Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003602.1

Orthogroup ID

OG0021424

Physical Location & Seq

Genomic Coordinates Reverse (-)

31045 .. 33666

Gene Structure 2622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003602.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

atgattcaagagcaagataaagaacggatgtctcatcctgatatttcgattgaaataccgatgaatggtattttttgtagctgctacataattccagcaaaccgtctctacaggtctggcgtttcattgcttgatactaggtatttggggattgtgttgaatttggagaaattttttatagagtggaacaataagcaatcatttgctctcaaaaatcaagggttacgaagtgtagatggtgatactcacagtgcggaaattgaccgatatgaaatgaataagccggttattcgagttcccaacagaaacattgtcctgacacgcattgatccaaaggatccctccacaagcattcttgtaagagttagacctggatggaaggatttcaggaagtatttggttgggaaaaacagcagatgttttcatgtgtttgcatctatggaatccagtgacgactttgtgacaaaactgtggagtgatgttcttgacccacgcgcagaccttgtagagcctcatctgctcagataccatgttttttgcttaactcccggttccacgaagtctctaaatattatcttcgcagatggacagtgccctccagggatgacagttattcttgataggaagaataatgcctggaggaacgaagataaagctcgagtgtttgaaattaaggagttcaaagcttatcaattttctgaaaaggttatcctgttaggattttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004647 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008420 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032870 GO:0032991 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070887 GO:0070940 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF dsrm

Protein Analysis

241

Amino Acids

27.93

Weight (kDa)

8.75

Isoelectric Point (pI)

37.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021424)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0083781
rosa_multiflora	Rmu_sc0003602.1_g000005
rosa_samantha	Rh5AG539100 Rh5BG564400 Rh5DG572800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	495
AciI	CCGC	1 cut(s)	254
AclWI	GGATC	3 cut(s)	323, 332, 345
AcsI	RAATTY	2 cut(s)	160, 170
AfiI	CCNNNNNNNGG	1 cut(s)	65
AgsI	TTSAA	5 cut(s)	8, 53, 160, 668, 682
AjnI	CCWGG	3 cut(s)	370, 598, 635
AluBI	AGCT	3 cut(s)	81, 656, 686
AluI	AGCT	3 cut(s)	81, 656, 686
Alw26I	GTCTC	3 cut(s)	36, 110, 567
AlwI	GGATC	3 cut(s)	323, 332, 345
Ama87I	CYCGRG	1 cut(s)	657
ApeKI	GCWGC	1 cut(s)	81
ApoI	RAATTY	2 cut(s)	160, 170
Asp700I	GAANNNNTTC	1 cut(s)	383
AspLEI	GCGC	1 cut(s)	497
AsuC2I	CCSGG	1 cut(s)	549
AsuHPI	GGTGA	1 cut(s)	251
AvaI	CYCGRG	1 cut(s)	657
BaeGI	GKGCMC	1 cut(s)	596
BamHI	GGATCC	1 cut(s)	337
BbvI	GCAGC	1 cut(s)	68
BccI	CCATC	3 cut(s)	230, 369, 578
BciT130I	CCWGG	3 cut(s)	372, 600, 637
BcnI	CCSGG	1 cut(s)	549
BcoDI	GTCTC	3 cut(s)	36, 110, 567
BfaI	CTAG	1 cut(s)	138
BfmI	CTRYAG	1 cut(s)	109
BisI	GCNGC	1 cut(s)	82
BlsI	GCNGC	1 cut(s)	83
Bme1390I	CCNGG	4 cut(s)	372, 549, 600, 637
BmeT110I	CYCGRG	1 cut(s)	657
BmiI	GGNNCC	2 cut(s)	339, 553
BmrFI	CCNGG	4 cut(s)	372, 549, 600, 637
BmsI	GCATC	1 cut(s)	443
BpmI	CTGGAG	2 cut(s)	582, 658
BpuMI	CCSGG	1 cut(s)	549
BsaJI	CCNNGG	1 cut(s)	599
Bsc4I	CCNNNNNNNGG	1 cut(s)	65
Bse118I	RCCGGY	1 cut(s)	283
Bse1I	ACTGG	1 cut(s)	447
Bse3DI	GCAATG	1 cut(s)	125
BseBI	CCWGG	3 cut(s)	372, 600, 637
BseDI	CCNNGG	1 cut(s)	599
BseGI	GGATG	4 cut(s)	33, 34, 380, 609
BseLI	CCNNNNNNNGG	1 cut(s)	65
BseMI	GCAATG	1 cut(s)	125
BseMII	CTCAG	1 cut(s)	535
BseNI	ACTGG	1 cut(s)	447
BseSI	GKGCMC	1 cut(s)	596
BseXI	GCAGC	1 cut(s)	68
Bsh1236I	CGCG	1 cut(s)	495
BsiHKCI	CYCGRG	1 cut(s)	657
BsiSI	CCGG	2 cut(s)	284, 549
BslI	CCNNNNNNNGG	1 cut(s)	65
BsmAI	GTCTC	3 cut(s)	36, 110, 567
BsmBI	CGTCTC	1 cut(s)	110
BsmI	GAATGC	1 cut(s)	351
BsoBI	CYCGRG	1 cut(s)	657
Bsp1286I	GDGCHC	1 cut(s)	596
Bsp143I	GATC	2 cut(s)	328, 337
BspACI	CCGC	1 cut(s)	254
BspCNI	CTCAG	1 cut(s)	534
BspFNI	CGCG	1 cut(s)	495
BspLI	GGNNCC	2 cut(s)	339, 553
BspPI	GGATC	3 cut(s)	323, 332, 345
BsrDI	GCAATG	1 cut(s)	125
BsrFI	RCCGGY	1 cut(s)	283
BsrI	ACTGG	1 cut(s)	447
BssAI	RCCGGY	1 cut(s)	283
BssECI	CCNNGG	1 cut(s)	599
BssMI	GATC	2 cut(s)	328, 337
Bst2UI	CCWGG	3 cut(s)	372, 600, 637
Bst4CI	ACNGT	5 cut(s)	104, 251, 471, 591, 610
BstDEI	CTNAG	1 cut(s)	521
BstF5I	GGATG	4 cut(s)	33, 34, 380, 609
BstFNI	CGCG	1 cut(s)	495
BstHHI	GCGC	1 cut(s)	497
BstKTI	GATC	2 cut(s)	331, 340
BstMAI	GTCTC	3 cut(s)	36, 110, 567
BstMBI	GATC	2 cut(s)	328, 337
BstMWI	GCNNNNNNNGC	1 cut(s)	517
BstNI	CCWGG	3 cut(s)	372, 600, 637
BstSCI	CCNGG	4 cut(s)	370, 547, 598, 635
BstSFI	CTRYAG	1 cut(s)	109
BstSLI	GKGCMC	1 cut(s)	596
BstUI	CGCG	1 cut(s)	495
BstV1I	GCAGC	1 cut(s)	68
BstX2I	RGATCY	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	337
BtsCI	GGATG	4 cut(s)	33, 34, 380, 609
BtsIMutI	CAGTG	3 cut(s)	256, 454, 596
CfoI	GCGC	1 cut(s)	497
Cfr10I	RCCGGY	1 cut(s)	283
CviAII	CATG	2 cut(s)	425, 530
CviJI	RGCY	5 cut(s)	81, 283, 511, 656, 686
CviKI_1	RGCY	5 cut(s)	81, 283, 511, 656, 686
DdeI	CTNAG	1 cut(s)	521
DpnI	GATC	2 cut(s)	330, 339
DpnII	GATC	2 cut(s)	328, 337
Eco88I	CYCGRG	1 cut(s)	657
EcoRII	CCWGG	3 cut(s)	370, 598, 635
Esp3I	CGTCTC	1 cut(s)	110
FaeI	CATG	2 cut(s)	428, 533
FaiI	YATR	6 cut(s)	89, 179, 270, 426, 440, 531
FatI	CATG	2 cut(s)	424, 529
Fnu4HI	GCNGC	1 cut(s)	82
FokI	GGATG	4 cut(s)	21, 40, 387, 616
Fsp4HI	GCNGC	1 cut(s)	82
FspBI	CTAG	1 cut(s)	138
GlaI	GCGC	1 cut(s)	496
GluI	GCNGC	1 cut(s)	82
GsuI	CTGGAG	2 cut(s)	582, 658
HapII	CCGG	2 cut(s)	284, 549
HhaI	GCGC	1 cut(s)	497
Hin1II	CATG	2 cut(s)	428, 533
Hin6I	GCGC	1 cut(s)	495
HinP1I	GCGC	1 cut(s)	495
HindIII	AAGCTT	1 cut(s)	684
HinfI	GANTC	2 cut(s)	4, 443
HpaII	CCGG	2 cut(s)	284, 549
HphI	GGTGA	1 cut(s)	251
Hpy188I	TCNGA	2 cut(s)	524, 700
Hpy188III	TCNNGA	6 cut(s)	8, 38, 316, 388, 485, 617
HpyAV	CCTTC	1 cut(s)	373
HpyCH4III	ACNGT	5 cut(s)	104, 251, 471, 591, 610
HpyCH4V	TGCA	1 cut(s)	434
HpyF10VI	GCNNNNNNNGC	1 cut(s)	517
HpyF3I	CTNAG	1 cut(s)	521
Hsp92II	CATG	2 cut(s)	428, 533
HspAI	GCGC	1 cut(s)	495
Kzo9I	GATC	2 cut(s)	328, 337
Lsp1109I	GCAGC	1 cut(s)	68
LweI	GCATC	1 cut(s)	443
MaeI	CTAG	1 cut(s)	138
MaeIII	GTNAC	3 cut(s)	222, 449, 460
MalI	GATC	2 cut(s)	330, 339
MboI	GATC	2 cut(s)	328, 337
MboII	GAAGA	3 cut(s)	568, 637, 659
MflI	RGATCY	1 cut(s)	337
MhlI	GDGCHC	1 cut(s)	596
MluCI	AATT	6 cut(s)	90, 160, 170, 258, 669, 692
MnlI	CCTC	4 cut(s)	352, 522, 606, 633
MroXI	GAANNNNTTC	1 cut(s)	383
MseI	TTAA	2 cut(s)	542, 672
MspI	CCGG	2 cut(s)	284, 549
MspR9I	CCNGG	4 cut(s)	372, 549, 600, 637
Mva1269I	GAATGC	1 cut(s)	351
MvaI	CCWGG	3 cut(s)	372, 600, 637
MvnI	CGCG	1 cut(s)	495
MwoI	GCNNNNNNNGC	1 cut(s)	517
NciI	CCSGG	1 cut(s)	549
NdeII	GATC	2 cut(s)	328, 337
NlaIII	CATG	2 cut(s)	428, 533
NlaIV	GGNNCC	2 cut(s)	339, 553
NmuCI	GTSAC	2 cut(s)	449, 460
PaeR7I	CTCGAG	1 cut(s)	657
PctI	GAATGC	1 cut(s)	351
PdmI	GAANNNNTTC	1 cut(s)	383
PfeI	GAWTC	2 cut(s)	4, 443
PkrI	GCNGC	1 cut(s)	83
Psp6I	CCWGG	3 cut(s)	370, 598, 635
PspGI	CCWGG	3 cut(s)	370, 598, 635
PspN4I	GGNNCC	2 cut(s)	339, 553
PspXI	VCTCGAGB	1 cut(s)	657
PsuI	RGATCY	1 cut(s)	337
SaqAI	TTAA	2 cut(s)	542, 672
SatI	GCNGC	1 cut(s)	82
Sau3AI	GATC	2 cut(s)	328, 337
ScrFI	CCNGG	4 cut(s)	372, 549, 600, 637
SduI	GDGCHC	1 cut(s)	596
SetI	ASST	8 cut(s)	83, 116, 143, 373, 504, 658, 688, 708
SfaNI	GCATC	1 cut(s)	443
SfcI	CTRYAG	1 cut(s)	109
Sfr274I	CTCGAG	1 cut(s)	657
SlaI	CTCGAG	1 cut(s)	657
SmlI	CTYRAG	1 cut(s)	657
SmoI	CTYRAG	1 cut(s)	657
Sse9I	AATT	6 cut(s)	90, 160, 170, 258, 669, 692
SsiI	CCGC	1 cut(s)	254
SspI	AATATT	1 cut(s)	571
SspMI	CTAG	1 cut(s)	138
StyD4I	CCNGG	4 cut(s)	370, 547, 598, 635
TaaI	ACNGT	5 cut(s)	104, 251, 471, 591, 610
TaqI	TCGA	3 cut(s)	47, 292, 658
TaqII	GACCGA	1 cut(s)	279
TasI	AATT	6 cut(s)	90, 160, 170, 258, 669, 692
TfiI	GAWTC	2 cut(s)	4, 443
Tru1I	TTAA	2 cut(s)	542, 672
Tru9I	TTAA	2 cut(s)	542, 672
TscAI	CASTG	3 cut(s)	256, 454, 596
TseFI	GTSAC	2 cut(s)	449, 460
TseI	GCWGC	1 cut(s)	81
Tsp45I	GTSAC	2 cut(s)	449, 460
TspDTI	ATGAA	5 cut(s)	77, 114, 285, 290, 413
TspGWI	ACGGA	1 cut(s)	40
TspRI	CASTG	3 cut(s)	256, 454, 596
XapI	RAATTY	2 cut(s)	160, 170
XhoI	CTCGAG	1 cut(s)	657
XmnI	GAANNNNTTC	1 cut(s)	383
XspI	CTAG	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.