RchiOBHm_Chr5g0066971

Universal stress protein A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0016294
Physical Location & Seq
Reverse (-)
72975429 .. 72978526
3098 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 495 bp
ATGACAAAGGATAGAAAATTAGGGTTTGCGGTGGATTTCTCGAAGGGAAGCAAGACTGCTCTGAAATGGGCTCTTCATAATCTGAGTGATAAAGGTGACACCTTGTATGTCATCCATGTCAAGCCCCAACAAGGCAGTGAGAGCCGCAACCTTCTTTGGTCTACCACCGGATCACCTCTGATTCCGTTTGCGGAGTTTCGTCGAAAGGACGTTATGGAGAACTACGAGGTTGAGCTTGATCCGGAGGTCTTGGACTTGCTTGACACTGCTATTAAGCAAAATCATGTAACGGTGATAGCAAAGCTCTACTGGGGAGATGCAAGAGACAAACTTTGTGAAGCAGTCGAAGATTTAAAGCTCGACTGCTTGGTCCTTGGCAGCAGGGGCCTTGGCACCATCCAAAGGGTGCTGCTGGGAAGTGTATCAAGCCACGTTATGGCGAATGCAAATTGCCCCGTTACCATTGTCAAGGATCAGAAAGCTTACGGTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

164

Amino Acids

18.22

Weight (kDa)

6.9

Isoelectric Point (pI)

20.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 5 - 157 1.5e-28 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016294)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g37220
malus_domestica MD03G1082800.v1.1
prunus_persica Prupe.6G067100_v2.0.a1
pyrus_communis pycom03g06590 pycom11g07560
rosa_chinensis RchiOBHm_Chr5g0066971
rosa_laevigata RLG00000035897
rosa_multiflora Rmu_sc0008378.1_g000004
rosa_roxburghii Rroxscaffold_1G00014160
rosa_rugosa Rorug05G0380100
rosa_samantha Rh5AG439800 Rh5BG456800 Rh5CG478900 Rh5DG471600
rosa_wichuraiana Rw5G041130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 368
AccB1I GGYRCC 1 cut(s) 392
AccB7I CCANNNNNTGG 1 cut(s) 436
AccI GTMKAC 1 cut(s) 161
AccIII TCCGGA 1 cut(s) 241
AciI CCGC 3 cut(s) 29, 145, 191
AclWI GGATC 3 cut(s) 178, 233, 480
AfiI CCNNNNNNNGG 3 cut(s) 131, 402, 436
AluBI AGCT 4 cut(s) 235, 304, 358, 482
AluI AGCT 4 cut(s) 235, 304, 358, 482
Alw26I GTCTC 1 cut(s) 318
AlwI GGATC 3 cut(s) 178, 233, 480
Aor13HI TCCGGA 1 cut(s) 241
AoxI GGCC 1 cut(s) 385
ApeKI GCWGC 2 cut(s) 378, 409
AspS9I GGNCC 2 cut(s) 370, 385
AsuHPI GGTGA 3 cut(s) 107, 165, 304
AvaII GGWCC 1 cut(s) 370
BanI GGYRCC 1 cut(s) 392
BanII GRGCYC 1 cut(s) 73
BbvI GCAGC 2 cut(s) 390, 396
BccI CCATC 1 cut(s) 404
BcoDI GTCTC 1 cut(s) 318
BisI GCNGC 3 cut(s) 145, 379, 410
BlsI GCNGC 3 cut(s) 146, 380, 411
Bme18I GGWCC 1 cut(s) 370
BmgT120I GGNCC 2 cut(s) 370, 385
BmiI GGNNCC 2 cut(s) 386, 394
BmrI ACTGGG 1 cut(s) 319
BmsI GCATC 1 cut(s) 307
BmuI ACTGGG 1 cut(s) 319
BsaJI CCNNGG 2 cut(s) 373, 388
BsaWI WCCGGW 2 cut(s) 167, 241
Bsc4I CCNNNNNNNGG 3 cut(s) 131, 402, 436
Bse1I ACTGG 1 cut(s) 314
BseAI TCCGGA 1 cut(s) 241
BseDI CCNNGG 2 cut(s) 373, 388
BseGI GGATG 2 cut(s) 111, 396
BseLI CCNNNNNNNGG 3 cut(s) 131, 402, 436
BseMII CTCAG 1 cut(s) 74
BseNI ACTGG 1 cut(s) 314
BseXI GCAGC 2 cut(s) 390, 396
BseYI CCCAGC 1 cut(s) 412
BshFI GGCC 1 cut(s) 387
BshNI GGYRCC 1 cut(s) 392
BsiSI CCGG 2 cut(s) 168, 242
BslI CCNNNNNNNGG 3 cut(s) 131, 402, 436
BsmAI GTCTC 1 cut(s) 318
BsmI GAATGC 1 cut(s) 448
BsnI GGCC 1 cut(s) 387
Bsp1286I GDGCHC 1 cut(s) 73
Bsp13I TCCGGA 1 cut(s) 241
Bsp143I GATC 3 cut(s) 170, 238, 472
BspACI CCGC 3 cut(s) 29, 145, 191
BspANI GGCC 1 cut(s) 387
BspCNI CTCAG 1 cut(s) 75
BspEI TCCGGA 1 cut(s) 241
BspLI GGNNCC 2 cut(s) 386, 394
BspPI GGATC 3 cut(s) 178, 233, 480
BspQI GCTCTTC 1 cut(s) 78
BspT107I GGYRCC 1 cut(s) 392
BsrI ACTGG 1 cut(s) 314
BssECI CCNNGG 2 cut(s) 373, 388
BssMI GATC 3 cut(s) 170, 238, 472
BssT1I CCWWGG 2 cut(s) 373, 388
Bst4CI ACNGT 2 cut(s) 292, 488
Bst6I CTCTTC 1 cut(s) 78
BstDEI CTNAG 1 cut(s) 83
BstF5I GGATG 2 cut(s) 111, 396
BstKTI GATC 3 cut(s) 173, 241, 475
BstMAI GTCTC 1 cut(s) 318
BstMBI GATC 3 cut(s) 170, 238, 472
BstMWI GCNNNNNNNGC 2 cut(s) 141, 384
BstV1I GCAGC 2 cut(s) 390, 396
BsuRI GGCC 1 cut(s) 387
BtsCI GGATG 2 cut(s) 111, 396
BtsI GCAGTG 2 cut(s) 142, 264
BtsIMutI CAGTG 2 cut(s) 142, 264
Cfr13I GGNCC 2 cut(s) 370, 385
CviAII CATG 2 cut(s) 116, 284
CviJI RGCY 9 cut(s) 71, 124, 144, 235, 304, 358, 387, 429, 482
CviKI_1 RGCY 9 cut(s) 71, 124, 144, 235, 304, 358, 387, 429, 482
DdeI CTNAG 1 cut(s) 83
DpnI GATC 3 cut(s) 172, 240, 474
DpnII GATC 3 cut(s) 170, 238, 472
DraI TTTAAA 1 cut(s) 354
DrdI GACNNNNNNGTC 1 cut(s) 368
DseDI GACNNNNNNGTC 1 cut(s) 368
Eam1104I CTCTTC 1 cut(s) 78
EarI CTCTTC 1 cut(s) 78
Eco130I CCWWGG 2 cut(s) 373, 388
Eco24I GRGCYC 1 cut(s) 73
Eco47I GGWCC 1 cut(s) 370
EcoO109I RGGNCCY 1 cut(s) 385
EcoT14I CCWWGG 2 cut(s) 373, 388
EcoT38I GRGCYC 1 cut(s) 73
ErhI CCWWGG 2 cut(s) 373, 388
FaeI CATG 2 cut(s) 119, 287
FaiI YATR 6 cut(s) 78, 108, 117, 215, 285, 437
FatI CATG 2 cut(s) 115, 283
FblI GTMKAC 1 cut(s) 161
Fnu4HI GCNGC 3 cut(s) 145, 379, 410
FokI GGATG 2 cut(s) 98, 383
FriOI GRGCYC 1 cut(s) 73
Fsp4HI GCNGC 3 cut(s) 145, 379, 410
GluI GCNGC 3 cut(s) 145, 379, 410
GsaI CCCAGC 1 cut(s) 416
HaeIII GGCC 1 cut(s) 387
HapII CCGG 2 cut(s) 168, 242
Hin1II CATG 2 cut(s) 119, 287
HindIII AAGCTT 1 cut(s) 480
HinfI GANTC 1 cut(s) 181
HpaII CCGG 2 cut(s) 168, 242
HphI GGTGA 3 cut(s) 107, 165, 304
Hpy166II GTNNAC 1 cut(s) 162
Hpy188I TCNGA 4 cut(s) 63, 84, 180, 477
Hpy188III TCNNGA 2 cut(s) 40, 242
Hpy8I GTNNAC 1 cut(s) 162
Hpy99I CGWCG 1 cut(s) 204
HpyAV CCTTC 2 cut(s) 37, 161
HpyCH4III ACNGT 2 cut(s) 292, 488
HpyCH4IV ACGT 2 cut(s) 210, 432
HpyCH4V TGCA 2 cut(s) 320, 446
HpyF10VI GCNNNNNNNGC 2 cut(s) 141, 384
HpyF3I CTNAG 1 cut(s) 83
HpySE526I ACGT 2 cut(s) 210, 432
Hsp92II CATG 2 cut(s) 119, 287
Kpn2I TCCGGA 1 cut(s) 241
Kzo9I GATC 3 cut(s) 170, 238, 472
LguI GCTCTTC 1 cut(s) 78
LpnPI CCDG 5 cut(s) 181, 255, 295, 367, 398
Lsp1109I GCAGC 2 cut(s) 390, 396
LweI GCATC 1 cut(s) 307
MaeII ACGT 2 cut(s) 210, 432
MaeIII GTNAC 3 cut(s) 95, 286, 457
MalI GATC 3 cut(s) 172, 240, 474
MboI GATC 3 cut(s) 170, 238, 472
MboII GAAGA 2 cut(s) 65, 359
MhlI GDGCHC 1 cut(s) 73
MluCI AATT 2 cut(s) 17, 448
MnlI CCTC 3 cut(s) 186, 220, 238
MroI TCCGGA 1 cut(s) 241
MseI TTAA 2 cut(s) 273, 353
MspI CCGG 2 cut(s) 168, 242
Mva1269I GAATGC 1 cut(s) 448
MwoI GCNNNNNNNGC 2 cut(s) 141, 384
NdeII GATC 3 cut(s) 170, 238, 472
NlaIII CATG 2 cut(s) 119, 287
NlaIV GGNNCC 2 cut(s) 386, 394
NmuCI GTSAC 1 cut(s) 95
PciSI GCTCTTC 1 cut(s) 78
PctI GAATGC 1 cut(s) 448
PfeI GAWTC 1 cut(s) 181
PflMI CCANNNNNTGG 1 cut(s) 436
PkrI GCNGC 3 cut(s) 146, 380, 411
PspFI CCCAGC 1 cut(s) 412
PspN4I GGNNCC 2 cut(s) 386, 394
PspPI GGNCC 2 cut(s) 370, 385
SapI GCTCTTC 1 cut(s) 78
SaqAI TTAA 2 cut(s) 273, 353
SatI GCNGC 3 cut(s) 145, 379, 410
Sau3AI GATC 3 cut(s) 170, 238, 472
Sau96I GGNCC 2 cut(s) 370, 385
SduI GDGCHC 1 cut(s) 73
SfaNI GCATC 1 cut(s) 307
SinI GGWCC 1 cut(s) 370
Sse9I AATT 2 cut(s) 17, 448
SsiI CCGC 3 cut(s) 29, 145, 191
StyI CCWWGG 2 cut(s) 373, 388
TaaI ACNGT 2 cut(s) 292, 488
TaiI ACGT 2 cut(s) 213, 435
TaqI TCGA 4 cut(s) 41, 202, 345, 360
TasI AATT 2 cut(s) 17, 448
TauI GCSGC 1 cut(s) 147
TfiI GAWTC 1 cut(s) 181
Tru1I TTAA 2 cut(s) 273, 353
Tru9I TTAA 2 cut(s) 273, 353
TscAI CASTG 2 cut(s) 142, 271
TseFI GTSAC 1 cut(s) 95
TseI GCWGC 2 cut(s) 378, 409
Tsp45I GTSAC 1 cut(s) 95
TspDTI ATGAA 1 cut(s) 65
TspGWI ACGGA 1 cut(s) 174
TspRI CASTG 2 cut(s) 142, 271
Van91I CCANNNNNTGG 1 cut(s) 436
VpaK11BI GGWCC 1 cut(s) 370
XmiI GTMKAC 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.