Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0020543

Physical Location & Seq

Genomic Coordinates Forward (+)

10669537 .. 10670394

Gene Structure 858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29585

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGGTTTTAAGCCAATAGACTGGTATTGTCAACCAGAAGCTAATGGGGTATGGGCCAAAGCAGTCAGTGCTTTTGGCTCATACACTCCTTGTGCAATGGACTCTATGGTCATCTGCATTTCTCATTTAGTCCTTTTTGGATTGTGCTGCTATCGAATATGGATGATCAAGAAGAATTTGAAATCCCGGAGGTTTAGGTTGAGGTCAAATTACTATAACTACTTGTTGGGTTTGTTGGCTGGTTACTCCACTGCTGAGCCTCTACTGAGGTTGGTGATGGGTTTATCACTTTTTAACCCGTTTGGAAAAACTGGCTTTGCTCCTTTTGAGGTGAGTTTTTTTTGGATAGAACATTTGCTTTTCACATGTCTTAATGATATCTGTCTTTCAAGTGAAAGCATGCACATACAAAATAGTATGTGGTTAATTAAACAGAAGGGAGTTGTGAATAGCTCATTTAAAAGTTTTACATTGTCGAAAGCTAGTAAAAACTTGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

166

Amino Acids

18.97

Weight (kDa)

9.34

Isoelectric Point (pI)

36.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020543)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0015431 RchiOBHm_Chr5g0015471 RchiOBHm_Chr5g0067651
rosa_multiflora	Rmu_co8264059.1_g000001
rosa_rugosa	Rorug05G0027600
rosa_wichuraiana	Rw5G045960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	107
AcsI	RAATTY	1 cut(s)	175
AflIII	ACRYGT	1 cut(s)	365
AgsI	TTSAA	2 cut(s)	181, 390
AluBI	AGCT	3 cut(s)	41, 453, 482
AluI	AGCT	3 cut(s)	41, 453, 482
AoxI	GGCC	1 cut(s)	54
ApeKI	GCWGC	1 cut(s)	147
ApoI	RAATTY	1 cut(s)	175
AspS9I	GGNCC	1 cut(s)	54
AsuC2I	CCSGG	1 cut(s)	187
AsuHPI	GGTGA	2 cut(s)	286, 343
BbvI	GCAGC	1 cut(s)	134
BccI	CCATC	1 cut(s)	271
BclI	TGATCA	1 cut(s)	165
BcnI	CCSGG	1 cut(s)	187
BfaI	CTAG	1 cut(s)	483
BisI	GCNGC	1 cut(s)	148
BlpI	GCTNAGC	1 cut(s)	255
BlsI	GCNGC	1 cut(s)	149
Bme1390I	CCNGG	1 cut(s)	187
BmgT120I	GGNCC	1 cut(s)	54
BmrFI	CCNGG	1 cut(s)	187
Bpu1102I	GCTNAGC	1 cut(s)	255
BpuMI	CCSGG	1 cut(s)	187
Bse1I	ACTGG	2 cut(s)	26, 316
Bse3DI	GCAATG	1 cut(s)	102
BseGI	GGATG	1 cut(s)	168
BseMI	GCAATG	1 cut(s)	102
BseMII	CTCAG	2 cut(s)	246, 257
BseNI	ACTGG	2 cut(s)	26, 316
BseXI	GCAGC	1 cut(s)	134
BshFI	GGCC	1 cut(s)	56
BsiSI	CCGG	1 cut(s)	187
BsnI	GGCC	1 cut(s)	56
Bsp143I	GATC	2 cut(s)	165, 495
Bsp1720I	GCTNAGC	1 cut(s)	255
BspANI	GGCC	1 cut(s)	56
BspCNI	CTCAG	2 cut(s)	247, 258
BsrDI	GCAATG	1 cut(s)	102
BsrI	ACTGG	2 cut(s)	26, 316
BssMI	GATC	2 cut(s)	165, 495
BstAPI	GCANNNNNTGC	1 cut(s)	68
BstC8I	GCNNGC	1 cut(s)	401
BstDEI	CTNAG	2 cut(s)	255, 266
BstF5I	GGATG	1 cut(s)	168
BstKTI	GATC	2 cut(s)	168, 498
BstMBI	GATC	2 cut(s)	165, 495
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstNSI	RCATGY	2 cut(s)	369, 403
BstSCI	CCNGG	1 cut(s)	185
BstV1I	GCAGC	1 cut(s)	134
BstXI	CCANNNNNNTGG	1 cut(s)	21
BsuRI	GGCC	1 cut(s)	56
BtsCI	GGATG	1 cut(s)	168
BtsI	GCAGTG	1 cut(s)	249
BtsIMutI	CAGTG	2 cut(s)	73, 249
Cac8I	GCNNGC	1 cut(s)	401
Cfr13I	GGNCC	1 cut(s)	54
CviAII	CATG	2 cut(s)	366, 400
CviJI	RGCY	9 cut(s)	13, 41, 56, 78, 239, 259, 315, 453, 482
CviKI_1	RGCY	9 cut(s)	13, 41, 56, 78, 239, 259, 315, 453, 482
DdeI	CTNAG	2 cut(s)	255, 266
DpnI	GATC	2 cut(s)	167, 497
DpnII	GATC	2 cut(s)	165, 495
DraI	TTTAAA	1 cut(s)	460
DrdI	GACNNNNNNGTC	1 cut(s)	107
DseDI	GACNNNNNNGTC	1 cut(s)	107
Eco32I	GATATC	1 cut(s)	379
EcoRV	GATATC	1 cut(s)	379
FaeI	CATG	2 cut(s)	369, 403
FaiI	YATR	9 cut(s)	52, 82, 107, 160, 216, 367, 401, 407, 419
FatI	CATG	2 cut(s)	365, 399
FbaI	TGATCA	1 cut(s)	165
Fnu4HI	GCNGC	1 cut(s)	148
FokI	GGATG	1 cut(s)	175
Fsp4HI	GCNGC	1 cut(s)	148
FspBI	CTAG	1 cut(s)	483
GluI	GCNGC	1 cut(s)	148
HaeIII	GGCC	1 cut(s)	56
HapII	CCGG	1 cut(s)	187
Hin1II	CATG	2 cut(s)	369, 403
HincII	GTYRAC	1 cut(s)	32
HindII	GTYRAC	1 cut(s)	32
HinfI	GANTC	1 cut(s)	101
HpaII	CCGG	1 cut(s)	187
HphI	GGTGA	2 cut(s)	286, 343
Hpy166II	GTNNAC	1 cut(s)	32
Hpy188I	TCNGA	1 cut(s)	500
Hpy188III	TCNNGA	1 cut(s)	169
Hpy8I	GTNNAC	1 cut(s)	32
HpyAV	CCTTC	1 cut(s)	430
HpyCH4V	TGCA	3 cut(s)	95, 117, 403
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HpyF3I	CTNAG	2 cut(s)	255, 266
Hsp92II	CATG	2 cut(s)	369, 403
Ksp22I	TGATCA	1 cut(s)	165
Kzo9I	GATC	2 cut(s)	165, 495
LmnI	GCTCC	1 cut(s)	325
LpnPI	CCDG	5 cut(s)	7, 48, 200, 225, 297
Lsp1109I	GCAGC	1 cut(s)	134
MaeI	CTAG	1 cut(s)	483
MaeIII	GTNAC	1 cut(s)	242
MalI	GATC	2 cut(s)	167, 497
MboI	GATC	2 cut(s)	165, 495
MboII	GAAGA	1 cut(s)	184
MluCI	AATT	3 cut(s)	175, 208, 426
MlyI	GAGTC	1 cut(s)	95
MnlI	CCTC	5 cut(s)	183, 195, 261, 270, 322
MseI	TTAA	6 cut(s)	9, 294, 372, 425, 429, 459
MspI	CCGG	1 cut(s)	187
MspR9I	CCNGG	1 cut(s)	187
MwoI	GCNNNNNNNGC	1 cut(s)	68
NciI	CCSGG	1 cut(s)	187
NdeII	GATC	2 cut(s)	165, 495
NlaIII	CATG	2 cut(s)	369, 403
NspI	RCATGY	2 cut(s)	369, 403
PacI	TTAATTAA	1 cut(s)	429
PaeI	GCATGC	1 cut(s)	403
PciI	ACATGT	1 cut(s)	365
PfoI	TCCNGGA	1 cut(s)	185
PkrI	GCNGC	1 cut(s)	149
PleI	GAGTC	1 cut(s)	95
PpsI	GAGTC	1 cut(s)	95
PscI	ACATGT	1 cut(s)	365
PspPI	GGNCC	1 cut(s)	54
SaqAI	TTAA	6 cut(s)	9, 294, 372, 425, 429, 459
SatI	GCNGC	1 cut(s)	148
Sau3AI	GATC	2 cut(s)	165, 495
Sau96I	GGNCC	1 cut(s)	54
SchI	GAGTC	1 cut(s)	95
ScrFI	CCNGG	1 cut(s)	187
SetI	ASST	8 cut(s)	43, 194, 200, 206, 272, 333, 455, 484
SphI	GCATGC	1 cut(s)	403
Sse9I	AATT	3 cut(s)	175, 208, 426
SspMI	CTAG	1 cut(s)	483
StyD4I	CCNGG	1 cut(s)	185
TaqI	TCGA	2 cut(s)	154, 476
TasI	AATT	3 cut(s)	175, 208, 426
Tru1I	TTAA	6 cut(s)	9, 294, 372, 425, 429, 459
Tru9I	TTAA	6 cut(s)	9, 294, 372, 425, 429, 459
TscAI	CASTG	2 cut(s)	73, 256
TseI	GCWGC	1 cut(s)	147
TspRI	CASTG	2 cut(s)	73, 256
XapI	RAATTY	1 cut(s)	175
XceI	RCATGY	2 cut(s)	369, 403
XspI	CTAG	1 cut(s)	483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.