Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0021424

Physical Location & Seq

Genomic Coordinates Reverse (-)

89487971 .. 89490430

Gene Structure 2460 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGAATGGTATTTTTCGTAGCTGCTATATAGTTCCAGCAAACTGTCTCTACAGGTCTGGCGTTTCATTGCTTGATAATAGGTATTTGGGGATTGTGTTGAATTTGGAGAAAATTTTTATAGAGTGGAACAACAAGCAATCATTTGCTCTCAAAATTCAAGGGTTACAAAGTGTAGATGGTGATACTCACAGTGCGGAAATTGACCGATATGAAATGAATAAGCCGGTTATTCGAGTGCCCAATAGAAACATTGTCCTGACACGCATTGATCCAAAGGATCCCTCCACAAGCATTCTTGTAAGAGTTAGACCTGGATGGAAGGATTTCAGGAAGTATTTGGTTGGGAAAAACAGCAGACATTTTCATGTGTTTGCATGTATGGAATCCAGTGACGACTTTGTGACAAAACTGTGGAGTGATGTTCTTGCCCCACGCGCATACCTTGTAGAGCCTCATCTGCTCAGATACCATGTTTTTGGCTTAACTCCCGGTTCCACGAAGTCTCTAAATATTATCTTTGCAGATGGACAGTGCCCTCCAGGGATGACAGTTATTCTTGATGGGAAGAATAATGCCTGGAGGAACGAAGATAAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004647 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008420 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032870 GO:0032991 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070887 GO:0070940 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF dsrm

Protein Analysis

199

Amino Acids

22.73

Weight (kDa)

9.19

Isoelectric Point (pI)

44.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021424)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0083781
rosa_multiflora	Rmu_sc0003602.1_g000005
rosa_samantha	Rh5AG539100 Rh5BG564400 Rh5DG572800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	435
AciI	CCGC	1 cut(s)	194
AclWI	GGATC	3 cut(s)	263, 272, 285
AcsI	RAATTY	3 cut(s)	100, 111, 153
AgsI	TTSAA	2 cut(s)	100, 158
AjnI	CCWGG	3 cut(s)	310, 538, 575
AluBI	AGCT	2 cut(s)	21, 596
AluI	AGCT	2 cut(s)	21, 596
Alw26I	GTCTC	2 cut(s)	50, 507
AlwI	GGATC	3 cut(s)	263, 272, 285
ApeKI	GCWGC	1 cut(s)	21
ApoI	RAATTY	3 cut(s)	100, 111, 153
Asp700I	GAANNNNTTC	1 cut(s)	323
AspLEI	GCGC	1 cut(s)	437
AsuC2I	CCSGG	1 cut(s)	489
AsuHPI	GGTGA	1 cut(s)	191
BaeGI	GKGCMC	2 cut(s)	240, 536
BamHI	GGATCC	1 cut(s)	277
BbvI	GCAGC	1 cut(s)	8
BccI	CCATC	4 cut(s)	170, 309, 518, 554
BciT130I	CCWGG	3 cut(s)	312, 540, 577
BcnI	CCSGG	1 cut(s)	489
BcoDI	GTCTC	2 cut(s)	50, 507
BfmI	CTRYAG	1 cut(s)	49
BisI	GCNGC	1 cut(s)	22
BlsI	GCNGC	1 cut(s)	23
Bme1390I	CCNGG	4 cut(s)	312, 489, 540, 577
BmiI	GGNNCC	2 cut(s)	279, 493
BmrFI	CCNGG	4 cut(s)	312, 489, 540, 577
BpmI	CTGGAG	2 cut(s)	522, 598
BpuMI	CCSGG	1 cut(s)	489
BsaJI	CCNNGG	1 cut(s)	539
Bse118I	RCCGGY	1 cut(s)	223
Bse1I	ACTGG	1 cut(s)	387
Bse3DI	GCAATG	1 cut(s)	65
BseBI	CCWGG	3 cut(s)	312, 540, 577
BseDI	CCNNGG	1 cut(s)	539
BseGI	GGATG	2 cut(s)	320, 549
BseMI	GCAATG	1 cut(s)	65
BseMII	CTCAG	1 cut(s)	475
BseNI	ACTGG	1 cut(s)	387
BseSI	GKGCMC	2 cut(s)	240, 536
BseXI	GCAGC	1 cut(s)	8
Bsh1236I	CGCG	1 cut(s)	435
BsiSI	CCGG	2 cut(s)	224, 489
BsmAI	GTCTC	2 cut(s)	50, 507
BsmI	GAATGC	1 cut(s)	291
Bsp1286I	GDGCHC	2 cut(s)	240, 536
Bsp143I	GATC	2 cut(s)	268, 277
BspACI	CCGC	1 cut(s)	194
BspCNI	CTCAG	1 cut(s)	474
BspFNI	CGCG	1 cut(s)	435
BspLI	GGNNCC	2 cut(s)	279, 493
BspPI	GGATC	3 cut(s)	263, 272, 285
BsrDI	GCAATG	1 cut(s)	65
BsrFI	RCCGGY	1 cut(s)	223
BsrI	ACTGG	1 cut(s)	387
BssAI	RCCGGY	1 cut(s)	223
BssECI	CCNNGG	1 cut(s)	539
BssMI	GATC	2 cut(s)	268, 277
Bst2UI	CCWGG	3 cut(s)	312, 540, 577
Bst4CI	ACNGT	5 cut(s)	44, 191, 411, 531, 550
BstDEI	CTNAG	1 cut(s)	461
BstF5I	GGATG	2 cut(s)	320, 549
BstFNI	CGCG	1 cut(s)	435
BstHHI	GCGC	1 cut(s)	437
BstKTI	GATC	2 cut(s)	271, 280
BstMAI	GTCTC	2 cut(s)	50, 507
BstMBI	GATC	2 cut(s)	268, 277
BstMWI	GCNNNNNNNGC	2 cut(s)	434, 457
BstNI	CCWGG	3 cut(s)	312, 540, 577
BstNSI	RCATGY	1 cut(s)	378
BstSCI	CCNGG	4 cut(s)	310, 487, 538, 575
BstSFI	CTRYAG	1 cut(s)	49
BstSLI	GKGCMC	2 cut(s)	240, 536
BstUI	CGCG	1 cut(s)	435
BstV1I	GCAGC	1 cut(s)	8
BstX2I	RGATCY	1 cut(s)	277
BstXI	CCANNNNNNTGG	1 cut(s)	476
BstYI	RGATCY	1 cut(s)	277
BtsCI	GGATG	2 cut(s)	320, 549
BtsIMutI	CAGTG	3 cut(s)	196, 394, 536
CfoI	GCGC	1 cut(s)	437
Cfr10I	RCCGGY	1 cut(s)	223
CviAII	CATG	3 cut(s)	365, 375, 470
CviJI	RGCY	5 cut(s)	21, 223, 451, 480, 596
CviKI_1	RGCY	5 cut(s)	21, 223, 451, 480, 596
DdeI	CTNAG	1 cut(s)	461
DpnI	GATC	2 cut(s)	270, 279
DpnII	GATC	2 cut(s)	268, 277
EcoRII	CCWGG	3 cut(s)	310, 538, 575
FaeI	CATG	3 cut(s)	368, 378, 473
FaiI	YATR	9 cut(s)	27, 29, 119, 210, 366, 376, 380, 439, 471
FatI	CATG	3 cut(s)	364, 374, 469
Fnu4HI	GCNGC	1 cut(s)	22
FokI	GGATG	2 cut(s)	327, 556
Fsp4HI	GCNGC	1 cut(s)	22
GlaI	GCGC	1 cut(s)	436
GluI	GCNGC	1 cut(s)	22
GsuI	CTGGAG	2 cut(s)	522, 598
HapII	CCGG	2 cut(s)	224, 489
HhaI	GCGC	1 cut(s)	437
Hin1II	CATG	3 cut(s)	368, 378, 473
Hin6I	GCGC	1 cut(s)	435
HinP1I	GCGC	1 cut(s)	435
HindIII	AAGCTT	1 cut(s)	594
HinfI	GANTC	1 cut(s)	383
HpaII	CCGG	2 cut(s)	224, 489
HphI	GGTGA	1 cut(s)	191
Hpy188I	TCNGA	1 cut(s)	464
Hpy188III	TCNNGA	3 cut(s)	256, 328, 557
HpyAV	CCTTC	1 cut(s)	313
HpyCH4III	ACNGT	5 cut(s)	44, 191, 411, 531, 550
HpyCH4V	TGCA	2 cut(s)	374, 521
HpyF10VI	GCNNNNNNNGC	2 cut(s)	434, 457
HpyF3I	CTNAG	1 cut(s)	461
Hsp92II	CATG	3 cut(s)	368, 378, 473
HspAI	GCGC	1 cut(s)	435
Kzo9I	GATC	2 cut(s)	268, 277
Lsp1109I	GCAGC	1 cut(s)	8
MaeIII	GTNAC	3 cut(s)	162, 389, 400
MalI	GATC	2 cut(s)	270, 279
MboI	GATC	2 cut(s)	268, 277
MboII	GAAGA	2 cut(s)	577, 599
MflI	RGATCY	1 cut(s)	277
MhlI	GDGCHC	2 cut(s)	240, 536
MluCI	AATT	4 cut(s)	100, 111, 153, 198
MnlI	CCTC	4 cut(s)	292, 462, 546, 573
MroXI	GAANNNNTTC	1 cut(s)	323
MseI	TTAA	1 cut(s)	482
MslI	CAYNNNNRTG	1 cut(s)	363
MspI	CCGG	2 cut(s)	224, 489
MspR9I	CCNGG	4 cut(s)	312, 489, 540, 577
Mva1269I	GAATGC	1 cut(s)	291
MvaI	CCWGG	3 cut(s)	312, 540, 577
MvnI	CGCG	1 cut(s)	435
MwoI	GCNNNNNNNGC	2 cut(s)	434, 457
NciI	CCSGG	1 cut(s)	489
NdeII	GATC	2 cut(s)	268, 277
NlaIII	CATG	3 cut(s)	368, 378, 473
NlaIV	GGNNCC	2 cut(s)	279, 493
NmuCI	GTSAC	2 cut(s)	389, 400
NspI	RCATGY	1 cut(s)	378
PctI	GAATGC	1 cut(s)	291
PdmI	GAANNNNTTC	1 cut(s)	323
PfeI	GAWTC	1 cut(s)	383
PkrI	GCNGC	1 cut(s)	23
Psp6I	CCWGG	3 cut(s)	310, 538, 575
PspGI	CCWGG	3 cut(s)	310, 538, 575
PspN4I	GGNNCC	2 cut(s)	279, 493
PsuI	RGATCY	1 cut(s)	277
RseI	CAYNNNNRTG	1 cut(s)	363
SaqAI	TTAA	1 cut(s)	482
SatI	GCNGC	1 cut(s)	22
Sau3AI	GATC	2 cut(s)	268, 277
ScrFI	CCNGG	4 cut(s)	312, 489, 540, 577
SduI	GDGCHC	2 cut(s)	240, 536
SetI	ASST	6 cut(s)	23, 56, 83, 313, 444, 598
SfcI	CTRYAG	1 cut(s)	49
SmiMI	CAYNNNNRTG	1 cut(s)	363
Sse9I	AATT	4 cut(s)	100, 111, 153, 198
SsiI	CCGC	1 cut(s)	194
SspI	AATATT	1 cut(s)	511
StyD4I	CCNGG	4 cut(s)	310, 487, 538, 575
TaaI	ACNGT	5 cut(s)	44, 191, 411, 531, 550
TaqI	TCGA	1 cut(s)	232
TaqII	GACCGA	1 cut(s)	219
TasI	AATT	4 cut(s)	100, 111, 153, 198
TfiI	GAWTC	1 cut(s)	383
Tru1I	TTAA	1 cut(s)	482
Tru9I	TTAA	1 cut(s)	482
TscAI	CASTG	3 cut(s)	196, 394, 536
TseFI	GTSAC	2 cut(s)	389, 400
TseI	GCWGC	1 cut(s)	21
Tsp45I	GTSAC	2 cut(s)	389, 400
TspDTI	ATGAA	5 cut(s)	17, 54, 225, 230, 353
TspRI	CASTG	3 cut(s)	196, 394, 536
XapI	RAATTY	3 cut(s)	100, 111, 153
XceI	RCATGY	1 cut(s)	378
XmnI	GAANNNNTTC	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.