Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0020543

Physical Location & Seq

Genomic Coordinates Forward (+)

73777960 .. 73780311

Gene Structure 2352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGATCAAGAAGAATTTGAAATCCCGGAGGTTTAGGTTGAGGTCAAATTACTATAACTACTTGTTGGGATTGTTGGCTAGTTACTCCACTGCTGAGCCTCTACTGAGGTTGGTGATGGGTTTATCACTTTTTAACCCGTCTAGAAAAACTGGCTTTGCTCCTTTTGAGATGACTTCTTCAATCATTGAAGCTCTTTCTTGGTGCTCTATGCTAATTTTAATTGGCTTGGAAACTAGGATTTACATTCGGGAATTCCGATGGTACGTAAGGTTTGGGGTCCTTTACGTCTTGGTAGGAGATGTTGTGCTGCTAAATCTTATTCTTGGAGTGACAGATTCCTACAGCAGGTTAGTTTTTCTTCCTTTCACTCGCTCAATACTGTATTCCCTTTTATTTAATTCCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

135

Amino Acids

15.71

Weight (kDa)

10.06

Isoelectric Point (pI)

48.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020543)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0015431 RchiOBHm_Chr5g0015471 RchiOBHm_Chr5g0067651
rosa_multiflora	Rmu_co8264059.1_g000001
rosa_rugosa	Rorug05G0027600
rosa_wichuraiana	Rw5G045960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	336
AcsI	RAATTY	2 cut(s)	13, 251
AfaI	GTAC	1 cut(s)	263
AfiI	CCNNNNNNNGG	1 cut(s)	345
AgsI	TTSAA	3 cut(s)	19, 180, 188
AluBI	AGCT	1 cut(s)	191
AluI	AGCT	1 cut(s)	191
Alw21I	GWGCWC	1 cut(s)	206
ApeKI	GCWGC	1 cut(s)	307
ApoI	RAATTY	2 cut(s)	13, 251
AspS9I	GGNCC	1 cut(s)	277
AsuC2I	CCSGG	1 cut(s)	25
AsuHPI	GGTGA	1 cut(s)	124
AvaII	GGWCC	1 cut(s)	277
Bbv12I	GWGCWC	1 cut(s)	206
BbvI	GCAGC	1 cut(s)	294
BccI	CCATC	2 cut(s)	109, 252
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	25
BfaI	CTAG	3 cut(s)	78, 141, 234
BfmI	CTRYAG	1 cut(s)	340
BfuAI	ACCTGC	1 cut(s)	336
BisI	GCNGC	1 cut(s)	308
BlpI	GCTNAGC	1 cut(s)	93
BlsI	GCNGC	1 cut(s)	309
Bme1390I	CCNGG	1 cut(s)	25
Bme18I	GGWCC	1 cut(s)	277
BmgT120I	GGNCC	1 cut(s)	277
BmiI	GGNNCC	1 cut(s)	278
BmrFI	CCNGG	1 cut(s)	25
Bpu1102I	GCTNAGC	1 cut(s)	93
BpuMI	CCSGG	1 cut(s)	25
BsaAI	YACGTR	1 cut(s)	265
BsaXI	ACNNNNNCTCC	2 cut(s)	288, 318
Bsc4I	CCNNNNNNNGG	1 cut(s)	345
Bse1I	ACTGG	1 cut(s)	154
BseLI	CCNNNNNNNGG	1 cut(s)	345
BseMII	CTCAG	2 cut(s)	84, 95
BseNI	ACTGG	1 cut(s)	154
BseXI	GCAGC	1 cut(s)	294
BsiHKAI	GWGCWC	1 cut(s)	206
BsiSI	CCGG	1 cut(s)	25
BslI	CCNNNNNNNGG	1 cut(s)	345
Bsp1286I	GDGCHC	1 cut(s)	206
Bsp143I	GATC	1 cut(s)	3
Bsp1720I	GCTNAGC	1 cut(s)	93
BspCNI	CTCAG	2 cut(s)	85, 96
BspLI	GGNNCC	1 cut(s)	278
BspMI	ACCTGC	1 cut(s)	336
BsrI	ACTGG	1 cut(s)	154
BssMI	GATC	1 cut(s)	3
Bst4CI	ACNGT	1 cut(s)	381
BstBAI	YACGTR	1 cut(s)	265
BstDEI	CTNAG	2 cut(s)	93, 104
BstENI	CCTNNNNNAGG	1 cut(s)	343
BstKTI	GATC	1 cut(s)	6
BstMBI	GATC	1 cut(s)	3
BstSCI	CCNGG	1 cut(s)	23
BstSFI	CTRYAG	1 cut(s)	340
BstSNI	TACGTA	1 cut(s)	265
BstV1I	GCAGC	1 cut(s)	294
BtsI	GCAGTG	1 cut(s)	87
BtsIMutI	CAGTG	1 cut(s)	87
BveI	ACCTGC	1 cut(s)	336
Cfr13I	GGNCC	1 cut(s)	277
Csp6I	GTAC	1 cut(s)	262
CviJI	RGCY	5 cut(s)	77, 97, 153, 191, 225
CviKI_1	RGCY	5 cut(s)	77, 97, 153, 191, 225
CviQI	GTAC	1 cut(s)	262
DdeI	CTNAG	2 cut(s)	93, 104
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
Eco105I	TACGTA	1 cut(s)	265
Eco47I	GGWCC	1 cut(s)	277
EcoNI	CCTNNNNNAGG	1 cut(s)	343
EcoO109I	RGGNCCY	1 cut(s)	277
EcoRI	GAATTC	1 cut(s)	251
FaiI	YATR	2 cut(s)	54, 209
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	308
Fsp4HI	GCNGC	1 cut(s)	308
FspBI	CTAG	3 cut(s)	78, 141, 234
GluI	GCNGC	1 cut(s)	308
HapII	CCGG	1 cut(s)	25
HinfI	GANTC	1 cut(s)	335
HpaII	CCGG	1 cut(s)	25
HphI	GGTGA	1 cut(s)	124
Hpy188I	TCNGA	1 cut(s)	257
Hpy188III	TCNNGA	3 cut(s)	7, 141, 248
HpyCH4III	ACNGT	1 cut(s)	381
HpyCH4IV	ACGT	2 cut(s)	264, 285
HpyF3I	CTNAG	2 cut(s)	93, 104
HpySE526I	ACGT	2 cut(s)	264, 285
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	1 cut(s)	3
LmnI	GCTCC	1 cut(s)	163
LpnPI	CCDG	3 cut(s)	38, 135, 331
Lsp1109I	GCAGC	1 cut(s)	294
MaeI	CTAG	3 cut(s)	78, 141, 234
MaeII	ACGT	2 cut(s)	264, 285
MaeIII	GTNAC	2 cut(s)	80, 328
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	3 cut(s)	22, 168, 350
MhlI	GDGCHC	1 cut(s)	206
MluCI	AATT	6 cut(s)	13, 46, 213, 219, 251, 397
MnlI	CCTC	4 cut(s)	21, 33, 99, 108
MseI	TTAA	3 cut(s)	132, 218, 396
MspI	CCGG	1 cut(s)	25
MspR9I	CCNGG	1 cut(s)	25
NciI	CCSGG	1 cut(s)	25
NdeII	GATC	1 cut(s)	3
NlaIV	GGNNCC	1 cut(s)	278
NmuCI	GTSAC	1 cut(s)	328
PcsI	WCGNNNNNNNCGW	1 cut(s)	253
PfeI	GAWTC	1 cut(s)	335
PfoI	TCCNGGA	1 cut(s)	23
PkrI	GCNGC	1 cut(s)	309
Ppu21I	YACGTR	1 cut(s)	265
PpuMI	RGGWCCY	1 cut(s)	277
Psp5II	RGGWCCY	1 cut(s)	277
PspN4I	GGNNCC	1 cut(s)	278
PspPI	GGNCC	1 cut(s)	277
PspPPI	RGGWCCY	1 cut(s)	277
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
SaqAI	TTAA	3 cut(s)	132, 218, 396
SatI	GCNGC	1 cut(s)	308
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	1 cut(s)	277
ScrFI	CCNGG	1 cut(s)	25
SduI	GDGCHC	1 cut(s)	206
SetI	ASST	9 cut(s)	32, 38, 44, 110, 193, 267, 272, 288, 350
SfcI	CTRYAG	1 cut(s)	340
SinI	GGWCC	1 cut(s)	277
SnaBI	TACGTA	1 cut(s)	265
Sse9I	AATT	6 cut(s)	13, 46, 213, 219, 251, 397
SspMI	CTAG	3 cut(s)	78, 141, 234
StyD4I	CCNGG	1 cut(s)	23
TaaI	ACNGT	1 cut(s)	381
TaiI	ACGT	2 cut(s)	267, 288
TasI	AATT	6 cut(s)	13, 46, 213, 219, 251, 397
TfiI	GAWTC	1 cut(s)	335
Tru1I	TTAA	3 cut(s)	132, 218, 396
Tru9I	TTAA	3 cut(s)	132, 218, 396
TscAI	CASTG	1 cut(s)	94
TseFI	GTSAC	1 cut(s)	328
TseI	GCWGC	1 cut(s)	307
Tsp45I	GTSAC	1 cut(s)	328
TspRI	CASTG	1 cut(s)	94
VpaK11BI	GGWCC	1 cut(s)	277
XagI	CCTNNNNNAGG	1 cut(s)	343
XapI	RAATTY	2 cut(s)	13, 251
XbaI	TCTAGA	1 cut(s)	140
XspI	CTAG	3 cut(s)	78, 141, 234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.