Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033997.1

Orthogroup ID

OG0019004

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 4009

Gene Structure 4009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033997.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

gttttggaggcagtttccttaattgatgttagaaggcgctttattgaggcattagtccttcagtttggaagaccagtagaagctgatccgatcgtttgcaaaaatgcaacttatctagctgcttctggagttttcacattcctcatcgccgacgccagattcgcttcctccctcggctccgttgtcttcttcgtcgtcgtgggtggctccgctaaaacccccagaactcggactccgcttggatttccaaagccaaagccaacgacgacgacgcttccgcattcatcatcatcatcatcatcatcatcacaattcgatataatttccactaccgcgtcgtcttcccatttggcgacgagaagcgagaaggctgcttttgataagattaatagtcgtctggatgcggaattcaatgaaggattggttggggaaagcaatgtggaagaatcggagattgatgcttctccggcgagttcacctgaggagaatgccatccttgatttgaccacagcagatgaagtcgaaagctcagcagtcgttagtcttgactctcttactcatcatcttcactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

BRE

Protein Analysis

190

Amino Acids

20.15

Weight (kDa)

4.96

Isoelectric Point (pI)

56.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019004)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0398161
rosa_multiflora	Rmu_sc0001648.1_g000015 Rmu_sc0007363.1_g000001 Rmu_sc0033997.1_g000001
rosa_roxburghii	Rroxscaffold_7G00217570
rosa_samantha	Rh2CG310100 Rh2DG349500 Rh6BG254800
rosa_wichuraiana	Rw7G033100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	335
AciI	CCGC	5 cut(s)	210, 236, 278, 333, 404
AclWI	GGATC	1 cut(s)	80
AcsI	RAATTY	1 cut(s)	407
AcuI	CTGAAG	1 cut(s)	44
AcyI	GRCGYC	1 cut(s)	153
AfiI	CCNNNNNNNGG	1 cut(s)	228
AgsI	TTSAA	1 cut(s)	412
AjuI	GAANNNNNNNTTGG	2 cut(s)	408, 440
AloI	GAACNNNNNNTCC	2 cut(s)	217, 249
AluBI	AGCT	3 cut(s)	83, 119, 528
AluI	AGCT	3 cut(s)	83, 119, 528
AlwI	GGATC	1 cut(s)	80
ApeKI	GCWGC	2 cut(s)	119, 371
ApoI	RAATTY	1 cut(s)	407
ArsI	GACNNNNNNTTYG	2 cut(s)	143, 175
AseI	ATTAAT	1 cut(s)	387
AspLEI	GCGC	1 cut(s)	39
AsuHPI	GGTGA	1 cut(s)	468
AxyI	CCTNAGG	1 cut(s)	480
BbsI	GAAGAC	3 cut(s)	76, 178, 333
BbvI	GCAGC	2 cut(s)	106, 358
BccI	CCATC	1 cut(s)	500
BcgI	CGANNNNNNTGC	2 cut(s)	353, 387
BfaI	CTAG	1 cut(s)	116
BfoI	RGCGCY	1 cut(s)	40
BisI	GCNGC	2 cut(s)	120, 372
BlpI	GCTNAGC	1 cut(s)	529
BlsI	GCNGC	2 cut(s)	121, 373
BmiI	GGNNCC	2 cut(s)	178, 208
BmsI	GCATC	2 cut(s)	391, 448
BpiI	GAAGAC	3 cut(s)	76, 178, 333
BpmI	CTGGAG	1 cut(s)	147
Bpu1102I	GCTNAGC	1 cut(s)	529
BsaHI	GRCGYC	1 cut(s)	153
BsaJI	CCNNGG	1 cut(s)	172
BsaXI	ACNNNNNCTCC	2 cut(s)	217, 247
Bsc4I	CCNNNNNNNGG	1 cut(s)	228
Bse1I	ACTGG	1 cut(s)	74
Bse21I	CCTNAGG	1 cut(s)	480
Bse3DI	GCAATG	1 cut(s)	442
BseDI	CCNNGG	1 cut(s)	172
BseGI	GGATG	2 cut(s)	406, 492
BseLI	CCNNNNNNNGG	1 cut(s)	228
BseMI	GCAATG	1 cut(s)	442
BseMII	CTCAG	2 cut(s)	471, 543
BseNI	ACTGG	1 cut(s)	74
BseRI	GAGGAG	1 cut(s)	497
BseXI	GCAGC	2 cut(s)	106, 358
Bsh1236I	CGCG	1 cut(s)	335
Bsh1285I	CGRYCG	1 cut(s)	93
BsiEI	CGRYCG	1 cut(s)	93
BsiSI	CCGG	1 cut(s)	467
BslI	CCNNNNNNNGG	1 cut(s)	228
BsmI	GAATGC	2 cut(s)	280, 493
Bsp143I	GATC	2 cut(s)	85, 90
Bsp1720I	GCTNAGC	1 cut(s)	529
BspACI	CCGC	5 cut(s)	210, 236, 278, 333, 404
BspCNI	CTCAG	2 cut(s)	472, 542
BspFNI	CGCG	1 cut(s)	335
BspLI	GGNNCC	2 cut(s)	178, 208
BspPI	GGATC	1 cut(s)	80
BsrDI	GCAATG	1 cut(s)	442
BsrI	ACTGG	1 cut(s)	74
BssECI	CCNNGG	1 cut(s)	172
BssMI	GATC	2 cut(s)	85, 90
BssNI	GRCGYC	1 cut(s)	153
BstACI	GRCGYC	1 cut(s)	153
BstDEI	CTNAG	2 cut(s)	480, 529
BstF5I	GGATG	2 cut(s)	406, 492
BstFNI	CGCG	1 cut(s)	335
BstH2I	RGCGCY	1 cut(s)	40
BstHHI	GCGC	1 cut(s)	39
BstKTI	GATC	2 cut(s)	88, 93
BstMBI	GATC	2 cut(s)	85, 90
BstMCI	CGRYCG	1 cut(s)	93
BstMWI	GCNNNNNNNGC	2 cut(s)	161, 467
BstUI	CGCG	1 cut(s)	335
BstV1I	GCAGC	2 cut(s)	106, 358
BstV2I	GAAGAC	3 cut(s)	76, 178, 333
Bsu36I	CCTNAGG	1 cut(s)	480
BtgZI	GCGATG	1 cut(s)	130
BtsCI	GGATG	2 cut(s)	406, 492
CfoI	GCGC	1 cut(s)	39
CseI	GACGC	3 cut(s)	161, 280, 324
CviJI	RGCY	8 cut(s)	83, 119, 177, 207, 253, 259, 371, 528
CviKI_1	RGCY	8 cut(s)	83, 119, 177, 207, 253, 259, 371, 528
DdeI	CTNAG	2 cut(s)	480, 529
DpnI	GATC	2 cut(s)	87, 92
DpnII	GATC	2 cut(s)	85, 90
Eco57I	CTGAAG	1 cut(s)	44
Eco81I	CCTNAGG	1 cut(s)	480
EcoRI	GAATTC	1 cut(s)	407
FaiI	YATR	1 cut(s)	320
Fnu4HI	GCNGC	2 cut(s)	120, 372
FokI	GGATG	2 cut(s)	413, 479
Fsp4HI	GCNGC	2 cut(s)	120, 372
FspBI	CTAG	1 cut(s)	116
GlaI	GCGC	1 cut(s)	38
GluI	GCNGC	2 cut(s)	120, 372
GsuI	CTGGAG	1 cut(s)	147
HaeII	RGCGCY	1 cut(s)	40
HapII	CCGG	1 cut(s)	467
HgaI	GACGC	3 cut(s)	161, 280, 324
HhaI	GCGC	1 cut(s)	39
Hin1I	GRCGYC	1 cut(s)	153
Hin6I	GCGC	1 cut(s)	37
HinP1I	GCGC	1 cut(s)	37
HinfI	GANTC	4 cut(s)	159, 232, 446, 548
HpaII	CCGG	1 cut(s)	467
HphI	GGTGA	1 cut(s)	468
Hpy166II	GTNNAC	1 cut(s)	476
Hpy188I	TCNGA	3 cut(s)	90, 231, 451
Hpy188III	TCNNGA	3 cut(s)	126, 398, 545
Hpy8I	GTNNAC	1 cut(s)	476
Hpy99I	CGWCG	8 cut(s)	155, 197, 200, 268, 271, 274, 340, 358
HpyAV	CCTTC	4 cut(s)	27, 68, 361, 410
HpyCH4V	TGCA	2 cut(s)	99, 107
HpyF10VI	GCNNNNNNNGC	2 cut(s)	161, 467
HpyF3I	CTNAG	2 cut(s)	480, 529
Hsp92I	GRCGYC	1 cut(s)	153
HspAI	GCGC	1 cut(s)	37
Kzo9I	GATC	2 cut(s)	85, 90
LmnI	GCTCC	2 cut(s)	182, 212
LpnPI	CCDG	7 cut(s)	87, 111, 169, 235, 383, 480, 492
Lsp1109I	GCAGC	2 cut(s)	106, 358
LweI	GCATC	2 cut(s)	391, 448
MaeI	CTAG	1 cut(s)	116
MalI	GATC	2 cut(s)	87, 92
MboI	GATC	2 cut(s)	85, 90
MboII	GAAGA	6 cut(s)	81, 178, 181, 333, 455, 557
MluCI	AATT	4 cut(s)	21, 311, 321, 407
MlyI	GAGTC	2 cut(s)	226, 542
MnlI	CCTC	5 cut(s)	40, 152, 178, 182, 475
MseI	TTAA	2 cut(s)	20, 387
MspI	CCGG	1 cut(s)	467
Mva1269I	GAATGC	2 cut(s)	280, 493
MvnI	CGCG	1 cut(s)	335
MwoI	GCNNNNNNNGC	2 cut(s)	161, 467
NdeII	GATC	2 cut(s)	85, 90
NlaIV	GGNNCC	2 cut(s)	178, 208
NmeAIII	GCCGAG	1 cut(s)	153
PctI	GAATGC	2 cut(s)	280, 493
PfeI	GAWTC	2 cut(s)	159, 446
PkrI	GCNGC	2 cut(s)	121, 373
Ple19I	CGATCG	1 cut(s)	93
PleI	GAGTC	2 cut(s)	226, 542
PpsI	GAGTC	2 cut(s)	226, 542
PshBI	ATTAAT	1 cut(s)	387
PspN4I	GGNNCC	2 cut(s)	178, 208
PvuI	CGATCG	1 cut(s)	93
SaqAI	TTAA	2 cut(s)	20, 387
SatI	GCNGC	2 cut(s)	120, 372
Sau3AI	GATC	2 cut(s)	85, 90
SchI	GAGTC	2 cut(s)	226, 542
SetI	ASST	4 cut(s)	85, 121, 481, 530
SfaNI	GCATC	2 cut(s)	391, 448
Sse9I	AATT	4 cut(s)	21, 311, 321, 407
SsiI	CCGC	5 cut(s)	210, 236, 278, 333, 404
SspMI	CTAG	1 cut(s)	116
TaqI	TCGA	2 cut(s)	315, 522
TasI	AATT	4 cut(s)	21, 311, 321, 407
TfiI	GAWTC	2 cut(s)	159, 446
Tru1I	TTAA	2 cut(s)	20, 387
Tru9I	TTAA	2 cut(s)	20, 387
TseI	GCWGC	2 cut(s)	119, 371
TspDTI	ATGAA	3 cut(s)	273, 429, 531
TspGWI	ACGGA	1 cut(s)	169
VspI	ATTAAT	1 cut(s)	387
XapI	RAATTY	1 cut(s)	407
XspI	CTAG	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.