Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0021424

Physical Location & Seq

Genomic Coordinates Reverse (-)

92728242 .. 92731295

Gene Structure 3054 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG539100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGAGGTCTCGCCGGAAATTGCAGCAGTGAGGTTTTCGGTTGGAAGAAATAGATTCATCATTCCGTTCCAATCGATTCAAGAGCAAGAGAAAGAACGGATGCCTCATCCCGATATTTCAATTGAAATACCGATGAATGGTATTTTTCATAGCTGCCATATAGTTCCAGCAAACCGTCTCTACAGGTCTGGCGTTTCATTGCTTGATAATAGGTATTTGGGGATTGTGTTGAATTTGGAGAAAATTTTTATAGAGTGGAACAATAAGCAATCATTTGCTCTCAAAATTCAAGGGTTACGAAGTGTAGATGGTGATACTCACAGTGCGGAAATTGACCGATATGAAATGAATAAGTTGGTTATTCGAGTGCCCAACAGAAACATTGTCCTGACACGCATTGATCCAAAGGATCCCTCCACAAGCATTCTTGTAAGAGTTAGACCTGGATGGAAGGATTTCAGGAAGTATTTGGTTGGGAAAAACAGCAGACGTTTTCATGTGTTTGCATGTATGGAATCCAGTGACGACTTTGTGACAAAACTGTGGAGTGATGTTCTTGACCCACGTGCATACCTTGTAGAGCCTCATATGCTCAGATACCATGTTTTTGGCTTAACTCCCGATGGACAGTGCCCTCCAGGGATGACAGTTATTCTTGATGGGAAGAATAATGCCTGGAGGAACGAAGATAAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004647 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008420 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032870 GO:0032991 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070887 GO:0070940 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF dsrm

Protein Analysis

232

Amino Acids

26.83

Weight (kDa)

8.97

Isoelectric Point (pI)

51.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021424)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0083781
rosa_multiflora	Rmu_sc0003602.1_g000005
rosa_samantha	Rh5AG539100 Rh5BG564400 Rh5DG572800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	326
AclWI	GGATC	3 cut(s)	395, 404, 417
AcsI	RAATTY	3 cut(s)	232, 243, 285
AcvI	CACGTG	1 cut(s)	566
AfiI	CCNNNNNNNGG	1 cut(s)	137
AgsI	TTSAA	5 cut(s)	80, 120, 125, 232, 290
AjnI	CCWGG	3 cut(s)	442, 637, 674
AluBI	AGCT	2 cut(s)	153, 695
AluI	AGCT	2 cut(s)	153, 695
Alw26I	GTCTC	2 cut(s)	13, 182
AlwI	GGATC	3 cut(s)	395, 404, 417
ApeKI	GCWGC	2 cut(s)	23, 153
ApoI	RAATTY	3 cut(s)	232, 243, 285
Asp700I	GAANNNNTTC	1 cut(s)	455
AsuHPI	GGTGA	1 cut(s)	323
BaeGI	GKGCMC	2 cut(s)	372, 635
BamHI	GGATCC	1 cut(s)	409
BbrPI	CACGTG	1 cut(s)	566
BbvI	GCAGC	2 cut(s)	35, 140
BccI	CCATC	4 cut(s)	302, 441, 617, 653
BciT130I	CCWGG	3 cut(s)	444, 639, 676
BcoDI	GTCTC	2 cut(s)	13, 182
BfmI	CTRYAG	1 cut(s)	181
BisI	GCNGC	2 cut(s)	24, 154
BlsI	GCNGC	2 cut(s)	25, 155
Bme1390I	CCNGG	3 cut(s)	444, 639, 676
BmiI	GGNNCC	1 cut(s)	411
BmrFI	CCNGG	3 cut(s)	444, 639, 676
BmsI	GCATC	1 cut(s)	90
BpmI	CTGGAG	2 cut(s)	621, 697
Bsa29I	ATCGAT	1 cut(s)	74
BsaAI	YACGTR	1 cut(s)	566
BsaI	GGTCTC	1 cut(s)	13
BsaJI	CCNNGG	1 cut(s)	638
Bsc4I	CCNNNNNNNGG	1 cut(s)	137
Bse1I	ACTGG	1 cut(s)	519
Bse3DI	GCAATG	1 cut(s)	197
BseBI	CCWGG	3 cut(s)	444, 639, 676
BseCI	ATCGAT	1 cut(s)	74
BseDI	CCNNGG	1 cut(s)	638
BseGI	GGATG	4 cut(s)	105, 106, 452, 648
BseLI	CCNNNNNNNGG	1 cut(s)	137
BseMI	GCAATG	1 cut(s)	197
BseMII	CTCAG	1 cut(s)	607
BseNI	ACTGG	1 cut(s)	519
BseSI	GKGCMC	2 cut(s)	372, 635
BseXI	GCAGC	2 cut(s)	35, 140
BshVI	ATCGAT	1 cut(s)	74
BsiSI	CCGG	1 cut(s)	14
BslI	CCNNNNNNNGG	1 cut(s)	137
BsmAI	GTCTC	2 cut(s)	13, 182
BsmBI	CGTCTC	1 cut(s)	182
BsmI	GAATGC	1 cut(s)	423
Bso31I	GGTCTC	1 cut(s)	13
Bsp1286I	GDGCHC	2 cut(s)	372, 635
Bsp143I	GATC	2 cut(s)	400, 409
BspACI	CCGC	1 cut(s)	326
BspCNI	CTCAG	1 cut(s)	606
BspDI	ATCGAT	1 cut(s)	74
BspLI	GGNNCC	1 cut(s)	411
BspPI	GGATC	3 cut(s)	395, 404, 417
BspTNI	GGTCTC	1 cut(s)	13
BsrDI	GCAATG	1 cut(s)	197
BsrI	ACTGG	1 cut(s)	519
BssECI	CCNNGG	1 cut(s)	638
BssMI	GATC	2 cut(s)	400, 409
Bst2UI	CCWGG	3 cut(s)	444, 639, 676
Bst4CI	ACNGT	5 cut(s)	176, 323, 543, 630, 649
BstBAI	YACGTR	1 cut(s)	566
BstDEI	CTNAG	1 cut(s)	593
BstF5I	GGATG	4 cut(s)	105, 106, 452, 648
BstKTI	GATC	2 cut(s)	403, 412
BstMAI	GTCTC	2 cut(s)	13, 182
BstMBI	GATC	2 cut(s)	400, 409
BstMWI	GCNNNNNNNGC	1 cut(s)	589
BstNI	CCWGG	3 cut(s)	444, 639, 676
BstNSI	RCATGY	1 cut(s)	510
BstSCI	CCNGG	3 cut(s)	442, 637, 674
BstSFI	CTRYAG	1 cut(s)	181
BstSLI	GKGCMC	2 cut(s)	372, 635
BstV1I	GCAGC	2 cut(s)	35, 140
BstX2I	RGATCY	1 cut(s)	409
BstXI	CCANNNNNNTGG	1 cut(s)	608
BstYI	RGATCY	1 cut(s)	409
Bsu15I	ATCGAT	1 cut(s)	74
BsuTUI	ATCGAT	1 cut(s)	74
BtsCI	GGATG	4 cut(s)	105, 106, 452, 648
BtsI	GCAGTG	1 cut(s)	33
BtsIMutI	CAGTG	4 cut(s)	33, 328, 526, 635
ClaI	ATCGAT	1 cut(s)	74
CviAII	CATG	3 cut(s)	497, 507, 602
CviJI	RGCY	4 cut(s)	153, 583, 612, 695
CviKI_1	RGCY	4 cut(s)	153, 583, 612, 695
DdeI	CTNAG	1 cut(s)	593
DpnI	GATC	2 cut(s)	402, 411
DpnII	GATC	2 cut(s)	400, 409
Eco31I	GGTCTC	1 cut(s)	13
Eco72I	CACGTG	1 cut(s)	566
EcoRII	CCWGG	3 cut(s)	442, 637, 674
Esp3I	CGTCTC	1 cut(s)	182
FaeI	CATG	3 cut(s)	500, 510, 605
FatI	CATG	3 cut(s)	496, 506, 601
FauNDI	CATATG	1 cut(s)	588
Fnu4HI	GCNGC	2 cut(s)	24, 154
FokI	GGATG	4 cut(s)	93, 112, 459, 655
Fsp4HI	GCNGC	2 cut(s)	24, 154
GluI	GCNGC	2 cut(s)	24, 154
GsuI	CTGGAG	2 cut(s)	621, 697
HapII	CCGG	1 cut(s)	14
Hin1II	CATG	3 cut(s)	500, 510, 605
HindIII	AAGCTT	1 cut(s)	693
HinfI	GANTC	3 cut(s)	54, 76, 515
HpaII	CCGG	1 cut(s)	14
HphI	GGTGA	1 cut(s)	323
Hpy188I	TCNGA	1 cut(s)	596
Hpy188III	TCNNGA	7 cut(s)	80, 110, 388, 460, 557, 620, 656
HpyAV	CCTTC	1 cut(s)	445
HpyCH4III	ACNGT	5 cut(s)	176, 323, 543, 630, 649
HpyCH4IV	ACGT	2 cut(s)	490, 565
HpyCH4V	TGCA	3 cut(s)	23, 506, 569
HpyF10VI	GCNNNNNNNGC	1 cut(s)	589
HpyF3I	CTNAG	1 cut(s)	593
HpySE526I	ACGT	2 cut(s)	490, 565
Hsp92II	CATG	3 cut(s)	500, 510, 605
Kzo9I	GATC	2 cut(s)	400, 409
Lsp1109I	GCAGC	2 cut(s)	35, 140
LweI	GCATC	1 cut(s)	90
MaeII	ACGT	2 cut(s)	490, 565
MaeIII	GTNAC	3 cut(s)	294, 521, 532
MalI	GATC	2 cut(s)	402, 411
MboI	GATC	2 cut(s)	400, 409
MboII	GAAGA	3 cut(s)	57, 676, 698
MfeI	CAATTG	1 cut(s)	120
MflI	RGATCY	1 cut(s)	409
MhlI	GDGCHC	2 cut(s)	372, 635
MluCI	AATT	6 cut(s)	18, 120, 232, 243, 285, 330
MmeI	TCCRAC	1 cut(s)	22
MnlI	CCTC	6 cut(s)	24, 114, 424, 594, 645, 672
MroXI	GAANNNNTTC	1 cut(s)	455
MseI	TTAA	1 cut(s)	614
MspI	CCGG	1 cut(s)	14
MspR9I	CCNGG	3 cut(s)	444, 639, 676
MunI	CAATTG	1 cut(s)	120
Mva1269I	GAATGC	1 cut(s)	423
MvaI	CCWGG	3 cut(s)	444, 639, 676
MwoI	GCNNNNNNNGC	1 cut(s)	589
NdeI	CATATG	1 cut(s)	588
NdeII	GATC	2 cut(s)	400, 409
NlaIII	CATG	3 cut(s)	500, 510, 605
NlaIV	GGNNCC	1 cut(s)	411
NmuCI	GTSAC	2 cut(s)	521, 532
NspI	RCATGY	1 cut(s)	510
PctI	GAATGC	1 cut(s)	423
PdmI	GAANNNNTTC	1 cut(s)	455
PfeI	GAWTC	3 cut(s)	54, 76, 515
PkrI	GCNGC	2 cut(s)	25, 155
PmaCI	CACGTG	1 cut(s)	566
PmlI	CACGTG	1 cut(s)	566
Ppu21I	YACGTR	1 cut(s)	566
Psp6I	CCWGG	3 cut(s)	442, 637, 674
PspCI	CACGTG	1 cut(s)	566
PspGI	CCWGG	3 cut(s)	442, 637, 674
PspN4I	GGNNCC	1 cut(s)	411
PsuI	RGATCY	1 cut(s)	409
SaqAI	TTAA	1 cut(s)	614
SatI	GCNGC	2 cut(s)	24, 154
Sau3AI	GATC	2 cut(s)	400, 409
ScrFI	CCNGG	3 cut(s)	444, 639, 676
SduI	GDGCHC	2 cut(s)	372, 635
SfaNI	GCATC	1 cut(s)	90
SfcI	CTRYAG	1 cut(s)	181
Sse9I	AATT	6 cut(s)	18, 120, 232, 243, 285, 330
SsiI	CCGC	1 cut(s)	326
StyD4I	CCNGG	3 cut(s)	442, 637, 674
TaaI	ACNGT	5 cut(s)	176, 323, 543, 630, 649
TaiI	ACGT	2 cut(s)	493, 568
TaqI	TCGA	2 cut(s)	74, 364
TaqII	GACCGA	1 cut(s)	351
TasI	AATT	6 cut(s)	18, 120, 232, 243, 285, 330
TfiI	GAWTC	3 cut(s)	54, 76, 515
Tru1I	TTAA	1 cut(s)	614
Tru9I	TTAA	1 cut(s)	614
TscAI	CASTG	4 cut(s)	33, 328, 526, 635
TseFI	GTSAC	2 cut(s)	521, 532
TseI	GCWGC	2 cut(s)	23, 153
Tsp45I	GTSAC	2 cut(s)	521, 532
TspDTI	ATGAA	7 cut(s)	46, 137, 149, 186, 357, 362, 485
TspGWI	ACGGA	2 cut(s)	54, 112
TspRI	CASTG	4 cut(s)	33, 328, 526, 635
XapI	RAATTY	3 cut(s)	232, 243, 285
XceI	RCATGY	1 cut(s)	510
XmnI	GAANNNNTTC	1 cut(s)	455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.