Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0020543

Physical Location & Seq

Genomic Coordinates Reverse (-)

80016361 .. 80021103

Gene Structure 4743 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G045960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGGTTTAAAGCCAGTAGACTATGCTTTTGGCTCATTCACTCCTTGTGCAATGGACTCTATGGTCATCTGCATTTCTCATTTAGTTCTTTTCGGTTTGTGCTGCTATCGAATATGGATGATCAAGAAGAATTTGAAATCCCGGAGGTTTAGGTTGAGGTCAAATTACTATAACTACTTGTTGGGATTGTTGGCTGGTTACTCCACTGCTGAGCCTCTACTGAGGTTGGTGATGGGTTTATCACTTTTTAGCCCGTCTGGAAAAACTGGCTTTGCTCCTTTTGAGATGACTTCTTCAATCATTGAAGCTCTTTCTTGGTGCTCTATGCTAATTTTAATTGGCTTGGAAACTAGGATTTACATTCGGGAATTCCGATGGTACGTAAGGTTTGGGGTCCTTTACGTCTTGGTAGGAGATGTTGTGCTGCTAAATCTTATTCTTGGAGTGACAGATTCCTACAGCAGATATTTGTTGTCTCACGTCCTAACAGCCTACGTCTTAGAAATAGTAGTTAACAAATTCACCAAAATGTTATGCATACAAGCTGGAGCTGCAGGAATAATTGTATCCAATCATGGAGCTCGGCAACTAGATTATGTCCCTGCAACTATTATGGCTTTGGAAGAGGTACATATACGAACTGATGTCTACACGAATACTAGACATTGGCTAAAAACCGATGTTTGCATTTTCCGGATCTTTCTCATCACCCACAAAGACATCGGTCGGGTTTTTGTTTCTCATTGGTTTTTGGCCGATGATATTTGTCCATATCAATTGCCAGACTGTTGGATGCACAATCGTTTGAAAACAAAAACAAAATACTATAATAGTGGAATGTGGAATAAATTTGAAATGAAAAAATGGCTCTTCCCTTCCTTTACGGAGAAACATTTATTACAAGTCACAATATACGAGCCATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

308

Amino Acids

35.72

Weight (kDa)

9.19

Isoelectric Point (pI)

40.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMN_dh	PF01070	177 - 211	1e-10	FMN-dependent dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020543)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0015431 RchiOBHm_Chr5g0015471 RchiOBHm_Chr5g0067651
rosa_multiflora	Rmu_co8264059.1_g000001
rosa_rugosa	Rorug05G0027600
rosa_wichuraiana	Rw5G045960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	62
AccI	GTMKAC	2 cut(s)	18, 648
AccIII	TCCGGA	1 cut(s)	693
AclWI	GGATC	1 cut(s)	704
AcoI	YGGCCR	1 cut(s)	753
AcsI	RAATTY	4 cut(s)	130, 368, 518, 848
AfaI	GTAC	2 cut(s)	380, 630
AgsI	TTSAA	5 cut(s)	136, 297, 305, 808, 854
AjiI	CACGTC	1 cut(s)	481
AluBI	AGCT	4 cut(s)	308, 545, 551, 581
AluI	AGCT	4 cut(s)	308, 545, 551, 581
Alw21I	GWGCWC	2 cut(s)	323, 583
Alw26I	GTCTC	1 cut(s)	480
AlwI	GGATC	1 cut(s)	704
Aor13HI	TCCGGA	1 cut(s)	693
AoxI	GGCC	1 cut(s)	753
ApeKI	GCWGC	3 cut(s)	102, 424, 551
ApoI	RAATTY	4 cut(s)	130, 368, 518, 848
ArsI	GACNNNNNNTTYG	2 cut(s)	11, 43
AspS9I	GGNCC	1 cut(s)	394
AsuC2I	CCSGG	1 cut(s)	142
AsuHPI	GGTGA	3 cut(s)	241, 514, 700
AvaII	GGWCC	1 cut(s)	394
BanII	GRGCYC	1 cut(s)	583
Bbv12I	GWGCWC	2 cut(s)	323, 583
BbvI	GCAGC	3 cut(s)	89, 411, 538
BccI	CCATC	2 cut(s)	226, 369
BciVI	GTATCC	1 cut(s)	577
BclI	TGATCA	1 cut(s)	120
BcnI	CCSGG	1 cut(s)	142
BcoDI	GTCTC	1 cut(s)	480
BfaI	CTAG	3 cut(s)	351, 590, 660
BfmI	CTRYAG	2 cut(s)	457, 552
BfuI	GTATCC	1 cut(s)	577
BisI	GCNGC	3 cut(s)	103, 425, 552
BlpI	GCTNAGC	1 cut(s)	210
BlsI	GCNGC	3 cut(s)	104, 426, 553
Bme1390I	CCNGG	1 cut(s)	142
Bme18I	GGWCC	1 cut(s)	394
BmgBI	CACGTC	1 cut(s)	481
BmgT120I	GGNCC	1 cut(s)	394
BmiI	GGNNCC	1 cut(s)	395
BmrFI	CCNGG	1 cut(s)	142
BmsI	GCATC	1 cut(s)	783
BoxI	GACNNNNGTC	1 cut(s)	723
BpmI	CTGGAG	1 cut(s)	567
Bpu1102I	GCTNAGC	1 cut(s)	210
BpuMI	CCSGG	1 cut(s)	142
BsaAI	YACGTR	1 cut(s)	382
BsaWI	WCCGGW	1 cut(s)	693
BsaXI	ACNNNNNCTCC	2 cut(s)	405, 435
Bse1I	ACTGG	2 cut(s)	14, 271
Bse3DI	GCAATG	1 cut(s)	57
BseAI	TCCGGA	1 cut(s)	693
BseGI	GGATG	2 cut(s)	123, 798
BseMI	GCAATG	1 cut(s)	57
BseMII	CTCAG	2 cut(s)	201, 212
BseNI	ACTGG	2 cut(s)	14, 271
BseXI	GCAGC	3 cut(s)	89, 411, 538
Bsh1285I	CGRYCG	1 cut(s)	727
BshFI	GGCC	1 cut(s)	755
BsiEI	CGRYCG	1 cut(s)	727
BsiHKAI	GWGCWC	2 cut(s)	323, 583
BsiSI	CCGG	2 cut(s)	142, 694
BslFI	GGGAC	1 cut(s)	584
BsmAI	GTCTC	1 cut(s)	480
BsmFI	GGGAC	1 cut(s)	584
BsnI	GGCC	1 cut(s)	755
Bsp1286I	GDGCHC	2 cut(s)	323, 583
Bsp13I	TCCGGA	1 cut(s)	693
Bsp143I	GATC	2 cut(s)	120, 696
Bsp1720I	GCTNAGC	1 cut(s)	210
BspANI	GGCC	1 cut(s)	755
BspCNI	CTCAG	2 cut(s)	202, 213
BspEI	TCCGGA	1 cut(s)	693
BspLI	GGNNCC	1 cut(s)	395
BspMAI	CTGCAG	1 cut(s)	556
BspPI	GGATC	1 cut(s)	704
BspQI	GCTCTTC	1 cut(s)	875
BsrDI	GCAATG	1 cut(s)	57
BsrI	ACTGG	2 cut(s)	14, 271
BssMI	GATC	2 cut(s)	120, 696
Bst4CI	ACNGT	1 cut(s)	788
Bst6I	CTCTTC	2 cut(s)	618, 875
BstBAI	YACGTR	1 cut(s)	382
BstDEI	CTNAG	3 cut(s)	210, 221, 499
BstF5I	GGATG	2 cut(s)	123, 798
BstKTI	GATC	2 cut(s)	123, 699
BstMAI	GTCTC	1 cut(s)	480
BstMBI	GATC	2 cut(s)	120, 696
BstMCI	CGRYCG	1 cut(s)	727
BstMWI	GCNNNNNNNGC	1 cut(s)	551
BstPAI	GACNNNNGTC	1 cut(s)	723
BstSCI	CCNGG	1 cut(s)	140
BstSFI	CTRYAG	2 cut(s)	457, 552
BstSNI	TACGTA	1 cut(s)	382
BstV1I	GCAGC	3 cut(s)	89, 411, 538
BstX2I	RGATCY	1 cut(s)	696
BstXI	CCANNNNNNTGG	1 cut(s)	789
BstYI	RGATCY	1 cut(s)	696
BsuI	GTATCC	1 cut(s)	577
BsuRI	GGCC	1 cut(s)	755
BtrI	CACGTC	1 cut(s)	481
BtsCI	GGATG	2 cut(s)	123, 798
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	1 cut(s)	204
Cfr13I	GGNCC	1 cut(s)	394
Csp6I	GTAC	2 cut(s)	379, 629
CviAII	CATG	1 cut(s)	575
CviQI	GTAC	2 cut(s)	379, 629
DdeI	CTNAG	3 cut(s)	210, 221, 499
DpnI	GATC	2 cut(s)	122, 698
DpnII	GATC	2 cut(s)	120, 696
DraI	TTTAAA	1 cut(s)	9
DrdI	GACNNNNNNGTC	1 cut(s)	62
DseDI	GACNNNNNNGTC	1 cut(s)	62
EaeI	YGGCCR	1 cut(s)	753
Eam1104I	CTCTTC	2 cut(s)	618, 875
EarI	CTCTTC	2 cut(s)	618, 875
Ecl136II	GAGCTC	1 cut(s)	581
Eco105I	TACGTA	1 cut(s)	382
Eco24I	GRGCYC	1 cut(s)	583
Eco47I	GGWCC	1 cut(s)	394
Eco53kI	GAGCTC	1 cut(s)	581
EcoICRI	GAGCTC	1 cut(s)	581
EcoO109I	RGGNCCY	1 cut(s)	394
EcoRI	GAATTC	1 cut(s)	368
EcoT22I	ATGCAT	1 cut(s)	539
EcoT38I	GRGCYC	1 cut(s)	583
FaeI	CATG	1 cut(s)	578
FaqI	GGGAC	1 cut(s)	584
FatI	CATG	1 cut(s)	574
FbaI	TGATCA	1 cut(s)	120
FblI	GTMKAC	2 cut(s)	18, 648
Fnu4HI	GCNGC	3 cut(s)	103, 425, 552
FokI	GGATG	2 cut(s)	130, 805
FriOI	GRGCYC	1 cut(s)	583
Fsp4HI	GCNGC	3 cut(s)	103, 425, 552
FspBI	CTAG	3 cut(s)	351, 590, 660
GluI	GCNGC	3 cut(s)	103, 425, 552
GsuI	CTGGAG	1 cut(s)	567
HaeIII	GGCC	1 cut(s)	755
HapII	CCGG	2 cut(s)	142, 694
Hin1II	CATG	1 cut(s)	578
HincII	GTYRAC	1 cut(s)	514
HindII	GTYRAC	1 cut(s)	514
HinfI	GANTC	2 cut(s)	56, 452
HpaI	GTTAAC	1 cut(s)	514
HpaII	CCGG	2 cut(s)	142, 694
HphI	GGTGA	3 cut(s)	241, 514, 700
Hpy166II	GTNNAC	3 cut(s)	19, 514, 649
Hpy188I	TCNGA	1 cut(s)	374
Hpy188III	TCNNGA	4 cut(s)	124, 258, 365, 694
Hpy8I	GTNNAC	3 cut(s)	19, 514, 649
HpyAV	CCTTC	1 cut(s)	885
HpyCH4III	ACNGT	1 cut(s)	788
HpyCH4IV	ACGT	4 cut(s)	381, 402, 480, 495
HpyCH4V	TGCA	7 cut(s)	50, 72, 537, 554, 605, 687, 796
HpyF10VI	GCNNNNNNNGC	1 cut(s)	551
HpyF3I	CTNAG	3 cut(s)	210, 221, 499
HpySE526I	ACGT	4 cut(s)	381, 402, 480, 495
Hsp92II	CATG	1 cut(s)	578
Kpn2I	TCCGGA	1 cut(s)	693
Ksp22I	TGATCA	1 cut(s)	120
KspAI	GTTAAC	1 cut(s)	514
Kzo9I	GATC	2 cut(s)	120, 696
LguI	GCTCTTC	1 cut(s)	875
LmnI	GCTCC	3 cut(s)	280, 548, 578
Lsp1109I	GCAGC	3 cut(s)	89, 411, 538
LweI	GCATC	1 cut(s)	783
MaeI	CTAG	3 cut(s)	351, 590, 660
MaeII	ACGT	4 cut(s)	381, 402, 480, 495
MaeIII	GTNAC	3 cut(s)	197, 445, 904
MalI	GATC	2 cut(s)	122, 698
MboI	GATC	2 cut(s)	120, 696
MboII	GAAGA	4 cut(s)	139, 285, 635, 862
MfeI	CAATTG	1 cut(s)	776
MflI	RGATCY	1 cut(s)	696
MhlI	GDGCHC	2 cut(s)	323, 583
MluCI	AATT	9 cut(s)	130, 163, 330, 336, 368, 518, 561, 776, 848
MlyI	GAGTC	1 cut(s)	50
MmeI	TCCRAC	1 cut(s)	770
MnlI	CCTC	5 cut(s)	138, 150, 216, 225, 619
Mph1103I	ATGCAT	1 cut(s)	539
MroI	TCCGGA	1 cut(s)	693
MseI	TTAA	4 cut(s)	8, 335, 513, 925
MslI	CAYNNNNRTG	1 cut(s)	527
MspI	CCGG	2 cut(s)	142, 694
MspR9I	CCNGG	1 cut(s)	142
MunI	CAATTG	1 cut(s)	776
MwoI	GCNNNNNNNGC	1 cut(s)	551
NciI	CCSGG	1 cut(s)	142
NdeII	GATC	2 cut(s)	120, 696
NlaIII	CATG	1 cut(s)	578
NlaIV	GGNNCC	1 cut(s)	395
NmeAIII	GCCGAG	1 cut(s)	562
NmuCI	GTSAC	2 cut(s)	445, 904
NsiI	ATGCAT	1 cut(s)	539
PciSI	GCTCTTC	1 cut(s)	875
PcsI	WCGNNNNNNNCGW	1 cut(s)	370
PfeI	GAWTC	1 cut(s)	452
PfoI	TCCNGGA	1 cut(s)	140
PkrI	GCNGC	3 cut(s)	104, 426, 553
PleI	GAGTC	1 cut(s)	50
PpsI	GAGTC	1 cut(s)	50
Ppu21I	YACGTR	1 cut(s)	382
PpuMI	RGGWCCY	1 cut(s)	394
PshAI	GACNNNNGTC	1 cut(s)	723
Psp124BI	GAGCTC	1 cut(s)	583
Psp5II	RGGWCCY	1 cut(s)	394
PspN4I	GGNNCC	1 cut(s)	395
PspPI	GGNCC	1 cut(s)	394
PspPPI	RGGWCCY	1 cut(s)	394
PstI	CTGCAG	1 cut(s)	556
PsuI	RGATCY	1 cut(s)	696
RsaI	GTAC	2 cut(s)	380, 630
RsaNI	GTAC	2 cut(s)	379, 629
RseI	CAYNNNNRTG	1 cut(s)	527
SacI	GAGCTC	1 cut(s)	583
SapI	GCTCTTC	1 cut(s)	875
SaqAI	TTAA	4 cut(s)	8, 335, 513, 925
SatI	GCNGC	3 cut(s)	103, 425, 552
Sau3AI	GATC	2 cut(s)	120, 696
Sau96I	GGNCC	1 cut(s)	394
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	1 cut(s)	142
SduI	GDGCHC	2 cut(s)	323, 583
SfaNI	GCATC	1 cut(s)	783
SfcI	CTRYAG	2 cut(s)	457, 552
SinI	GGWCC	1 cut(s)	394
SmiMI	CAYNNNNRTG	1 cut(s)	527
SnaBI	TACGTA	1 cut(s)	382
Sse9I	AATT	9 cut(s)	130, 163, 330, 336, 368, 518, 561, 776, 848
SspMI	CTAG	3 cut(s)	351, 590, 660
SstI	GAGCTC	1 cut(s)	583
StyD4I	CCNGG	1 cut(s)	140
TaaI	ACNGT	1 cut(s)	788
TaiI	ACGT	4 cut(s)	384, 405, 483, 498
TaqI	TCGA	1 cut(s)	109
TaqII	GACCGA	1 cut(s)	713
TasI	AATT	9 cut(s)	130, 163, 330, 336, 368, 518, 561, 776, 848
TfiI	GAWTC	1 cut(s)	452
Tru1I	TTAA	4 cut(s)	8, 335, 513, 925
Tru9I	TTAA	4 cut(s)	8, 335, 513, 925
TscAI	CASTG	1 cut(s)	211
TseFI	GTSAC	2 cut(s)	445, 904
TseI	GCWGC	3 cut(s)	102, 424, 551
Tsp45I	GTSAC	2 cut(s)	445, 904
TspDTI	ATGAA	1 cut(s)	872
TspGWI	ACGGA	1 cut(s)	899
TspRI	CASTG	1 cut(s)	211
VpaK11BI	GGWCC	1 cut(s)	394
XapI	RAATTY	4 cut(s)	130, 368, 518, 848
XmiI	GTMKAC	2 cut(s)	18, 648
XspI	CTAG	3 cut(s)	351, 590, 660
Zsp2I	ATGCAT	1 cut(s)	539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.