RchiOBHm_Chr4g0398161

BRCA1-A complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0019004
Physical Location & Seq
Reverse (-)
14593667 .. 14594700
1034 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 426 bp
ATGATTGTTTTAATTCCTTCAACTTTTCTTCAGGGAATTGAGATGCACTTGAGTTCTGGATATGATAGGTGCATGGCTGAATATCTCCCCCCTCTTGAAGAGACTCTTGAAAAACAGGTTTTGGAGGCAGTTTCCTTAATTGATGTTAGAAGGCGCTTTATTGAGGCATTAGCCGTTCAGTTTGGAAGACCAGTGGAAGCTGATCCGATCTTTTGCAGAAAGGCAACGTTTCTAGCTGCTTCTGGAGTTTTCACATTTCTGGTTCATTTAACAATTACAACTCAGTTTCCAAAGCAACCGCCAGCTATAGTGCTTCAAAGTTCCCAGGCAAGGATATTCTCCTCCCAACCTGTAGATTATTTAGTATCATTGTCAAACCTTAGATATATAGGTAGTCAGTGTTGTCTGCTTCAGACCAAAGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
BRE

Protein Analysis

141

Amino Acids

15.77

Weight (kDa)

6.71

Isoelectric Point (pI)

68.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BRE PF06113 23 - 107 1.1e-10 Brain and reproductive organ-expressed protein (BRE)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019004)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0398161
rosa_multiflora Rmu_sc0001648.1_g000015 Rmu_sc0007363.1_g000001 Rmu_sc0033997.1_g000001
rosa_roxburghii Rroxscaffold_7G00217570
rosa_samantha Rh2CG310100 Rh2DG349500 Rh6BG254800
rosa_wichuraiana Rw7G033100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 299
AclI AACGTT 1 cut(s) 227
AclWI GGATC 1 cut(s) 197
AcuI CTGAAG 2 cut(s) 14, 395
AfiI CCNNNNNNNGG 1 cut(s) 330
AgsI TTSAA 4 cut(s) 21, 98, 110, 317
AjnI CCWGG 1 cut(s) 324
AluBI AGCT 3 cut(s) 200, 236, 305
AluI AGCT 3 cut(s) 200, 236, 305
Alw26I GTCTC 1 cut(s) 95
AlwI GGATC 1 cut(s) 197
ApeKI GCWGC 1 cut(s) 236
AspLEI GCGC 1 cut(s) 156
BbsI GAAGAC 1 cut(s) 193
BbvI GCAGC 1 cut(s) 223
BceAI ACGGC 1 cut(s) 158
BciT130I CCWGG 1 cut(s) 326
BcoDI GTCTC 1 cut(s) 95
BfaI CTAG 1 cut(s) 233
BfmI CTRYAG 2 cut(s) 306, 351
BfoI RGCGCY 1 cut(s) 157
BisI GCNGC 1 cut(s) 237
BlsI GCNGC 1 cut(s) 238
Bme1390I CCNGG 1 cut(s) 326
BmrFI CCNGG 1 cut(s) 326
BmsI GCATC 1 cut(s) 33
BpiI GAAGAC 1 cut(s) 193
BpmI CTGGAG 1 cut(s) 264
BpuEI CTTGAG 1 cut(s) 70
BsaJI CCNNGG 1 cut(s) 324
Bsc4I CCNNNNNNNGG 1 cut(s) 330
Bse1I ACTGG 1 cut(s) 191
BseBI CCWGG 1 cut(s) 326
BseDI CCNNGG 1 cut(s) 324
BseLI CCNNNNNNNGG 1 cut(s) 330
BseMII CTCAG 1 cut(s) 296
BseNI ACTGG 1 cut(s) 191
BseRI GAGGAG 1 cut(s) 331
BseXI GCAGC 1 cut(s) 223
BslI CCNNNNNNNGG 1 cut(s) 330
BsmAI GTCTC 1 cut(s) 95
Bsp143I GATC 2 cut(s) 202, 207
BspACI CCGC 1 cut(s) 299
BspCNI CTCAG 1 cut(s) 295
BspPI GGATC 1 cut(s) 197
BsrI ACTGG 1 cut(s) 191
BssECI CCNNGG 1 cut(s) 324
BssMI GATC 2 cut(s) 202, 207
Bst2UI CCWGG 1 cut(s) 326
Bst6I CTCTTC 1 cut(s) 93
BstC8I GCNNGC 1 cut(s) 303
BstDEI CTNAG 2 cut(s) 282, 380
BstH2I RGCGCY 1 cut(s) 157
BstHHI GCGC 1 cut(s) 156
BstKTI GATC 2 cut(s) 205, 210
BstMAI GTCTC 1 cut(s) 95
BstMBI GATC 2 cut(s) 202, 207
BstNI CCWGG 1 cut(s) 326
BstSCI CCNGG 1 cut(s) 324
BstSFI CTRYAG 2 cut(s) 306, 351
BstV1I GCAGC 1 cut(s) 223
BstV2I GAAGAC 1 cut(s) 193
BtsIMutI CAGTG 2 cut(s) 198, 404
Cac8I GCNNGC 1 cut(s) 303
CfoI GCGC 1 cut(s) 156
CviAII CATG 1 cut(s) 73
CviJI RGCY 5 cut(s) 77, 173, 200, 236, 305
CviKI_1 RGCY 5 cut(s) 77, 173, 200, 236, 305
DdeI CTNAG 2 cut(s) 282, 380
DpnI GATC 2 cut(s) 204, 209
DpnII GATC 2 cut(s) 202, 207
Eam1104I CTCTTC 1 cut(s) 93
EarI CTCTTC 1 cut(s) 93
Eco57I CTGAAG 2 cut(s) 14, 395
EcoRII CCWGG 1 cut(s) 324
FaeI CATG 1 cut(s) 76
FaiI YATR 5 cut(s) 63, 74, 308, 387, 389
FalI AAGNNNNNCTT 2 cut(s) 90, 122
FatI CATG 1 cut(s) 72
Fnu4HI GCNGC 1 cut(s) 237
Fsp4HI GCNGC 1 cut(s) 237
FspBI CTAG 1 cut(s) 233
GlaI GCGC 1 cut(s) 155
GluI GCNGC 1 cut(s) 237
GsuI CTGGAG 1 cut(s) 264
HaeII RGCGCY 1 cut(s) 157
HhaI GCGC 1 cut(s) 156
Hin1II CATG 1 cut(s) 76
Hin6I GCGC 1 cut(s) 154
HinP1I GCGC 1 cut(s) 154
HinfI GANTC 1 cut(s) 103
Hpy188I TCNGA 2 cut(s) 207, 414
Hpy188III TCNNGA 4 cut(s) 57, 95, 107, 243
HpyAV CCTTC 2 cut(s) 27, 144
HpyCH4IV ACGT 1 cut(s) 227
HpyCH4V TGCA 3 cut(s) 46, 72, 216
HpyF3I CTNAG 2 cut(s) 282, 380
HpySE526I ACGT 1 cut(s) 227
Hsp92II CATG 1 cut(s) 76
HspAI GCGC 1 cut(s) 154
Kzo9I GATC 2 cut(s) 202, 207
Lsp1109I GCAGC 1 cut(s) 223
LweI GCATC 1 cut(s) 33
MaeI CTAG 1 cut(s) 233
MaeII ACGT 1 cut(s) 227
MalI GATC 2 cut(s) 204, 209
MboI GATC 2 cut(s) 202, 207
MboII GAAGA 3 cut(s) 20, 110, 198
MluCI AATT 4 cut(s) 12, 36, 138, 273
MlyI GAGTC 1 cut(s) 97
MnlI CCTC 4 cut(s) 102, 118, 157, 352
MseI TTAA 4 cut(s) 11, 137, 269, 424
MspR9I CCNGG 1 cut(s) 326
MvaI CCWGG 1 cut(s) 326
NdeII GATC 2 cut(s) 202, 207
NlaIII CATG 1 cut(s) 76
PkrI GCNGC 1 cut(s) 238
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
Psp1406I AACGTT 1 cut(s) 227
Psp6I CCWGG 1 cut(s) 324
PspGI CCWGG 1 cut(s) 324
SaqAI TTAA 4 cut(s) 11, 137, 269, 424
SatI GCNGC 1 cut(s) 237
Sau3AI GATC 2 cut(s) 202, 207
SchI GAGTC 1 cut(s) 97
ScrFI CCNGG 1 cut(s) 326
SfaNI GCATC 1 cut(s) 33
SfcI CTRYAG 2 cut(s) 306, 351
SmlI CTYRAG 1 cut(s) 49
SmoI CTYRAG 1 cut(s) 49
Sse9I AATT 4 cut(s) 12, 36, 138, 273
SsiI CCGC 1 cut(s) 299
SspMI CTAG 1 cut(s) 233
StyD4I CCNGG 1 cut(s) 324
TaiI ACGT 1 cut(s) 230
TasI AATT 4 cut(s) 12, 36, 138, 273
Tru1I TTAA 4 cut(s) 11, 137, 269, 424
Tru9I TTAA 4 cut(s) 11, 137, 269, 424
TscAI CASTG 2 cut(s) 198, 404
TseI GCWGC 1 cut(s) 236
TspDTI ATGAA 1 cut(s) 254
TspRI CASTG 2 cut(s) 198, 404
XspI CTAG 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.