Rh5DG572800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0021424
Physical Location & Seq
Forward (+)
87993891 .. 87994436
546 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG572800.1

Sequence Viewer

Length: 546 bp
ATGCCCCGTCTCGATATTTCGATTGAAATACCGATAAATGGTATATTTCGTAGCTGCTACATAGTTCCAGCAAACCGTCTCTACAGGTCTGGCGTTTCATTGCTTGATAATAGTTATTTGGGGATTGTGTTGAATTTGGAGAAAAATTTCATAGAGTGGAACGATAAGCAATCATTTGCTCTCAAAATTCAAGGGTTACGAAGTGTAGATGGTGATACTCACAGTGCGGAAATACAGGTTTCTGTAGAAAACCAAATGAACACGTCGGGCCCCAAATTCAACAACAGCGGTCTGCAGAAAACCAAGAAACTCATAAACAAGAAACTAGGGTTATTGATCACAGAATTGAAAATTGAAGGAAGAAAACCACATACCTTGAACTCTTTGAGGCAAGAATTGTACAGGTTCTGTAGTCTAGGTTGCACATATCCCCTAGATCCTTCAATTATGCCTACAAGATTATACGAAGAAATCACCCGCATTACTGAAAGCGGAGGGCATCATCTGCTTGATATCGATAGGGTTACGCTCTTCCCAGGAACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

181

Amino Acids

20.51

Weight (kDa)

8.76

Isoelectric Point (pI)

42.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021424)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0083781
rosa_multiflora Rmu_sc0003602.1_g000005
rosa_samantha Rh5AG539100 Rh5BG564400 Rh5DG572800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 227, 288, 478, 492
AclWI GGATC 1 cut(s) 431
AcsI RAATTY 4 cut(s) 133, 145, 186, 275
AfaI GTAC 1 cut(s) 401
AfiI CCNNNNNNNGG 1 cut(s) 38
AflIII ACRYGT 1 cut(s) 261
AgsI TTSAA 8 cut(s) 26, 133, 191, 280, 349, 356, 379, 444
AjiI CACGTC 1 cut(s) 264
AjnI CCWGG 1 cut(s) 535
AluBI AGCT 1 cut(s) 54
AluI AGCT 1 cut(s) 54
Alw26I GTCTC 2 cut(s) 14, 83
AlwI GGATC 1 cut(s) 431
AlwNI CAGNNNCTG 1 cut(s) 408
AoxI GGCC 1 cut(s) 268
ApaI GGGCCC 1 cut(s) 272
ApeKI GCWGC 1 cut(s) 54
ApoI RAATTY 4 cut(s) 133, 145, 186, 275
Asp700I GAANNNNTTC 1 cut(s) 146
AspS9I GGNCC 2 cut(s) 268, 269
AsuHPI GGTGA 2 cut(s) 224, 466
BaeGI GKGCMC 1 cut(s) 272
BanII GRGCYC 1 cut(s) 272
BbvI GCAGC 1 cut(s) 41
BccI CCATC 1 cut(s) 203
BciT130I CCWGG 1 cut(s) 537
BclI TGATCA 1 cut(s) 336
BcoDI GTCTC 2 cut(s) 14, 83
BfaI CTAG 3 cut(s) 326, 416, 434
BfmI CTRYAG 4 cut(s) 82, 243, 293, 409
BisI GCNGC 1 cut(s) 55
BlsI GCNGC 1 cut(s) 56
Bme1390I CCNGG 1 cut(s) 537
BmgBI CACGTC 1 cut(s) 264
BmgT120I GGNCC 2 cut(s) 268, 269
BmiI GGNNCC 3 cut(s) 270, 271, 541
BmrFI CCNGG 1 cut(s) 537
BmsI GCATC 1 cut(s) 508
Bsa29I ATCGAT 1 cut(s) 516
BsaJI CCNNGG 1 cut(s) 535
Bsc4I CCNNNNNNNGG 1 cut(s) 38
Bse3DI GCAATG 1 cut(s) 98
BseBI CCWGG 1 cut(s) 537
BseCI ATCGAT 1 cut(s) 516
BseDI CCNNGG 1 cut(s) 535
BseLI CCNNNNNNNGG 1 cut(s) 38
BseMI GCAATG 1 cut(s) 98
BseSI GKGCMC 1 cut(s) 272
BseXI GCAGC 1 cut(s) 41
BshFI GGCC 1 cut(s) 270
BshVI ATCGAT 1 cut(s) 516
BslI CCNNNNNNNGG 1 cut(s) 38
BsmAI GTCTC 2 cut(s) 14, 83
BsmBI CGTCTC 2 cut(s) 14, 83
BsnI GGCC 1 cut(s) 270
Bsp120I GGGCCC 1 cut(s) 268
Bsp1286I GDGCHC 1 cut(s) 272
Bsp1407I TGTACA 1 cut(s) 399
Bsp143I GATC 2 cut(s) 336, 436
BspACI CCGC 4 cut(s) 227, 288, 478, 492
BspANI GGCC 1 cut(s) 270
BspDI ATCGAT 1 cut(s) 516
BspLI GGNNCC 3 cut(s) 270, 271, 541
BspMAI CTGCAG 1 cut(s) 297
BspPI GGATC 1 cut(s) 431
BspQI GCTCTTC 1 cut(s) 536
BsrDI GCAATG 1 cut(s) 98
BsrGI TGTACA 1 cut(s) 399
BssECI CCNNGG 1 cut(s) 535
BssMI GATC 2 cut(s) 336, 436
Bst2UI CCWGG 1 cut(s) 537
Bst4CI ACNGT 2 cut(s) 77, 224
Bst6I CTCTTC 1 cut(s) 536
BstAPI GCANNNNNTGC 1 cut(s) 505
BstAUI TGTACA 1 cut(s) 399
BstKTI GATC 2 cut(s) 339, 439
BstMAI GTCTC 2 cut(s) 14, 83
BstMBI GATC 2 cut(s) 336, 436
BstMWI GCNNNNNNNGC 1 cut(s) 505
BstNI CCWGG 1 cut(s) 537
BstSCI CCNGG 1 cut(s) 535
BstSFI CTRYAG 4 cut(s) 82, 243, 293, 409
BstSLI GKGCMC 1 cut(s) 272
BstV1I GCAGC 1 cut(s) 41
BstX2I RGATCY 1 cut(s) 436
BstYI RGATCY 1 cut(s) 436
Bsu15I ATCGAT 1 cut(s) 516
BsuRI GGCC 1 cut(s) 270
BsuTUI ATCGAT 1 cut(s) 516
BtrI CACGTC 1 cut(s) 264
BtsIMutI CAGTG 1 cut(s) 229
CaiI CAGNNNCTG 1 cut(s) 408
Cfr13I GGNCC 2 cut(s) 268, 269
ClaI ATCGAT 1 cut(s) 516
Csp6I GTAC 1 cut(s) 400
CspCI CAANNNNNGTGG 2 cut(s) 357, 392
CviJI RGCY 2 cut(s) 54, 270
CviKI_1 RGCY 2 cut(s) 54, 270
CviQI GTAC 1 cut(s) 400
DpnI GATC 2 cut(s) 338, 438
DpnII GATC 2 cut(s) 336, 436
Eam1104I CTCTTC 1 cut(s) 536
EarI CTCTTC 1 cut(s) 536
Eco24I GRGCYC 1 cut(s) 272
Eco32I GATATC 1 cut(s) 514
EcoO109I RGGNCCY 1 cut(s) 269
EcoRII CCWGG 1 cut(s) 535
EcoRV GATATC 1 cut(s) 514
EcoT38I GRGCYC 1 cut(s) 272
Esp3I CGTCTC 2 cut(s) 14, 83
FaiI YATR 8 cut(s) 44, 62, 152, 314, 372, 427, 449, 463
FauI CCCGC 1 cut(s) 485
FbaI TGATCA 1 cut(s) 336
Fnu4HI GCNGC 1 cut(s) 55
FriOI GRGCYC 1 cut(s) 272
Fsp4HI GCNGC 1 cut(s) 55
FspBI CTAG 3 cut(s) 326, 416, 434
GluI GCNGC 1 cut(s) 55
HaeIII GGCC 1 cut(s) 270
HphI GGTGA 2 cut(s) 224, 466
Hpy188III TCNNGA 1 cut(s) 11
Hpy99I CGWCG 1 cut(s) 268
HpyAV CCTTC 2 cut(s) 350, 450
HpyCH4III ACNGT 2 cut(s) 77, 224
HpyCH4IV ACGT 1 cut(s) 263
HpyCH4V TGCA 2 cut(s) 295, 423
HpyF10VI GCNNNNNNNGC 1 cut(s) 505
HpySE526I ACGT 1 cut(s) 263
Ksp22I TGATCA 1 cut(s) 336
Kzo9I GATC 2 cut(s) 336, 436
LguI GCTCTTC 1 cut(s) 536
LpnPI CCDG 6 cut(s) 70, 75, 81, 221, 388, 522
Lsp1109I GCAGC 1 cut(s) 41
LweI GCATC 1 cut(s) 508
MaeI CTAG 3 cut(s) 326, 416, 434
MaeII ACGT 1 cut(s) 263
MaeIII GTNAC 2 cut(s) 195, 523
MalI GATC 2 cut(s) 338, 438
MboI GATC 2 cut(s) 336, 436
MboII GAAGA 3 cut(s) 372, 479, 523
MflI RGATCY 1 cut(s) 436
MhlI GDGCHC 1 cut(s) 272
MluCI AATT 8 cut(s) 133, 145, 186, 275, 344, 351, 395, 444
MnlI CCTC 2 cut(s) 381, 488
MroXI GAANNNNTTC 1 cut(s) 146
MspA1I CMGCKG 1 cut(s) 288
MspR9I CCNGG 1 cut(s) 537
MvaI CCWGG 1 cut(s) 537
MwoI GCNNNNNNNGC 1 cut(s) 505
NdeII GATC 2 cut(s) 336, 436
NlaIV GGNNCC 3 cut(s) 270, 271, 541
PciSI GCTCTTC 1 cut(s) 536
PdmI GAANNNNTTC 1 cut(s) 146
PkrI GCNGC 1 cut(s) 56
Psp6I CCWGG 1 cut(s) 535
PspGI CCWGG 1 cut(s) 535
PspN4I GGNNCC 3 cut(s) 270, 271, 541
PspOMI GGGCCC 1 cut(s) 268
PspPI GGNCC 2 cut(s) 268, 269
PstI CTGCAG 1 cut(s) 297
PstNI CAGNNNCTG 1 cut(s) 408
PsuI RGATCY 1 cut(s) 436
RsaI GTAC 1 cut(s) 401
RsaNI GTAC 1 cut(s) 400
SapI GCTCTTC 1 cut(s) 536
SatI GCNGC 1 cut(s) 55
Sau3AI GATC 2 cut(s) 336, 436
Sau96I GGNCC 2 cut(s) 268, 269
ScrFI CCNGG 1 cut(s) 537
SduI GDGCHC 1 cut(s) 272
SetI ASST 8 cut(s) 56, 89, 240, 266, 377, 407, 421, 545
SfaNI GCATC 1 cut(s) 508
SfcI CTRYAG 4 cut(s) 82, 243, 293, 409
Sse9I AATT 8 cut(s) 133, 145, 186, 275, 344, 351, 395, 444
SsiI CCGC 4 cut(s) 227, 288, 478, 492
SspMI CTAG 3 cut(s) 326, 416, 434
StyD4I CCNGG 1 cut(s) 535
TaaI ACNGT 2 cut(s) 77, 224
TaiI ACGT 1 cut(s) 266
TaqI TCGA 3 cut(s) 12, 20, 516
TasI AATT 8 cut(s) 133, 145, 186, 275, 344, 351, 395, 444
TatI WGTACW 1 cut(s) 399
TscAI CASTG 1 cut(s) 229
TseI GCWGC 1 cut(s) 54
TspDTI ATGAA 3 cut(s) 87, 139, 272
TspRI CASTG 1 cut(s) 229
XapI RAATTY 4 cut(s) 133, 145, 186, 275
XmnI GAANNNNTTC 1 cut(s) 146
XspI CTAG 3 cut(s) 326, 416, 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.