, 468
HpyCH4III ACNGT 3 cut(s) 162, 563, 710
HpyCH4IV ACGT 1 cut(s) 410
HpyCH4V TGCA 8 cut(s) 44, 67, 92, 176, 278, 317, 488, 618
HpyF10VI GCNNNNNNNGC 5 cut(s) 64, 323, 451, 722, 763
HpyF3I CTNAG 2 cut(s) 554, 717
HpySE526I ACGT 1 cut(s) 410
Hsp92I GRCGYC 1 cut(s) 410
Hsp92II CATG 3 cut(s) 125, 386, 616
Kzo9I GATC 2 cut(s) 592, 678
LmnI GCTCC 2 cut(s) 117, 476
Lsp1109I GCAGC 3 cut(s) 79, 262, 472
LweI GCATC 2 cut(s) 304, 443
MabI ACCWGGT 1 cut(s) 749
MaeII ACGT 1 cut(s) 410
MaeIII GTNAC 1 cut(s) 22
MalI GATC 2 cut(s) 594, 680
MboI GATC 2 cut(s) 592, 678
MboII GAAGA 2 cut(s) 137, 336
MhlI GDGCHC 2 cut(s) 178, 620
MluCI AATT 1 cut(s) 33
MlyI GAGTC 1 cut(s) 277
MmeI TCCRAC 1 cut(s) 545
MnlI CCTC 7 cut(s) 117, 227, 232, 384, 410, 465, 740
Mph1103I ATGCAT 1 cut(s) 319
MroXI GAANNNNTTC 1 cut(s) 132
MslI CAYNNNNRTG 1 cut(s) 711
MspR9I CCNGG 1 cut(s) 751
Mva1269I GAATGC 2 cut(s) 44, 317
MvaI CCWGG 1 cut(s) 751
MvnI CGCG 1 cut(s) 439
MwoI GCNNNNNNNGC 5 cut(s) 64, 323, 451, 722, 763
NdeII GATC 2 cut(s) 592, 678
NlaIII CATG 3 cut(s) 125, 386, 616
NlaIV GGNNCC 2 cut(s) 560, 748
NmuCI GTSAC 1 cut(s) 22
NsiI ATGCAT 1 cut(s) 319
NspI RCATGY 1 cut(s) 616
NspV TTCGAA 2 cut(s) 100, 390
PagI TCATGA 1 cut(s) 121
PciI ACATGT 1 cut(s) 612
PctI GAATGC 2 cut(s) 44, 317
PdmI GAANNNNTTC 1 cut(s) 132
PfeI GAWTC 3 cut(s) 150, 568, 587
PkrI GCNGC 3 cut(s) 69, 277, 487
PleI GAGTC 1 cut(s) 276
PpsI GAGTC 1 cut(s) 276
PscI ACATGT 1 cut(s) 612
Psp6I CCWGG 1 cut(s) 749
PspFI CCCAGC 1 cut(s) 518
PspGI CCWGG 1 cut(s) 749
PspN4I GGNNCC 2 cut(s) 560, 748
PspPI GGNCC 2 cut(s) 57, 703
PstI CTGCAG 1 cut(s) 69
PstNI CAGNNNCTG 1 cut(s) 26
RseI CAYNNNNRTG 1 cut(s) 711
SatI GCNGC 3 cut(s) 68, 276, 486
Sau3AI GATC 2 cut(s) 592, 678
Sau96I GGNCC 2 cut(s) 57, 703
SchI GAGTC 1 cut(s) 277
ScrFI CCNGG 1 cut(s) 751
SduI GDGCHC 2 cut(s) 178, 620
SexAI ACCWGGT 1 cut(s) 749
SfaNI GCATC 2 cut(s) 304, 443
SfcI CTRYAG 2 cut(s) 65, 158
SfuI TTCGAA 2 cut(s) 100, 390
SmiMI CAYNNNNRTG 1 cut(s) 711
Sse9I AATT 1 cut(s) 33
StyD4I CCNGG 1 cut(s) 749
TaaI ACNGT 3 cut(s) 162, 563, 710
TaiI ACGT 1 cut(s) 413
TaqI TCGA 5 cut(s) 100, 390, 626, 681, 732
TasI AATT 1 cut(s) 33
TfiI GAWTC 3 cut(s) 150, 568, 587
TscAI CASTG 6 cut(s) 27, 167, 178, 285, 295, 328
TseFI GTSAC 1 cut(s) 22
TseI GCWGC 3 cut(s) 67, 275, 485
Tsp45I GTSAC 1 cut(s) 22
TspDTI ATGAA 7 cut(s) 110, 138, 185, 252, 529, 539, 612
TspGWI ACGGA 1 cut(s) 27
TspRI CASTG 6 cut(s) 27, 167, 178, 285, 295, 328
VneI GTGCAC 2 cut(s) 174, 616
XceI RCATGY 1 cut(s) 616
XmnI GAANNNNTTC 1 cut(s) 132
ZraI GACGTC 1 cut(s) 411
Zsp2I ATGCAT 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.