Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0021424

Physical Location & Seq

Genomic Coordinates Reverse (-)

89426412 .. 89427684

Gene Structure 1273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG564400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGATTCAAGAGCAAGAGAAAGAACGGATGTCTCATCCTGATATTTCGATTGAAATACCGATGAATGGTATTTTTCGTAGCTGCTACATAGTTCCAGCAAACCGTCTCTACAGGTCTGGCGTTTCATTGCTTGATAATAGGTATTTGGGGATTGTGTTGAATTTGGAGAAATTTTTTATAGAGTGGAACAATAAGCAATCATTTGCTCTCAAAATTCAAGGGTTACGAAGTGTAGATGGTGATACTCACAGTGCGGAAATTGACCGATATGAAATGAATAAGCCGGTTATTCGAGTGCCCAACAGAAACATTGTCCTGACACGCATTGATCCAAAGGATCCCTCCACAAGCATTCTTGTAAGAGTTAGACCTGGATGGAAGGATTTCAGGAAGTATTTGGTTGGGAAAAATAGCAGACGTTTTCATGTGTTTGCATGTATGGAATCCAGTGACGACTTTGTGACAAAACTGTGGAGTGATGTTCTTGACCCACGCGCAGACCTTGTAGAGCCTTATCTGCTCAGATACCATGTTTTTGGCTTAACTCCCTGTATTCCTTTGTTTCTTTTCTTCTCCTTTTTATTACTACATCGGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004647 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008420 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032870 GO:0032991 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070887 GO:0070940 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF dsrm

Protein Analysis

199

Amino Acids

23.44

Weight (kDa)

9.15

Isoelectric Point (pI)

46.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021424)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0083781
rosa_multiflora	Rmu_sc0003602.1_g000005
rosa_samantha	Rh5AG539100 Rh5BG564400 Rh5DG572800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	495
AciI	CCGC	1 cut(s)	254
AclWI	GGATC	3 cut(s)	323, 332, 345
AcsI	RAATTY	3 cut(s)	160, 170, 213
AfiI	CCNNNNNNNGG	1 cut(s)	65
AgsI	TTSAA	4 cut(s)	8, 53, 160, 218
AjnI	CCWGG	1 cut(s)	370
AluBI	AGCT	1 cut(s)	81
AluI	AGCT	1 cut(s)	81
Alw26I	GTCTC	2 cut(s)	36, 110
AlwI	GGATC	3 cut(s)	323, 332, 345
ApeKI	GCWGC	1 cut(s)	81
ApoI	RAATTY	3 cut(s)	160, 170, 213
Asp700I	GAANNNNTTC	1 cut(s)	383
AspLEI	GCGC	1 cut(s)	497
AsuHPI	GGTGA	1 cut(s)	251
BaeGI	GKGCMC	1 cut(s)	300
BamHI	GGATCC	1 cut(s)	337
BbvI	GCAGC	1 cut(s)	68
BccI	CCATC	2 cut(s)	230, 369
BciT130I	CCWGG	1 cut(s)	372
BcoDI	GTCTC	2 cut(s)	36, 110
BfmI	CTRYAG	1 cut(s)	109
BisI	GCNGC	1 cut(s)	82
BlsI	GCNGC	1 cut(s)	83
Bme1390I	CCNGG	1 cut(s)	372
BmiI	GGNNCC	1 cut(s)	339
BmrFI	CCNGG	1 cut(s)	372
Bsc4I	CCNNNNNNNGG	1 cut(s)	65
Bse118I	RCCGGY	1 cut(s)	283
Bse1I	ACTGG	1 cut(s)	447
Bse3DI	GCAATG	1 cut(s)	125
BseBI	CCWGG	1 cut(s)	372
BseGI	GGATG	3 cut(s)	33, 34, 380
BseLI	CCNNNNNNNGG	1 cut(s)	65
BseMI	GCAATG	1 cut(s)	125
BseMII	CTCAG	1 cut(s)	535
BseNI	ACTGG	1 cut(s)	447
BseSI	GKGCMC	1 cut(s)	300
BseXI	GCAGC	1 cut(s)	68
Bsh1236I	CGCG	1 cut(s)	495
BsiSI	CCGG	1 cut(s)	284
BslI	CCNNNNNNNGG	1 cut(s)	65
BsmAI	GTCTC	2 cut(s)	36, 110
BsmBI	CGTCTC	1 cut(s)	110
BsmI	GAATGC	1 cut(s)	351
Bsp1286I	GDGCHC	1 cut(s)	300
Bsp143I	GATC	2 cut(s)	328, 337
BspACI	CCGC	1 cut(s)	254
BspCNI	CTCAG	1 cut(s)	534
BspFNI	CGCG	1 cut(s)	495
BspLI	GGNNCC	1 cut(s)	339
BspPI	GGATC	3 cut(s)	323, 332, 345
BsrDI	GCAATG	1 cut(s)	125
BsrFI	RCCGGY	1 cut(s)	283
BsrI	ACTGG	1 cut(s)	447
BssAI	RCCGGY	1 cut(s)	283
BssMI	GATC	2 cut(s)	328, 337
Bst2UI	CCWGG	1 cut(s)	372
Bst4CI	ACNGT	3 cut(s)	104, 251, 471
BstDEI	CTNAG	1 cut(s)	521
BstF5I	GGATG	3 cut(s)	33, 34, 380
BstFNI	CGCG	1 cut(s)	495
BstHHI	GCGC	1 cut(s)	497
BstKTI	GATC	2 cut(s)	331, 340
BstMAI	GTCTC	2 cut(s)	36, 110
BstMBI	GATC	2 cut(s)	328, 337
BstMWI	GCNNNNNNNGC	1 cut(s)	517
BstNI	CCWGG	1 cut(s)	372
BstNSI	RCATGY	1 cut(s)	438
BstSCI	CCNGG	1 cut(s)	370
BstSFI	CTRYAG	1 cut(s)	109
BstSLI	GKGCMC	1 cut(s)	300
BstUI	CGCG	1 cut(s)	495
BstV1I	GCAGC	1 cut(s)	68
BstX2I	RGATCY	1 cut(s)	337
BstXI	CCANNNNNNTGG	1 cut(s)	536
BstYI	RGATCY	1 cut(s)	337
BtsCI	GGATG	3 cut(s)	33, 34, 380
BtsIMutI	CAGTG	2 cut(s)	256, 454
CfoI	GCGC	1 cut(s)	497
Cfr10I	RCCGGY	1 cut(s)	283
CviAII	CATG	3 cut(s)	425, 435, 530
CviJI	RGCY	4 cut(s)	81, 283, 511, 540
CviKI_1	RGCY	4 cut(s)	81, 283, 511, 540
DdeI	CTNAG	1 cut(s)	521
DpnI	GATC	2 cut(s)	330, 339
DpnII	GATC	2 cut(s)	328, 337
EcoRII	CCWGG	1 cut(s)	370
Esp3I	CGTCTC	1 cut(s)	110
FaeI	CATG	3 cut(s)	428, 438, 533
FaiI	YATR	7 cut(s)	89, 179, 270, 426, 436, 440, 531
FatI	CATG	3 cut(s)	424, 434, 529
Fnu4HI	GCNGC	1 cut(s)	82
FokI	GGATG	3 cut(s)	21, 40, 387
Fsp4HI	GCNGC	1 cut(s)	82
GlaI	GCGC	1 cut(s)	496
GluI	GCNGC	1 cut(s)	82
HapII	CCGG	1 cut(s)	284
HhaI	GCGC	1 cut(s)	497
Hin1II	CATG	3 cut(s)	428, 438, 533
Hin6I	GCGC	1 cut(s)	495
HinP1I	GCGC	1 cut(s)	495
HinfI	GANTC	2 cut(s)	4, 443
HpaII	CCGG	1 cut(s)	284
HphI	GGTGA	1 cut(s)	251
Hpy188I	TCNGA	1 cut(s)	524
Hpy188III	TCNNGA	5 cut(s)	8, 38, 316, 388, 485
HpyAV	CCTTC	1 cut(s)	373
HpyCH4III	ACNGT	3 cut(s)	104, 251, 471
HpyCH4IV	ACGT	1 cut(s)	418
HpyCH4V	TGCA	1 cut(s)	434
HpyF10VI	GCNNNNNNNGC	1 cut(s)	517
HpyF3I	CTNAG	1 cut(s)	521
HpySE526I	ACGT	1 cut(s)	418
Hsp92II	CATG	3 cut(s)	428, 438, 533
HspAI	GCGC	1 cut(s)	495
Kzo9I	GATC	2 cut(s)	328, 337
Lsp1109I	GCAGC	1 cut(s)	68
MaeII	ACGT	1 cut(s)	418
MaeIII	GTNAC	3 cut(s)	222, 449, 460
MalI	GATC	2 cut(s)	330, 339
MboI	GATC	2 cut(s)	328, 337
MboII	GAAGA	1 cut(s)	562
MflI	RGATCY	1 cut(s)	337
MhlI	GDGCHC	1 cut(s)	300
MluCI	AATT	4 cut(s)	160, 170, 213, 258
MnlI	CCTC	1 cut(s)	352
MroXI	GAANNNNTTC	1 cut(s)	383
MseI	TTAA	1 cut(s)	542
MspI	CCGG	1 cut(s)	284
MspR9I	CCNGG	1 cut(s)	372
Mva1269I	GAATGC	1 cut(s)	351
MvaI	CCWGG	1 cut(s)	372
MvnI	CGCG	1 cut(s)	495
MwoI	GCNNNNNNNGC	1 cut(s)	517
NdeII	GATC	2 cut(s)	328, 337
NlaIII	CATG	3 cut(s)	428, 438, 533
NlaIV	GGNNCC	1 cut(s)	339
NmuCI	GTSAC	2 cut(s)	449, 460
NspI	RCATGY	1 cut(s)	438
PctI	GAATGC	1 cut(s)	351
PdmI	GAANNNNTTC	1 cut(s)	383
PfeI	GAWTC	2 cut(s)	4, 443
PkrI	GCNGC	1 cut(s)	83
Psp6I	CCWGG	1 cut(s)	370
PspGI	CCWGG	1 cut(s)	370
PspN4I	GGNNCC	1 cut(s)	339
PsuI	RGATCY	1 cut(s)	337
SaqAI	TTAA	1 cut(s)	542
SatI	GCNGC	1 cut(s)	82
Sau3AI	GATC	2 cut(s)	328, 337
ScrFI	CCNGG	1 cut(s)	372
SduI	GDGCHC	1 cut(s)	300
SetI	ASST	6 cut(s)	83, 116, 143, 373, 421, 504
SfcI	CTRYAG	1 cut(s)	109
Sse9I	AATT	4 cut(s)	160, 170, 213, 258
SsiI	CCGC	1 cut(s)	254
StyD4I	CCNGG	1 cut(s)	370
TaaI	ACNGT	3 cut(s)	104, 251, 471
TaiI	ACGT	1 cut(s)	421
TaqI	TCGA	2 cut(s)	47, 292
TaqII	GACCGA	1 cut(s)	279
TasI	AATT	4 cut(s)	160, 170, 213, 258
TfiI	GAWTC	2 cut(s)	4, 443
Tru1I	TTAA	1 cut(s)	542
Tru9I	TTAA	1 cut(s)	542
TscAI	CASTG	2 cut(s)	256, 454
TseFI	GTSAC	2 cut(s)	449, 460
TseI	GCWGC	1 cut(s)	81
Tsp45I	GTSAC	2 cut(s)	449, 460
TspDTI	ATGAA	5 cut(s)	77, 114, 285, 290, 413
TspGWI	ACGGA	1 cut(s)	40
TspRI	CASTG	2 cut(s)	256, 454
XapI	RAATTY	3 cut(s)	160, 170, 213
XceI	RCATGY	1 cut(s)	438
XmnI	GAANNNNTTC	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.