BRCA1-A complex subunit
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr4g0398161 |
| rosa_multiflora | Rmu_sc0001648.1_g000015 Rmu_sc0007363.1_g000001 Rmu_sc0033997.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00217570 |
| rosa_samantha | Rh2CG310100 Rh2DG349500 Rh6BG254800 |
| rosa_wichuraiana | Rw7G033100 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 164 |
| AcuI | CTGAAG | 1 cut(s) | 128 |
| AfaI | GTAC | 1 cut(s) | 288 |
| AgsI | TTSAA | 2 cut(s) | 65, 77 |
| AjnI | CCWGG | 1 cut(s) | 225 |
| AluBI | AGCT | 2 cut(s) | 167, 203 |
| AluI | AGCT | 2 cut(s) | 167, 203 |
| Alw26I | GTCTC | 1 cut(s) | 125 |
| AlwI | GGATC | 1 cut(s) | 164 |
| AoxI | GGCC | 1 cut(s) | 292 |
| ApeKI | GCWGC | 1 cut(s) | 203 |
| AspLEI | GCGC | 1 cut(s) | 123 |
| AspS9I | GGNCC | 1 cut(s) | 292 |
| BbsI | GAAGAC | 1 cut(s) | 160 |
| BbvI | GCAGC | 1 cut(s) | 190 |
| BciT130I | CCWGG | 1 cut(s) | 227 |
| BcoDI | GTCTC | 1 cut(s) | 125 |
| BfaI | CTAG | 1 cut(s) | 200 |
| BfoI | RGCGCY | 1 cut(s) | 124 |
| BisI | GCNGC | 1 cut(s) | 204 |
| BlsI | GCNGC | 1 cut(s) | 205 |
| Bme1390I | CCNGG | 1 cut(s) | 227 |
| BmgT120I | GGNCC | 1 cut(s) | 292 |
| BmrFI | CCNGG | 1 cut(s) | 227 |
| BmrI | ACTGGG | 1 cut(s) | 299 |
| BmsI | GCATC | 1 cut(s) | 257 |
| BmuI | ACTGGG | 1 cut(s) | 299 |
| BpiI | GAAGAC | 1 cut(s) | 160 |
| BpmI | CTGGAG | 1 cut(s) | 231 |
| Bse1I | ACTGG | 2 cut(s) | 158, 294 |
| BseBI | CCWGG | 1 cut(s) | 227 |
| BseNI | ACTGG | 2 cut(s) | 158, 294 |
| BseXI | GCAGC | 1 cut(s) | 190 |
| BshFI | GGCC | 1 cut(s) | 294 |
| BsmAI | GTCTC | 1 cut(s) | 125 |
| BsnI | GGCC | 1 cut(s) | 294 |
| Bsp143I | GATC | 3 cut(s) | 3, 169, 174 |
| BspANI | GGCC | 1 cut(s) | 294 |
| BspPI | GGATC | 1 cut(s) | 164 |
| BsrI | ACTGG | 2 cut(s) | 158, 294 |
| BssMI | GATC | 3 cut(s) | 3, 169, 174 |
| Bst2UI | CCWGG | 1 cut(s) | 227 |
| BstH2I | RGCGCY | 1 cut(s) | 124 |
| BstHHI | GCGC | 1 cut(s) | 123 |
| BstKTI | GATC | 3 cut(s) | 6, 172, 177 |
| BstMAI | GTCTC | 1 cut(s) | 125 |
| BstMBI | GATC | 3 cut(s) | 3, 169, 174 |
| BstNI | CCWGG | 1 cut(s) | 227 |
| BstSCI | CCNGG | 1 cut(s) | 225 |
| BstV1I | GCAGC | 1 cut(s) | 190 |
| BstV2I | GAAGAC | 1 cut(s) | 160 |
| BsuRI | GGCC | 1 cut(s) | 294 |
| CfoI | GCGC | 1 cut(s) | 123 |
| Cfr13I | GGNCC | 1 cut(s) | 292 |
| Csp6I | GTAC | 1 cut(s) | 287 |
| CviAII | CATG | 2 cut(s) | 40, 252 |
| CviJI | RGCY | 5 cut(s) | 44, 140, 167, 203, 294 |
| CviKI_1 | RGCY | 5 cut(s) | 44, 140, 167, 203, 294 |
| CviQI | GTAC | 1 cut(s) | 287 |
| DpnI | GATC | 3 cut(s) | 5, 171, 176 |
| DpnII | GATC | 3 cut(s) | 3, 169, 174 |
| DraI | TTTAAA | 1 cut(s) | 274 |
| Eco57I | CTGAAG | 1 cut(s) | 128 |
| EcoRII | CCWGG | 1 cut(s) | 225 |
| EcoT22I | ATGCAT | 1 cut(s) | 250 |
| FaeI | CATG | 2 cut(s) | 43, 255 |
| FaiI | YATR | 7 cut(s) | 17, 41, 232, 242, 253, 261, 265 |
| FatI | CATG | 2 cut(s) | 39, 251 |
| Fnu4HI | GCNGC | 1 cut(s) | 204 |
| Fsp4HI | GCNGC | 1 cut(s) | 204 |
| FspBI | CTAG | 1 cut(s) | 200 |
| GlaI | GCGC | 1 cut(s) | 122 |
| GluI | GCNGC | 1 cut(s) | 204 |
| GsuI | CTGGAG | 1 cut(s) | 231 |
| HaeII | RGCGCY | 1 cut(s) | 124 |
| HaeIII | GGCC | 1 cut(s) | 294 |
| HhaI | GCGC | 1 cut(s) | 123 |
| Hin1II | CATG | 2 cut(s) | 43, 255 |
| Hin6I | GCGC | 1 cut(s) | 121 |
| HinP1I | GCGC | 1 cut(s) | 121 |
| HinfI | GANTC | 1 cut(s) | 70 |
| Hpy188I | TCNGA | 1 cut(s) | 174 |
| Hpy188III | TCNNGA | 3 cut(s) | 62, 74, 210 |
| HpyAV | CCTTC | 2 cut(s) | 111, 152 |
| HpyCH4V | TGCA | 4 cut(s) | 39, 183, 234, 248 |
| Hsp92II | CATG | 2 cut(s) | 43, 255 |
| HspAI | GCGC | 1 cut(s) | 121 |
| Kzo9I | GATC | 3 cut(s) | 3, 169, 174 |
| LpnPI | CCDG | 6 cut(s) | 68, 171, 195, 212, 239, 275 |
| Lsp1109I | GCAGC | 1 cut(s) | 190 |
| LweI | GCATC | 1 cut(s) | 257 |
| MaeI | CTAG | 1 cut(s) | 200 |
| MalI | GATC | 3 cut(s) | 5, 171, 176 |
| MboI | GATC | 3 cut(s) | 3, 169, 174 |
| MboII | GAAGA | 1 cut(s) | 165 |
| MluCI | AATT | 1 cut(s) | 105 |
| MlyI | GAGTC | 1 cut(s) | 64 |
| MnlI | CCTC | 2 cut(s) | 69, 85 |
| Mph1103I | ATGCAT | 1 cut(s) | 250 |
| MseI | TTAA | 2 cut(s) | 104, 273 |
| MspR9I | CCNGG | 1 cut(s) | 227 |
| MvaI | CCWGG | 1 cut(s) | 227 |
| NdeII | GATC | 3 cut(s) | 3, 169, 174 |
| NlaIII | CATG | 2 cut(s) | 43, 255 |
| NsiI | ATGCAT | 1 cut(s) | 250 |
| PkrI | GCNGC | 1 cut(s) | 205 |
| PleI | GAGTC | 1 cut(s) | 64 |
| PpsI | GAGTC | 1 cut(s) | 64 |
| Psp6I | CCWGG | 1 cut(s) | 225 |
| PspGI | CCWGG | 1 cut(s) | 225 |
| PspPI | GGNCC | 1 cut(s) | 292 |
| RsaI | GTAC | 1 cut(s) | 288 |
| RsaNI | GTAC | 1 cut(s) | 287 |
| SaqAI | TTAA | 2 cut(s) | 104, 273 |
| SatI | GCNGC | 1 cut(s) | 204 |
| Sau3AI | GATC | 3 cut(s) | 3, 169, 174 |
| Sau96I | GGNCC | 1 cut(s) | 292 |
| SchI | GAGTC | 1 cut(s) | 64 |
| ScrFI | CCNGG | 1 cut(s) | 227 |
| SetI | ASST | 4 cut(s) | 38, 87, 169, 205 |
| SfaNI | GCATC | 1 cut(s) | 257 |
| Sse9I | AATT | 1 cut(s) | 105 |
| SspMI | CTAG | 1 cut(s) | 200 |
| StyD4I | CCNGG | 1 cut(s) | 225 |
| TasI | AATT | 1 cut(s) | 105 |
| TatI | WGTACW | 1 cut(s) | 286 |
| Tru1I | TTAA | 2 cut(s) | 104, 273 |
| Tru9I | TTAA | 2 cut(s) | 104, 273 |
| TseI | GCWGC | 1 cut(s) | 203 |
| TspDTI | ATGAA | 1 cut(s) | 4 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 37 |
| XspI | CTAG | 1 cut(s) | 200 |
| Zsp2I | ATGCAT | 1 cut(s) | 250 |