RchiOBHm_Chr5g0067811

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
73879194 .. 73880802
1609 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 174 bp
ATGAGAGTCAGGAAAGAGCTTGAAAAGGCAGAGCGGAGAGCCACCGCACAGTTAATGTTCGACTTGGGGCAGAAGGCTTATGGGAGGGGGATGTACGGTCGTGCCTTTGAGTTCCTAGAACGAGCACTGACAATCATTCCGAGGCCAACGTTATTTGGTGGTGAGGTAGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

57

Amino Acids

6.53

Weight (kDa)

10.14

Isoelectric Point (pI)

21.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021442)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0067811
rosa_multiflora Rmu_sc0000435.1_g000054
rosa_samantha Rh5CG484400 Rh5DG476600
rosa_wichuraiana Rw5G041570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 34
AciI CCGC 2 cut(s) 34, 45
AclI AACGTT 1 cut(s) 149
AfaI GTAC 1 cut(s) 95
AgsI TTSAA 1 cut(s) 23
AluBI AGCT 1 cut(s) 19
AluI AGCT 1 cut(s) 19
Alw21I GWGCWC 1 cut(s) 127
AoxI GGCC 1 cut(s) 143
AsuHPI GGTGA 1 cut(s) 173
Bbv12I GWGCWC 1 cut(s) 127
BfaI CTAG 1 cut(s) 116
BsaJI CCNNGG 1 cut(s) 140
BseDI CCNNGG 1 cut(s) 140
BseGI GGATG 1 cut(s) 96
Bsh1285I CGRYCG 1 cut(s) 100
BshFI GGCC 1 cut(s) 145
BsiEI CGRYCG 1 cut(s) 100
BsiHKAI GWGCWC 1 cut(s) 127
BsnI GGCC 1 cut(s) 145
Bsp1286I GDGCHC 1 cut(s) 127
BspACI CCGC 2 cut(s) 34, 45
BspANI GGCC 1 cut(s) 145
BsrBI CCGCTC 1 cut(s) 34
BssECI CCNNGG 1 cut(s) 140
Bst4CI ACNGT 2 cut(s) 51, 98
BstF5I GGATG 1 cut(s) 96
BstMCI CGRYCG 1 cut(s) 100
BsuRI GGCC 1 cut(s) 145
BtsCI GGATG 1 cut(s) 96
BtsIMutI CAGTG 1 cut(s) 125
Csp6I GTAC 1 cut(s) 94
CviJI RGCY 4 cut(s) 19, 41, 77, 145
CviKI_1 RGCY 4 cut(s) 19, 41, 77, 145
CviQI GTAC 1 cut(s) 94
FaiI YATR 1 cut(s) 81
FokI GGATG 1 cut(s) 103
FspBI CTAG 1 cut(s) 116
HaeIII GGCC 1 cut(s) 145
HinfI GANTC 1 cut(s) 6
HphI GGTGA 1 cut(s) 173
Hpy188I TCNGA 1 cut(s) 141
Hpy188III TCNNGA 1 cut(s) 10
HpyAV CCTTC 1 cut(s) 67
HpyCH4III ACNGT 2 cut(s) 51, 98
HpyCH4IV ACGT 1 cut(s) 149
HpySE526I ACGT 1 cut(s) 149
MaeI CTAG 1 cut(s) 116
MaeII ACGT 1 cut(s) 149
MbiI CCGCTC 1 cut(s) 34
MhlI GDGCHC 1 cut(s) 127
MlyI GAGTC 1 cut(s) 15
MnlI CCTC 3 cut(s) 78, 135, 157
MseI TTAA 2 cut(s) 53, 172
PleI GAGTC 1 cut(s) 14
PpsI GAGTC 1 cut(s) 14
Psp1406I AACGTT 1 cut(s) 149
RsaI GTAC 1 cut(s) 95
RsaNI GTAC 1 cut(s) 94
SaqAI TTAA 2 cut(s) 53, 172
SchI GAGTC 1 cut(s) 15
SduI GDGCHC 1 cut(s) 127
SetI ASST 4 cut(s) 21, 152, 168, 172
SgeI CNNG 7 cut(s) 22, 32, 76, 113, 128, 134, 153
SsiI CCGC 2 cut(s) 34, 45
SspMI CTAG 1 cut(s) 116
TaaI ACNGT 2 cut(s) 51, 98
TaiI ACGT 1 cut(s) 152
TaqI TCGA 1 cut(s) 60
Tru1I TTAA 2 cut(s) 53, 172
Tru9I TTAA 2 cut(s) 53, 172
TscAI CASTG 1 cut(s) 132
TspRI CASTG 1 cut(s) 132
XspI CTAG 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.