Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0020543

Physical Location & Seq

Genomic Coordinates Forward (+)

10731986 .. 10735170

Gene Structure 3185 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29589

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGGTTTTAAGCCAATAGATTGGTACCGTCAGCCAGTAGCTAATGGGGTATGGGCCAAAGCAGCGAGTGCTTTTGGCTCATACACACCTTGTGCAATGGACTCTATGGTCATCTGCATTTCTCATTTAGTTCTTTTCAGCCTGTGCTGCTATCGTATATGGATGATCAAGAAGAATTTGAAAGCCTGGAGGTTCAGGTTGAGGTCAAATTACTATAACTGCTTGTTGGGTTTGTTGGCGGGTTACTCCACAGCTGAGCCTATACTGAGGTTGGTGATTGGTCTATCACTTTTTAACAAGTATGGCTTTGCTCCTTTCGAGATCACTTCTTTGATCATTGAAGCTCTTGCTTGGTGCTCTATGATAATTTTGATTGGCTTGGAAACTAAGATATACATTCGGGAGTTCCGATGGTACGTAAGATTCCTACAGAGGGTGTTGTTTGGAGTTCTACTTCTCTTCTATGTTCCCATTTTGGATCCTTATCCTGGCTATGTTGTTCTGCAATCTGAGTCACTTGACAATGCTGAATATGAAGCACTACCAGGAGAAGTTGAAACTTGCCCTGAACGGCATGTTAATATATTTTCCAGTGAGAGTTATGAGTTGAATGCAAATGCATTTGTGTTACTTTTCTCTTTTGTCTGGTACAGAAAACCCATTACTGAAACAGATGTTTGGAAGTTGGACACATGGGATCAGACTGAGAGATTGATTAAAAGGTCCAATTTTGCTTCCTTTTCAGTTGTTAATTCATTATTTTATTCTCACCTGCACCACAGGCGTAATCATTTTTCAATTTTCAGGTTTCAGGAATGTTGGGTTGAAGAATCTCAGAGGTCCAAGCCATGGCTTCTGAGAGCACTGAATTGTAGCCTTGGACGAAGGTTCTGGTTGGCAGGCTTTTTCAAGTCAATGCAACGAGATGATCCAGCTTGGATTGGTTATATATATGCCTTCTTAATTTTCATTGGTGTGTCATTTGGTGTGCTCCCTGAAGCTCACTATTACCAGAATATTTTCCGGGCCGGCTTTCGGTTGAGATCAACTTTGGTAAATTTCTGCATTAACAAGAAAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

360

Amino Acids

42.34

Weight (kDa)

9.14

Isoelectric Point (pI)

45.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020543)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0015431 RchiOBHm_Chr5g0015471 RchiOBHm_Chr5g0067651
rosa_multiflora	Rmu_co8264059.1_g000001
rosa_rugosa	Rorug05G0027600
rosa_wichuraiana	Rw5G045960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	780
AasI	GACNNNNNNGTC	1 cut(s)	107
Acc36I	ACCTGC	1 cut(s)	780
Acc65I	GGTACC	1 cut(s)	24
AccB1I	GGYRCC	1 cut(s)	24
AccB7I	CCANNNNNTGG	1 cut(s)	849
AciI	CCGC	1 cut(s)	239
AclWI	GGATC	4 cut(s)	473, 486, 705, 923
AcsI	RAATTY	2 cut(s)	175, 1057
AcuI	CTGAAG	1 cut(s)	1017
AdeI	CACNNNGTG	1 cut(s)	92
AfaI	GTAC	3 cut(s)	26, 416, 650
AfiI	CCNNNNNNNGG	4 cut(s)	433, 488, 849, 1035
AgsI	TTSAA	7 cut(s)	181, 341, 557, 610, 798, 827, 910
AjnI	CCWGG	3 cut(s)	185, 487, 544
AluBI	AGCT	5 cut(s)	41, 254, 344, 935, 1001
AluI	AGCT	5 cut(s)	41, 254, 344, 935, 1001
Alw21I	GWGCWC	3 cut(s)	359, 865, 993
AlwI	GGATC	4 cut(s)	473, 486, 705, 923
AoxI	GGCC	2 cut(s)	54, 1026
ApeKI	GCWGC	2 cut(s)	62, 147
ApoI	RAATTY	2 cut(s)	175, 1057
Asp700I	GAANNNNTTC	1 cut(s)	1019
Asp718I	GGTACC	1 cut(s)	24
AspS9I	GGNCC	4 cut(s)	54, 723, 840, 1026
AsuC2I	CCSGG	1 cut(s)	1025
AsuHPI	GGTGA	2 cut(s)	286, 761
AvaII	GGWCC	2 cut(s)	723, 840
BamHI	GGATCC	1 cut(s)	478
BanI	GGYRCC	1 cut(s)	24
Bbv12I	GWGCWC	3 cut(s)	359, 865, 993
BbvI	GCAGC	2 cut(s)	74, 134
BccI	CCATC	1 cut(s)	405
BceAI	ACGGC	1 cut(s)	587
BciT130I	CCWGG	3 cut(s)	187, 489, 546
BclI	TGATCA	2 cut(s)	165, 333
BcnI	CCSGG	1 cut(s)	1025
BfmI	CTRYAG	1 cut(s)	428
BfuAI	ACCTGC	1 cut(s)	780
BisI	GCNGC	2 cut(s)	63, 148
BlpI	GCTNAGC	1 cut(s)	255
BlsI	GCNGC	2 cut(s)	64, 149
Bme1390I	CCNGG	4 cut(s)	187, 489, 546, 1025
Bme18I	GGWCC	2 cut(s)	723, 840
BmgT120I	GGNCC	4 cut(s)	54, 723, 840, 1026
BmiI	GGNNCC	2 cut(s)	26, 480
BmrFI	CCNGG	4 cut(s)	187, 489, 546, 1025
BpmI	CTGGAG	1 cut(s)	208
Bpu1102I	GCTNAGC	1 cut(s)	255
BpuMI	CCSGG	1 cut(s)	1025
BsaAI	YACGTR	1 cut(s)	418
BsaBI	GATNNNNATC	1 cut(s)	483
BsaJI	CCNNGG	2 cut(s)	848, 877
Bsc4I	CCNNNNNNNGG	4 cut(s)	433, 488, 849, 1035
Bse118I	RCCGGY	1 cut(s)	1028
Bse1I	ACTGG	2 cut(s)	35, 591
Bse3DI	GCAATG	1 cut(s)	102
Bse8I	GATNNNNATC	1 cut(s)	483
BseBI	CCWGG	3 cut(s)	187, 489, 546
BseDI	CCNNGG	2 cut(s)	848, 877
BseGI	GGATG	1 cut(s)	168
BseJI	GATNNNNATC	1 cut(s)	483
BseLI	CCNNNNNNNGG	4 cut(s)	433, 488, 849, 1035
BseMI	GCAATG	1 cut(s)	102
BseMII	CTCAG	6 cut(s)	246, 257, 501, 696, 848, 848
BseNI	ACTGG	2 cut(s)	35, 591
BseXI	GCAGC	2 cut(s)	74, 134
BsgI	GTGCAG	1 cut(s)	758
BshFI	GGCC	2 cut(s)	56, 1028
BshNI	GGYRCC	1 cut(s)	24
BsiHKAI	GWGCWC	3 cut(s)	359, 865, 993
BsiSI	CCGG	2 cut(s)	1024, 1029
BslI	CCNNNNNNNGG	4 cut(s)	433, 488, 849, 1035
BsmI	GAATGC	1 cut(s)	616
BsnI	GGCC	2 cut(s)	56, 1028
Bsp1286I	GDGCHC	3 cut(s)	359, 865, 993
Bsp143I	GATC	7 cut(s)	165, 321, 333, 478, 697, 928, 1043
Bsp1720I	GCTNAGC	1 cut(s)	255
Bsp19I	CCATGG	1 cut(s)	848
BspACI	CCGC	1 cut(s)	239
BspANI	GGCC	2 cut(s)	56, 1028
BspCNI	CTCAG	6 cut(s)	247, 258, 502, 697, 847, 849
BspLI	GGNNCC	2 cut(s)	26, 480
BspMI	ACCTGC	1 cut(s)	780
BspPI	GGATC	4 cut(s)	473, 486, 705, 923
BspT107I	GGYRCC	1 cut(s)	24
BsrDI	GCAATG	1 cut(s)	102
BsrFI	RCCGGY	1 cut(s)	1028
BsrI	ACTGG	2 cut(s)	35, 591
BssAI	RCCGGY	1 cut(s)	1028
BssECI	CCNNGG	2 cut(s)	848, 877
BssMI	GATC	7 cut(s)	165, 321, 333, 478, 697, 928, 1043
BssT1I	CCWWGG	2 cut(s)	848, 877
Bst2UI	CCWGG	3 cut(s)	187, 489, 546
Bst4CI	ACNGT	1 cut(s)	29
Bst6I	CTCTTC	1 cut(s)	464
BstAPI	GCANNNNNTGC	1 cut(s)	68
BstBAI	YACGTR	1 cut(s)	418
BstC8I	GCNNGC	2 cut(s)	901, 1030
BstDEI	CTNAG	7 cut(s)	255, 266, 387, 510, 705, 834, 857
BstDSI	CCRYGG	1 cut(s)	848
BstF5I	GGATG	1 cut(s)	168
BstKTI	GATC	7 cut(s)	168, 324, 336, 481, 700, 931, 1046
BstMBI	GATC	7 cut(s)	165, 321, 333, 478, 697, 928, 1043
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 68, 147, 781
BstNI	CCWGG	3 cut(s)	187, 489, 546
BstNSI	RCATGY	1 cut(s)	578
BstSCI	CCNGG	4 cut(s)	185, 487, 544, 1023
BstSFI	CTRYAG	1 cut(s)	428
BstSNI	TACGTA	1 cut(s)	418
BstV1I	GCAGC	2 cut(s)	74, 134
BstX2I	RGATCY	1 cut(s)	478
BstXI	CCANNNNNNTGG	1 cut(s)	21
BstYI	RGATCY	1 cut(s)	478
BsuRI	GGCC	2 cut(s)	56, 1028
BtgI	CCRYGG	1 cut(s)	848
BtsCI	GGATG	1 cut(s)	168
BtsIMutI	CAGTG	2 cut(s)	598, 863
BveI	ACCTGC	1 cut(s)	780
Cac8I	GCNNGC	2 cut(s)	901, 1030
Cfr10I	RCCGGY	1 cut(s)	1028
Cfr13I	GGNCC	4 cut(s)	54, 723, 840, 1026
Csp6I	GTAC	3 cut(s)	25, 415, 649
CviAII	CATG	3 cut(s)	575, 693, 849
CviQI	GTAC	3 cut(s)	25, 415, 649
DdeI	CTNAG	7 cut(s)	255, 266, 387, 510, 705, 834, 857
DpnI	GATC	7 cut(s)	167, 323, 335, 480, 699, 930, 1045
DpnII	GATC	7 cut(s)	165, 321, 333, 478, 697, 928, 1043
DraIII	CACNNNGTG	1 cut(s)	92
DrdI	GACNNNNNNGTC	1 cut(s)	107
DseDI	GACNNNNNNGTC	1 cut(s)	107
Eam1104I	CTCTTC	1 cut(s)	464
EarI	CTCTTC	1 cut(s)	464
Eco105I	TACGTA	1 cut(s)	418
Eco130I	CCWWGG	2 cut(s)	848, 877
Eco47I	GGWCC	2 cut(s)	723, 840
Eco57I	CTGAAG	1 cut(s)	1017
EcoRII	CCWGG	3 cut(s)	185, 487, 544
EcoT14I	CCWWGG	2 cut(s)	848, 877
EcoT22I	ATGCAT	1 cut(s)	622
ErhI	CCWWGG	2 cut(s)	848, 877
FaeI	CATG	3 cut(s)	578, 696, 852
FalI	AAGNNNNNCTT	2 cut(s)	290, 322
FatI	CATG	3 cut(s)	574, 692, 848
FauI	CCCGC	1 cut(s)	232
FbaI	TGATCA	2 cut(s)	165, 333
Fnu4HI	GCNGC	2 cut(s)	63, 148
FokI	GGATG	1 cut(s)	175
Fsp4HI	GCNGC	2 cut(s)	63, 148
GluI	GCNGC	2 cut(s)	63, 148
GsuI	CTGGAG	1 cut(s)	208
HaeIII	GGCC	2 cut(s)	56, 1028
HapII	CCGG	2 cut(s)	1024, 1029
Hin1II	CATG	3 cut(s)	578, 696, 852
HinfI	GANTC	4 cut(s)	101, 423, 512, 830
HpaII	CCGG	2 cut(s)	1024, 1029
HphI	GGTGA	2 cut(s)	286, 761
Hpy188I	TCNGA	5 cut(s)	410, 511, 702, 837, 858
Hpy188III	TCNNGA	4 cut(s)	169, 319, 401, 812
HpyAV	CCTTC	2 cut(s)	879, 967
HpyCH4III	ACNGT	1 cut(s)	29
HpyCH4IV	ACGT	1 cut(s)	417
HpyCH4V	TGCA	8 cut(s)	95, 117, 505, 614, 620, 775, 919, 1065
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 68, 147, 781
HpyF3I	CTNAG	7 cut(s)	255, 266, 387, 510, 705, 834, 857
HpySE526I	ACGT	1 cut(s)	417
Hsp92II	CATG	3 cut(s)	578, 696, 852
KpnI	GGTACC	1 cut(s)	28
KroI	GCCGGC	1 cut(s)	1028
KroNI	GCCGGC	1 cut(s)	1030
Ksp22I	TGATCA	2 cut(s)	165, 333
Kzo9I	GATC	7 cut(s)	165, 321, 333, 478, 697, 928, 1043
LmnI	GCTCC	2 cut(s)	316, 996
Lsp1109I	GCAGC	2 cut(s)	74, 134
MaeII	ACGT	1 cut(s)	417
MaeIII	GTNAC	3 cut(s)	242, 513, 627
MalI	GATC	7 cut(s)	167, 323, 335, 480, 699, 930, 1045
MboI	GATC	7 cut(s)	165, 321, 333, 478, 697, 928, 1043
MboII	GAAGA	3 cut(s)	184, 451, 839
MflI	RGATCY	1 cut(s)	478
MhlI	GDGCHC	3 cut(s)	359, 865, 993
MluCI	AATT	9 cut(s)	175, 208, 366, 727, 751, 798, 868, 963, 1057
MlyI	GAGTC	2 cut(s)	95, 521
MmeI	TCCRAC	1 cut(s)	666
MnlI	CCTC	5 cut(s)	183, 195, 261, 426, 831
Mph1103I	ATGCAT	1 cut(s)	622
MroNI	GCCGGC	1 cut(s)	1028
MroXI	GAANNNNTTC	1 cut(s)	1019
MseI	TTAA	7 cut(s)	9, 294, 579, 717, 750, 962, 1068
MslI	CAYNNNNRTG	1 cut(s)	974
MspA1I	CMGCKG	1 cut(s)	254
MspI	CCGG	2 cut(s)	1024, 1029
MspR9I	CCNGG	4 cut(s)	187, 489, 546, 1025
Mva1269I	GAATGC	1 cut(s)	616
MvaI	CCWGG	3 cut(s)	187, 489, 546
MwoI	GCNNNNNNNGC	4 cut(s)	62, 68, 147, 781
NaeI	GCCGGC	1 cut(s)	1030
NciI	CCSGG	1 cut(s)	1025
NcoI	CCATGG	1 cut(s)	848
NdeII	GATC	7 cut(s)	165, 321, 333, 478, 697, 928, 1043
NgoMIV	GCCGGC	1 cut(s)	1028
NlaIII	CATG	3 cut(s)	578, 696, 852
NlaIV	GGNNCC	2 cut(s)	26, 480
NmuCI	GTSAC	1 cut(s)	513
NsiI	ATGCAT	1 cut(s)	622
NspI	RCATGY	1 cut(s)	578
PaqCI	CACCTGC	1 cut(s)	780
PcsI	WCGNNNNNNNCGW	1 cut(s)	406
PctI	GAATGC	1 cut(s)	616
PdiI	GCCGGC	1 cut(s)	1030
PdmI	GAANNNNTTC	1 cut(s)	1019
PfeI	GAWTC	2 cut(s)	423, 830
PflMI	CCANNNNNTGG	1 cut(s)	849
PkrI	GCNGC	2 cut(s)	64, 149
PleI	GAGTC	2 cut(s)	95, 520
PpsI	GAGTC	2 cut(s)	95, 520
Ppu21I	YACGTR	1 cut(s)	418
Psp6I	CCWGG	3 cut(s)	185, 487, 544
PspGI	CCWGG	3 cut(s)	185, 487, 544
PspN4I	GGNNCC	2 cut(s)	26, 480
PspPI	GGNCC	4 cut(s)	54, 723, 840, 1026
PsuI	RGATCY	1 cut(s)	478
PvuII	CAGCTG	1 cut(s)	254
RsaI	GTAC	3 cut(s)	26, 416, 650
RsaNI	GTAC	3 cut(s)	25, 415, 649
RseI	CAYNNNNRTG	1 cut(s)	974
SaqAI	TTAA	7 cut(s)	9, 294, 579, 717, 750, 962, 1068
SatI	GCNGC	2 cut(s)	63, 148
Sau3AI	GATC	7 cut(s)	165, 321, 333, 478, 697, 928, 1043
Sau96I	GGNCC	4 cut(s)	54, 723, 840, 1026
SchI	GAGTC	2 cut(s)	95, 521
ScrFI	CCNGG	4 cut(s)	187, 489, 546, 1025
SduI	GDGCHC	3 cut(s)	359, 865, 993
SfcI	CTRYAG	1 cut(s)	428
SinI	GGWCC	2 cut(s)	723, 840
SmiMI	CAYNNNNRTG	1 cut(s)	974
SnaBI	TACGTA	1 cut(s)	418
Sse9I	AATT	9 cut(s)	175, 208, 366, 727, 751, 798, 868, 963, 1057
SsiI	CCGC	1 cut(s)	239
SspI	AATATT	1 cut(s)	1018
StyD4I	CCNGG	4 cut(s)	185, 487, 544, 1023
StyI	CCWWGG	2 cut(s)	848, 877
TaaI	ACNGT	1 cut(s)	29
TaiI	ACGT	1 cut(s)	420
TaqI	TCGA	1 cut(s)	318
TasI	AATT	9 cut(s)	175, 208, 366, 727, 751, 798, 868, 963, 1057
TfiI	GAWTC	2 cut(s)	423, 830
Tru1I	TTAA	7 cut(s)	9, 294, 579, 717, 750, 962, 1068
Tru9I	TTAA	7 cut(s)	9, 294, 579, 717, 750, 962, 1068
TscAI	CASTG	2 cut(s)	598, 870
TseFI	GTSAC	1 cut(s)	513
TseI	GCWGC	2 cut(s)	62, 147
Tsp45I	GTSAC	1 cut(s)	513
TspDTI	ATGAA	3 cut(s)	549, 744, 958
TspRI	CASTG	2 cut(s)	598, 870
Van91I	CCANNNNNTGG	1 cut(s)	849
VpaK11BI	GGWCC	2 cut(s)	723, 840
XapI	RAATTY	2 cut(s)	175, 1057
XceI	RCATGY	1 cut(s)	578
XmnI	GAANNNNTTC	1 cut(s)	1019
Zsp2I	ATGCAT	1 cut(s)	622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.