Rh5CG484400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0021442
Physical Location & Seq
Forward (+)
67587598 .. 67588376
779 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG484400.1

Sequence Viewer

Length: 327 bp
ATGAGAGTCAGGAAAGAGCTTGAAAAGGCAGAGCGGAGAGCCCCCGCACAGTTAATGTTCGACTTGGGACAGAAGGCTTATGGGAGGGGAATGTACGGTCGTGCCTTTGAGTTCCTAGAACGAGCACTGACAATCATTCCGAGGCCAACGTTATTTGGTGGTGAGATTCAAATTTGGCTTGCTATGGCCTATGAGGCAAATAAGCACTATGTCAATTGCATTGATCTTTATAAGCAATTGGAGAACAAGCACCCAAGTGTCAGCTTCCCACGCCAGGCTGCAGAGCTTCGCTACATTTTCCAAGCACCGAAGATAAAGATTACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

12.65

Weight (kDa)

9.76

Isoelectric Point (pI)

38.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0021442)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0067811
rosa_multiflora Rmu_sc0000435.1_g000054
rosa_samantha Rh5CG484400 Rh5DG476600
rosa_wichuraiana Rw5G041570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 231
AccBSI CCGCTC 1 cut(s) 34
AciI CCGC 2 cut(s) 34, 45
AclI AACGTT 1 cut(s) 149
AcsI RAATTY 1 cut(s) 171
AfaI GTAC 1 cut(s) 95
AfiI CCNNNNNNNGG 1 cut(s) 274
AgsI TTSAA 2 cut(s) 23, 170
AjnI CCWGG 1 cut(s) 273
AleI CACNNNNGTG 1 cut(s) 255
AluBI AGCT 3 cut(s) 19, 264, 286
AluI AGCT 3 cut(s) 19, 264, 286
Alw21I GWGCWC 1 cut(s) 127
AoxI GGCC 2 cut(s) 143, 186
ApeKI GCWGC 1 cut(s) 278
ApoI RAATTY 1 cut(s) 171
AsuHPI GGTGA 1 cut(s) 173
BanII GRGCYC 1 cut(s) 43
Bbv12I GWGCWC 1 cut(s) 127
BbvI GCAGC 1 cut(s) 265
BciT130I CCWGG 1 cut(s) 275
BfaI CTAG 1 cut(s) 116
BfmI CTRYAG 1 cut(s) 279
BglI GCCNNNNNGGC 1 cut(s) 194
BisI GCNGC 1 cut(s) 279
BlsI GCNGC 1 cut(s) 280
Bme1390I CCNGG 1 cut(s) 275
BmrFI CCNGG 1 cut(s) 275
BsaJI CCNNGG 1 cut(s) 140
Bsc4I CCNNNNNNNGG 1 cut(s) 274
BseBI CCWGG 1 cut(s) 275
BseDI CCNNGG 1 cut(s) 140
BseLI CCNNNNNNNGG 1 cut(s) 274
BseXI GCAGC 1 cut(s) 265
Bsh1285I CGRYCG 1 cut(s) 100
BshFI GGCC 2 cut(s) 145, 188
BsiEI CGRYCG 1 cut(s) 100
BsiHKAI GWGCWC 1 cut(s) 127
BslFI GGGAC 1 cut(s) 81
BslI CCNNNNNNNGG 1 cut(s) 274
BsmFI GGGAC 1 cut(s) 81
BsnI GGCC 2 cut(s) 145, 188
Bsp1286I GDGCHC 2 cut(s) 43, 127
Bsp143I GATC 1 cut(s) 223
BspACI CCGC 2 cut(s) 34, 45
BspANI GGCC 2 cut(s) 145, 188
BspMAI CTGCAG 1 cut(s) 283
BsrBI CCGCTC 1 cut(s) 34
BssECI CCNNGG 1 cut(s) 140
BssMI GATC 1 cut(s) 223
Bst2UI CCWGG 1 cut(s) 275
Bst4CI ACNGT 2 cut(s) 51, 98
BstC8I GCNNGC 1 cut(s) 180
BstDEI CTNAG 1 cut(s) 324
BstKTI GATC 1 cut(s) 226
BstMBI GATC 1 cut(s) 223
BstMCI CGRYCG 1 cut(s) 100
BstMWI GCNNNNNNNGC 2 cut(s) 194, 270
BstNI CCWGG 1 cut(s) 275
BstSCI CCNGG 1 cut(s) 273
BstSFI CTRYAG 1 cut(s) 279
BstV1I GCAGC 1 cut(s) 265
BsuRI GGCC 2 cut(s) 145, 188
BtsIMutI CAGTG 1 cut(s) 125
Cac8I GCNNGC 1 cut(s) 180
Csp6I GTAC 1 cut(s) 94
CviJI RGCY 9 cut(s) 19, 41, 77, 145, 178, 188, 264, 278, 286
CviKI_1 RGCY 9 cut(s) 19, 41, 77, 145, 178, 188, 264, 278, 286
CviQI GTAC 1 cut(s) 94
DdeI CTNAG 1 cut(s) 324
DpnI GATC 1 cut(s) 225
DpnII GATC 1 cut(s) 223
Eco24I GRGCYC 1 cut(s) 43
EcoRII CCWGG 1 cut(s) 273
EcoT38I GRGCYC 1 cut(s) 43
FaiI YATR 5 cut(s) 81, 185, 192, 210, 231
FaqI GGGAC 1 cut(s) 81
FauI CCCGC 1 cut(s) 52
Fnu4HI GCNGC 1 cut(s) 279
FriOI GRGCYC 1 cut(s) 43
Fsp4HI GCNGC 1 cut(s) 279
FspBI CTAG 1 cut(s) 116
GluI GCNGC 1 cut(s) 279
HaeIII GGCC 2 cut(s) 145, 188
HinfI GANTC 2 cut(s) 6, 166
HphI GGTGA 1 cut(s) 173
Hpy188I TCNGA 1 cut(s) 141
Hpy188III TCNNGA 1 cut(s) 10
HpyAV CCTTC 1 cut(s) 67
HpyCH4III ACNGT 2 cut(s) 51, 98
HpyCH4IV ACGT 1 cut(s) 149
HpyCH4V TGCA 2 cut(s) 219, 281
HpyF10VI GCNNNNNNNGC 2 cut(s) 194, 270
HpyF3I CTNAG 1 cut(s) 324
HpySE526I ACGT 1 cut(s) 149
Kzo9I GATC 1 cut(s) 223
LpnPI CCDG 2 cut(s) 260, 287
Lsp1109I GCAGC 1 cut(s) 265
MaeI CTAG 1 cut(s) 116
MaeII ACGT 1 cut(s) 149
MalI GATC 1 cut(s) 225
MbiI CCGCTC 1 cut(s) 34
MboI GATC 1 cut(s) 223
MboII GAAGA 1 cut(s) 322
MfeI CAATTG 2 cut(s) 214, 236
MhlI GDGCHC 2 cut(s) 43, 127
MluCI AATT 3 cut(s) 171, 214, 236
MlyI GAGTC 1 cut(s) 15
MnlI CCTC 3 cut(s) 78, 135, 187
MseI TTAA 1 cut(s) 53
MslI CAYNNNNRTG 1 cut(s) 255
MspR9I CCNGG 1 cut(s) 275
MunI CAATTG 2 cut(s) 214, 236
MvaI CCWGG 1 cut(s) 275
MwoI GCNNNNNNNGC 2 cut(s) 194, 270
NdeII GATC 1 cut(s) 223
OliI CACNNNNGTG 1 cut(s) 255
PfeI GAWTC 1 cut(s) 166
PkrI GCNGC 1 cut(s) 280
PleI GAGTC 1 cut(s) 14
PpsI GAGTC 1 cut(s) 14
PsiI TTATAA 1 cut(s) 231
Psp1406I AACGTT 1 cut(s) 149
Psp6I CCWGG 1 cut(s) 273
PspGI CCWGG 1 cut(s) 273
PstI CTGCAG 1 cut(s) 283
RsaI GTAC 1 cut(s) 95
RsaNI GTAC 1 cut(s) 94
RseI CAYNNNNRTG 1 cut(s) 255
SaqAI TTAA 1 cut(s) 53
SatI GCNGC 1 cut(s) 279
Sau3AI GATC 1 cut(s) 223
SchI GAGTC 1 cut(s) 15
ScrFI CCNGG 1 cut(s) 275
SduI GDGCHC 2 cut(s) 43, 127
SetI ASST 4 cut(s) 21, 152, 266, 288
SfcI CTRYAG 1 cut(s) 279
SmiMI CAYNNNNRTG 1 cut(s) 255
Sse9I AATT 3 cut(s) 171, 214, 236
SsiI CCGC 2 cut(s) 34, 45
SspMI CTAG 1 cut(s) 116
StyD4I CCNGG 1 cut(s) 273
TaaI ACNGT 2 cut(s) 51, 98
TaiI ACGT 1 cut(s) 152
TaqI TCGA 1 cut(s) 60
TasI AATT 3 cut(s) 171, 214, 236
TfiI GAWTC 1 cut(s) 166
Tru1I TTAA 1 cut(s) 53
Tru9I TTAA 1 cut(s) 53
TscAI CASTG 1 cut(s) 132
TseI GCWGC 1 cut(s) 278
TspRI CASTG 1 cut(s) 132
XapI RAATTY 1 cut(s) 171
XspI CTAG 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.