RchiOBHm_Chr4g0396821

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0017282
Physical Location & Seq
Reverse (-)
12906583 .. 12907095
513 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 417 bp
ATGTTTGGCAATTGCAGCCGCATGATGCTAATCCATGTGATCATCTTCTCCTTCACCATTTCCATCAGTTCTTCATCTCCAGCAAGACTCTCCGACAGTGGCCAACTTCCGGTGCTTAATTTCATTAATGGGTTGCCGAAAAACTCAGAGCCATGGGAGCTCAGATGCGGTAATCAGAGCACTAACGAACACCATGCGTATTTGAAAACTGGTGCAGAGGACCAATGGAGGATCGAGAAGAACGTTGGTTACAGCTGCGATACACTGTGGGGAACTCAGTTTGCATACTGGAAAGTTTATCAGCCTGGTGAAGACTCCGGCAAAGCCACAGTGTTCTGGTTGGCTAAAGACGATGGTTTTTATCGCAGCTGGGATAAATCTACATGGACAAGAGAGTTTGAATGGGAACATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

138

Amino Acids

16.03

Weight (kDa)

5.54

Isoelectric Point (pI)

33.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 40 - 135 5.1e-09 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017282)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g05643
rosa_chinensis RchiOBHm_Chr4g0396821
rosa_laevigata RLG00000009502
rosa_multiflora Rmu_sc0000487.1_g000053
rosa_roxburghii Rroxscaffold_5G00341660
rosa_rugosa Rorug03G0347500
rosa_samantha Rh4AG072000 Rh4AG072800 Rh4AG074900 Rh4BG069900 Rh4CG078200 Rh4DG067700
rosa_wichuraiana Rw4G005910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 19, 168
AclI AACGTT 1 cut(s) 243
AclWI GGATC 1 cut(s) 239
AcoI YGGCCR 1 cut(s) 100
AfiI CCNNNNNNNGG 1 cut(s) 109
AgsI TTSAA 2 cut(s) 205, 401
AjnI CCWGG 1 cut(s) 304
AluBI AGCT 3 cut(s) 160, 255, 369
AluI AGCT 3 cut(s) 160, 255, 369
Alw21I GWGCWC 2 cut(s) 162, 182
AlwI GGATC 1 cut(s) 239
AoxI GGCC 1 cut(s) 100
ApeKI GCWGC 3 cut(s) 15, 255, 366
AseI ATTAAT 1 cut(s) 126
AspS9I GGNCC 1 cut(s) 220
AsuHPI GGTGA 2 cut(s) 46, 320
AvaII GGWCC 1 cut(s) 220
BalI TGGCCA 1 cut(s) 102
BanII GRGCYC 1 cut(s) 162
BbsI GAAGAC 1 cut(s) 318
Bbv12I GWGCWC 2 cut(s) 162, 182
BbvI GCAGC 3 cut(s) 27, 242, 378
BccI CCATC 2 cut(s) 71, 347
BcgI CGANNNNNNTGC 2 cut(s) 176, 210
BciT130I CCWGG 1 cut(s) 306
BclI TGATCA 1 cut(s) 39
BisI GCNGC 4 cut(s) 16, 19, 256, 367
BlsI GCNGC 4 cut(s) 17, 20, 257, 368
Bme1390I CCNGG 1 cut(s) 306
Bme18I GGWCC 1 cut(s) 220
BmgT120I GGNCC 1 cut(s) 220
BmrFI CCNGG 1 cut(s) 306
BmsI GCATC 2 cut(s) 15, 155
BpiI GAAGAC 1 cut(s) 318
BpmI CTGGAG 1 cut(s) 63
BsaBI GATNNNNATC 1 cut(s) 29
BsaJI CCNNGG 1 cut(s) 152
BsaWI WCCGGW 1 cut(s) 109
Bsc4I CCNNNNNNNGG 1 cut(s) 109
Bse1I ACTGG 2 cut(s) 214, 293
Bse8I GATNNNNATC 1 cut(s) 29
BseBI CCWGG 1 cut(s) 306
BseDI CCNNGG 1 cut(s) 152
BseJI GATNNNNATC 1 cut(s) 29
BseLI CCNNNNNNNGG 1 cut(s) 109
BseMII CTCAG 3 cut(s) 159, 175, 290
BseNI ACTGG 2 cut(s) 214, 293
BseXI GCAGC 3 cut(s) 27, 242, 378
BseYI CCCAGC 1 cut(s) 369
BsgI GTGCAG 1 cut(s) 234
BshFI GGCC 1 cut(s) 102
BsiHKAI GWGCWC 2 cut(s) 162, 182
BsiSI CCGG 2 cut(s) 110, 318
BslI CCNNNNNNNGG 1 cut(s) 109
BsnI GGCC 1 cut(s) 102
Bsp1286I GDGCHC 2 cut(s) 162, 182
Bsp143I GATC 2 cut(s) 39, 231
Bsp19I CCATGG 1 cut(s) 152
BspACI CCGC 2 cut(s) 19, 168
BspANI GGCC 1 cut(s) 102
BspCNI CTCAG 3 cut(s) 158, 174, 289
BspPI GGATC 1 cut(s) 239
BsrI ACTGG 2 cut(s) 214, 293
BssECI CCNNGG 1 cut(s) 152
BssMI GATC 2 cut(s) 39, 231
BssT1I CCWWGG 1 cut(s) 152
Bst2UI CCWGG 1 cut(s) 306
Bst4CI ACNGT 3 cut(s) 98, 267, 331
BstDEI CTNAG 3 cut(s) 145, 161, 276
BstDSI CCRYGG 1 cut(s) 152
BstKTI GATC 2 cut(s) 42, 234
BstMBI GATC 2 cut(s) 39, 231
BstMWI GCNNNNNNNGC 2 cut(s) 15, 157
BstNI CCWGG 1 cut(s) 306
BstSCI CCNGG 1 cut(s) 304
BstV1I GCAGC 3 cut(s) 27, 242, 378
BstV2I GAAGAC 1 cut(s) 318
BsuRI GGCC 1 cut(s) 102
BtgI CCRYGG 1 cut(s) 152
BtsIMutI CAGTG 3 cut(s) 103, 263, 336
Cfr13I GGNCC 1 cut(s) 220
CviAII CATG 6 cut(s) 22, 35, 153, 194, 384, 410
CviJI RGCY 9 cut(s) 18, 102, 151, 160, 255, 304, 326, 344, 369
CviKI_1 RGCY 9 cut(s) 18, 102, 151, 160, 255, 304, 326, 344, 369
DdeI CTNAG 3 cut(s) 145, 161, 276
DpnI GATC 2 cut(s) 41, 233
DpnII GATC 2 cut(s) 39, 231
EaeI YGGCCR 1 cut(s) 100
Ecl136II GAGCTC 1 cut(s) 160
Eco130I CCWWGG 1 cut(s) 152
Eco24I GRGCYC 1 cut(s) 162
Eco47I GGWCC 1 cut(s) 220
Eco53kI GAGCTC 1 cut(s) 160
EcoICRI GAGCTC 1 cut(s) 160
EcoRII CCWGG 1 cut(s) 304
EcoT14I CCWWGG 1 cut(s) 152
EcoT38I GRGCYC 1 cut(s) 162
ErhI CCWWGG 1 cut(s) 152
FaeI CATG 6 cut(s) 25, 38, 156, 197, 387, 413
FaiI YATR 7 cut(s) 23, 36, 154, 195, 286, 385, 411
FatI CATG 6 cut(s) 21, 34, 152, 193, 383, 409
FbaI TGATCA 1 cut(s) 39
Fnu4HI GCNGC 4 cut(s) 16, 19, 256, 367
FriOI GRGCYC 1 cut(s) 162
Fsp4HI GCNGC 4 cut(s) 16, 19, 256, 367
GluI GCNGC 4 cut(s) 16, 19, 256, 367
GsaI CCCAGC 1 cut(s) 373
GsuI CTGGAG 1 cut(s) 63
HaeIII GGCC 1 cut(s) 102
HapII CCGG 2 cut(s) 110, 318
Hin1II CATG 6 cut(s) 25, 38, 156, 197, 387, 413
HinfI GANTC 2 cut(s) 87, 314
HpaII CCGG 2 cut(s) 110, 318
HphI GGTGA 2 cut(s) 46, 320
Hpy188I TCNGA 4 cut(s) 94, 148, 164, 177
Hpy188III TCNNGA 1 cut(s) 235
HpyAV CCTTC 1 cut(s) 61
HpyCH4III ACNGT 3 cut(s) 98, 267, 331
HpyCH4IV ACGT 1 cut(s) 243
HpyCH4V TGCA 3 cut(s) 15, 215, 284
HpyF10VI GCNNNNNNNGC 2 cut(s) 15, 157
HpyF3I CTNAG 3 cut(s) 145, 161, 276
HpySE526I ACGT 1 cut(s) 243
Hsp92II CATG 6 cut(s) 25, 38, 156, 197, 387, 413
Ksp22I TGATCA 1 cut(s) 39
Kzo9I GATC 2 cut(s) 39, 231
LmnI GCTCC 1 cut(s) 157
LpnPI CCDG 9 cut(s) 93, 123, 195, 274, 291, 318, 322, 331, 355
Lsp1109I GCAGC 3 cut(s) 27, 242, 378
LweI GCATC 2 cut(s) 15, 155
MaeII ACGT 1 cut(s) 243
MaeIII GTNAC 1 cut(s) 248
MalI GATC 2 cut(s) 41, 233
MboI GATC 2 cut(s) 39, 231
MboII GAAGA 4 cut(s) 37, 63, 250, 323
MfeI CAATTG 1 cut(s) 10
MhlI GDGCHC 2 cut(s) 162, 182
MlsI TGGCCA 1 cut(s) 102
MluCI AATT 2 cut(s) 10, 118
MluNI TGGCCA 1 cut(s) 102
MlyI GAGTC 2 cut(s) 81, 308
MmeI TCCRAC 1 cut(s) 117
MnlI CCTC 2 cut(s) 211, 222
Mox20I TGGCCA 1 cut(s) 102
MscI TGGCCA 1 cut(s) 102
MseI TTAA 2 cut(s) 117, 126
Msp20I TGGCCA 1 cut(s) 102
MspA1I CMGCKG 2 cut(s) 255, 369
MspI CCGG 2 cut(s) 110, 318
MspR9I CCNGG 1 cut(s) 306
MunI CAATTG 1 cut(s) 10
MvaI CCWGG 1 cut(s) 306
MwoI GCNNNNNNNGC 2 cut(s) 15, 157
NcoI CCATGG 1 cut(s) 152
NdeII GATC 2 cut(s) 39, 231
NlaIII CATG 6 cut(s) 25, 38, 156, 197, 387, 413
PcsI WCGNNNNNNNCGW 1 cut(s) 240
PkrI GCNGC 4 cut(s) 17, 20, 257, 368
PleI GAGTC 2 cut(s) 81, 308
PpsI GAGTC 2 cut(s) 81, 308
PshBI ATTAAT 1 cut(s) 126
Psp124BI GAGCTC 1 cut(s) 162
Psp1406I AACGTT 1 cut(s) 243
Psp6I CCWGG 1 cut(s) 304
PspFI CCCAGC 1 cut(s) 369
PspGI CCWGG 1 cut(s) 304
PspPI GGNCC 1 cut(s) 220
PsrI GAACNNNNNNTAC 2 cut(s) 233, 265
PvuII CAGCTG 2 cut(s) 255, 369
SacI GAGCTC 1 cut(s) 162
SaqAI TTAA 2 cut(s) 117, 126
SatI GCNGC 4 cut(s) 16, 19, 256, 367
Sau3AI GATC 2 cut(s) 39, 231
Sau96I GGNCC 1 cut(s) 220
SchI GAGTC 2 cut(s) 81, 308
ScrFI CCNGG 1 cut(s) 306
SduI GDGCHC 2 cut(s) 162, 182
SetI ASST 4 cut(s) 162, 246, 257, 371
SfaNI GCATC 2 cut(s) 15, 155
SinI GGWCC 1 cut(s) 220
Sse9I AATT 2 cut(s) 10, 118
SsiI CCGC 2 cut(s) 19, 168
SstI GAGCTC 1 cut(s) 162
StyD4I CCNGG 1 cut(s) 304
StyI CCWWGG 1 cut(s) 152
TaaI ACNGT 3 cut(s) 98, 267, 331
TaiI ACGT 1 cut(s) 246
TaqI TCGA 1 cut(s) 234
TasI AATT 2 cut(s) 10, 118
TauI GCSGC 1 cut(s) 21
Tru1I TTAA 2 cut(s) 117, 126
Tru9I TTAA 2 cut(s) 117, 126
TscAI CASTG 3 cut(s) 103, 270, 336
TseI GCWGC 3 cut(s) 15, 255, 366
TspDTI ATGAA 2 cut(s) 63, 112
TspRI CASTG 3 cut(s) 103, 270, 336
VpaK11BI GGWCC 1 cut(s) 220
VspI ATTAAT 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.