Rw5G041570

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0021442
Physical Location & Seq
Forward (+)
73110012 .. 73111147
1136 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G041570.1

Sequence Viewer

Length: 426 bp
ATGAGAGTCAGGAAAGAGCTTGAAAAGGCAGAGCGGAGAGCCACCGCACAGTTAATGTTCGACTTGGGACAGAAGGCTTATGGGAGGGGGATGTACGGTCGTGCCTTTGAGTTCCTAGAACGAGCACTGACAATCATTCCGAGGCCAACGTTATTTGGTGGTGAGATTCAAATTTGGCTTGCTATGGCCTACAAGGCTAATAAGCGCCATGTCGAATGCATTGATCTTTATAAGCAATTGGAGAACAAGCACCCAAGTGTCAGCTTCCCGTGCCAGGCTGCAGAGCTTCGCCACATTTTCCAAGCACCAAAGATCAAGATTACTCGAGAAGAGATGGTAACTATACCACTCATGAAGCCATTTTATGTTCAGCTAGACAAAAGTGATGCCACCATTAAGTTTGGCGATCTGTTCTTTATTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

16.52

Weight (kDa)

9.51

Isoelectric Point (pI)

40.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021442)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0067811
rosa_multiflora Rmu_sc0000435.1_g000054
rosa_samantha Rh5CG484400 Rh5DG476600
rosa_wichuraiana Rw5G041570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 231
AccBSI CCGCTC 1 cut(s) 34
AciI CCGC 2 cut(s) 34, 45
AclI AACGTT 1 cut(s) 149
AcsI RAATTY 1 cut(s) 171
AfaI GTAC 1 cut(s) 95
AfiI CCNNNNNNNGG 1 cut(s) 274
AgsI TTSAA 2 cut(s) 23, 170
AjnI CCWGG 1 cut(s) 273
AleI CACNNNNGTG 1 cut(s) 255
AluBI AGCT 4 cut(s) 19, 264, 286, 373
AluI AGCT 4 cut(s) 19, 264, 286, 373
Alw21I GWGCWC 1 cut(s) 127
Ama87I CYCGRG 1 cut(s) 324
AoxI GGCC 2 cut(s) 143, 186
ApeKI GCWGC 1 cut(s) 278
ApoI RAATTY 1 cut(s) 171
AspLEI GCGC 1 cut(s) 207
AsuHPI GGTGA 1 cut(s) 173
AvaI CYCGRG 1 cut(s) 324
Bbv12I GWGCWC 1 cut(s) 127
BbvI GCAGC 1 cut(s) 265
BccI CCATC 1 cut(s) 328
BciT130I CCWGG 1 cut(s) 275
BfaI CTAG 2 cut(s) 116, 374
BfmI CTRYAG 1 cut(s) 279
BfoI RGCGCY 1 cut(s) 208
BglI GCCNNNNNGGC 1 cut(s) 194
BisI GCNGC 1 cut(s) 279
BlsI GCNGC 1 cut(s) 280
Bme1390I CCNGG 1 cut(s) 275
BmeT110I CYCGRG 1 cut(s) 324
BmrFI CCNGG 1 cut(s) 275
BmsI GCATC 1 cut(s) 376
BsaJI CCNNGG 1 cut(s) 140
Bsc4I CCNNNNNNNGG 1 cut(s) 274
BseBI CCWGG 1 cut(s) 275
BseDI CCNNGG 1 cut(s) 140
BseGI GGATG 1 cut(s) 96
BseLI CCNNNNNNNGG 1 cut(s) 274
BseXI GCAGC 1 cut(s) 265
Bsh1285I CGRYCG 1 cut(s) 100
BshFI GGCC 2 cut(s) 145, 188
BsiEI CGRYCG 1 cut(s) 100
BsiHKAI GWGCWC 1 cut(s) 127
BsiHKCI CYCGRG 1 cut(s) 324
BslFI GGGAC 1 cut(s) 81
BslI CCNNNNNNNGG 1 cut(s) 274
BsmFI GGGAC 1 cut(s) 81
BsmI GAATGC 1 cut(s) 221
BsnI GGCC 2 cut(s) 145, 188
BsoBI CYCGRG 1 cut(s) 324
Bsp1286I GDGCHC 1 cut(s) 127
Bsp143I GATC 3 cut(s) 223, 312, 406
BspACI CCGC 2 cut(s) 34, 45
BspANI GGCC 2 cut(s) 145, 188
BspHI TCATGA 1 cut(s) 351
BspMAI CTGCAG 1 cut(s) 283
BsrBI CCGCTC 1 cut(s) 34
BssECI CCNNGG 1 cut(s) 140
BssMI GATC 3 cut(s) 223, 312, 406
Bst2UI CCWGG 1 cut(s) 275
Bst4CI ACNGT 2 cut(s) 51, 98
Bst6I CTCTTC 1 cut(s) 324
BstC8I GCNNGC 1 cut(s) 180
BstF5I GGATG 1 cut(s) 96
BstH2I RGCGCY 1 cut(s) 208
BstHHI GCGC 1 cut(s) 207
BstKTI GATC 3 cut(s) 226, 315, 409
BstMBI GATC 3 cut(s) 223, 312, 406
BstMCI CGRYCG 1 cut(s) 100
BstMWI GCNNNNNNNGC 2 cut(s) 194, 270
BstNI CCWGG 1 cut(s) 275
BstSCI CCNGG 1 cut(s) 273
BstSFI CTRYAG 1 cut(s) 279
BstV1I GCAGC 1 cut(s) 265
BsuRI GGCC 2 cut(s) 145, 188
BtsCI GGATG 1 cut(s) 96
BtsIMutI CAGTG 1 cut(s) 125
Cac8I GCNNGC 1 cut(s) 180
CciI TCATGA 1 cut(s) 351
CfoI GCGC 1 cut(s) 207
Csp6I GTAC 1 cut(s) 94
CviAII CATG 2 cut(s) 209, 352
CviQI GTAC 1 cut(s) 94
DpnI GATC 3 cut(s) 225, 314, 408
DpnII GATC 3 cut(s) 223, 312, 406
Eam1104I CTCTTC 1 cut(s) 324
EarI CTCTTC 1 cut(s) 324
Eco88I CYCGRG 1 cut(s) 324
EcoRII CCWGG 1 cut(s) 273
EcoT22I ATGCAT 1 cut(s) 221
FaeI CATG 2 cut(s) 212, 355
FaiI YATR 7 cut(s) 81, 185, 210, 231, 344, 353, 366
FaqI GGGAC 1 cut(s) 81
FatI CATG 2 cut(s) 208, 351
Fnu4HI GCNGC 1 cut(s) 279
FokI GGATG 1 cut(s) 103
Fsp4HI GCNGC 1 cut(s) 279
FspBI CTAG 2 cut(s) 116, 374
GlaI GCGC 1 cut(s) 206
GluI GCNGC 1 cut(s) 279
HaeII RGCGCY 1 cut(s) 208
HaeIII GGCC 2 cut(s) 145, 188
HhaI GCGC 1 cut(s) 207
Hin1II CATG 2 cut(s) 212, 355
Hin6I GCGC 1 cut(s) 205
HinP1I GCGC 1 cut(s) 205
HinfI GANTC 2 cut(s) 6, 166
HphI GGTGA 1 cut(s) 173
Hpy188I TCNGA 1 cut(s) 141
Hpy188III TCNNGA 4 cut(s) 10, 316, 326, 352
HpyAV CCTTC 1 cut(s) 67
HpyCH4III ACNGT 2 cut(s) 51, 98
HpyCH4IV ACGT 1 cut(s) 149
HpyCH4V TGCA 2 cut(s) 219, 281
HpyF10VI GCNNNNNNNGC 2 cut(s) 194, 270
HpySE526I ACGT 1 cut(s) 149
Hsp92II CATG 2 cut(s) 212, 355
HspAI GCGC 1 cut(s) 205
Kzo9I GATC 3 cut(s) 223, 312, 406
LpnPI CCDG 2 cut(s) 260, 287
Lsp1109I GCAGC 1 cut(s) 265
LweI GCATC 1 cut(s) 376
MaeI CTAG 2 cut(s) 116, 374
MaeII ACGT 1 cut(s) 149
MaeIII GTNAC 1 cut(s) 337
MalI GATC 3 cut(s) 225, 314, 408
MbiI CCGCTC 1 cut(s) 34
MboI GATC 3 cut(s) 223, 312, 406
MboII GAAGA 1 cut(s) 341
MfeI CAATTG 1 cut(s) 236
MhlI GDGCHC 1 cut(s) 127
MluCI AATT 2 cut(s) 171, 236
MlyI GAGTC 1 cut(s) 15
MnlI CCTC 2 cut(s) 78, 135
Mph1103I ATGCAT 1 cut(s) 221
MseI TTAA 2 cut(s) 53, 396
MslI CAYNNNNRTG 1 cut(s) 255
MspR9I CCNGG 1 cut(s) 275
MunI CAATTG 1 cut(s) 236
Mva1269I GAATGC 1 cut(s) 221
MvaI CCWGG 1 cut(s) 275
MwoI GCNNNNNNNGC 2 cut(s) 194, 270
NdeII GATC 3 cut(s) 223, 312, 406
NlaIII CATG 2 cut(s) 212, 355
NsiI ATGCAT 1 cut(s) 221
OliI CACNNNNGTG 1 cut(s) 255
PaeR7I CTCGAG 1 cut(s) 324
PagI TCATGA 1 cut(s) 351
PctI GAATGC 1 cut(s) 221
PfeI GAWTC 1 cut(s) 166
PkrI GCNGC 1 cut(s) 280
PleI GAGTC 1 cut(s) 14
PpsI GAGTC 1 cut(s) 14
PsiI TTATAA 1 cut(s) 231
Psp1406I AACGTT 1 cut(s) 149
Psp6I CCWGG 1 cut(s) 273
PspGI CCWGG 1 cut(s) 273
PstI CTGCAG 1 cut(s) 283
RsaI GTAC 1 cut(s) 95
RsaNI GTAC 1 cut(s) 94
RseI CAYNNNNRTG 1 cut(s) 255
SaqAI TTAA 2 cut(s) 53, 396
SatI GCNGC 1 cut(s) 279
Sau3AI GATC 3 cut(s) 223, 312, 406
SchI GAGTC 1 cut(s) 15
ScrFI CCNGG 1 cut(s) 275
SduI GDGCHC 1 cut(s) 127
SetI ASST 5 cut(s) 21, 152, 266, 288, 375
SfaNI GCATC 1 cut(s) 376
SfcI CTRYAG 1 cut(s) 279
Sfr274I CTCGAG 1 cut(s) 324
SlaI CTCGAG 1 cut(s) 324
SmiMI CAYNNNNRTG 1 cut(s) 255
SmlI CTYRAG 1 cut(s) 324
SmoI CTYRAG 1 cut(s) 324
Sse9I AATT 2 cut(s) 171, 236
SsiI CCGC 2 cut(s) 34, 45
SspMI CTAG 2 cut(s) 116, 374
StyD4I CCNGG 1 cut(s) 273
TaaI ACNGT 2 cut(s) 51, 98
TaiI ACGT 1 cut(s) 152
TaqI TCGA 3 cut(s) 60, 213, 325
TasI AATT 2 cut(s) 171, 236
TfiI GAWTC 1 cut(s) 166
Tru1I TTAA 2 cut(s) 53, 396
Tru9I TTAA 2 cut(s) 53, 396
TscAI CASTG 1 cut(s) 132
TseI GCWGC 1 cut(s) 278
TspDTI ATGAA 1 cut(s) 368
TspRI CASTG 1 cut(s) 132
XapI RAATTY 1 cut(s) 171
XhoI CTCGAG 1 cut(s) 324
XspI CTAG 2 cut(s) 116, 374
Zsp2I ATGCAT 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.