Rmu_sc0001648.1_g000015

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001648.1
OG0019004
Physical Location & Seq
Forward (+)
133929 .. 136240
2312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001648.1_g000015.1.cds

Sequence Viewer

Length: 1026 bp
atgggtatctcatccacatggttgacccggcacagacgcaggcactgcatcaccacccgttttcattatcttcttctccctccatttccaacgcggcaaacccggccaccagaattggagagcaaaaatcagatggaccatgccattcctctctaccggaagcccacgctccgccgccgaatcacttggccgaccaacaccaccgttcgccactccaatgcaacaaaatggcgccgcaatacgacgttgtcggagctccaaatgcccgtagaagtgaacgaccgaacgagtagcgactctgcttcagtcccggcgcacaaagtcaccgtccacgacagacaacgctgcgtggtccacgagttcttcgtcccagaggatcagtacatattgcacactgctgaggcacagaacatcactcttccatttgcttgccggcacggttgttgtactagttgtgctgtacgtgtgaagtctggaaaacttaaccagcctcaggcactagggatatcggctgaattgaaatcaaagggatatgcacttctctgtgtgggttttccatcatctgatcttgaagtagaaacacaagatgaggatgaggtaattcctttaaatgtgataagtgttggttcatttgatgatcttctttttcatatttctttttccaataggtgcatggctgaatatctcccccctcttgaagagactcttgaaaaacaggttttggaggcagtttccttaattgatgttagaaggcgctttattgaggcattagccgttcagtttggaagaccagtggaagctgatccgatcttttgcagaaaggcaacgtttctagctgcttctggagttttcacattcctggttcatttaacaattacaactcagtttccaaagcaaccgccagctatagtgcttcaaagttcccaggcaaggatattctcctcccaacctgtagattatttagtatcattgtcaaaccttagatatataggtagtcagtgttgtctgcttcagaccaaaggttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00195 map00195
Pfam Domains
Protein Families
Fer2

Protein Analysis

341

Amino Acids

38.66

Weight (kDa)

8.87

Isoelectric Point (pI)

61.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019004)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0398161
rosa_multiflora Rmu_sc0001648.1_g000015 Rmu_sc0007363.1_g000001 Rmu_sc0033997.1_g000001
rosa_roxburghii Rroxscaffold_7G00217570
rosa_samantha Rh2CG310100 Rh2DG349500 Rh6BG254800
rosa_wichuraiana Rw7G033100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 231
AccII CGCG 1 cut(s) 94
AciI CCGC 5 cut(s) 94, 172, 175, 235, 899
AclI AACGTT 1 cut(s) 827
AclWI GGATC 2 cut(s) 384, 797
AcoI YGGCCR 2 cut(s) 104, 188
AcuI CTGAAG 2 cut(s) 288, 995
AcyI GRCGYC 1 cut(s) 232
AfaI GTAC 3 cut(s) 383, 448, 462
AfiI CCNNNNNNNGG 2 cut(s) 493, 930
AflIII ACRYGT 1 cut(s) 463
AgsI TTSAA 5 cut(s) 520, 572, 698, 710, 917
AhlI ACTAGT 1 cut(s) 449
AjnI CCWGG 2 cut(s) 858, 924
AluBI AGCT 4 cut(s) 256, 800, 836, 905
AluI AGCT 4 cut(s) 256, 800, 836, 905
Alw21I GWGCWC 1 cut(s) 258
Alw26I GTCTC 1 cut(s) 695
AlwI GGATC 2 cut(s) 384, 797
AlwNI CAGNNNCTG 1 cut(s) 45
AoxI GGCC 2 cut(s) 104, 188
ApeKI GCWGC 2 cut(s) 345, 836
ArsI GACNNNNNNTTYG 2 cut(s) 312, 344
AspLEI GCGC 3 cut(s) 234, 316, 756
AspS9I GGNCC 2 cut(s) 136, 352
AsuC2I CCSGG 3 cut(s) 28, 103, 311
AsuHPI GGTGA 2 cut(s) 43, 316
AvaII GGWCC 2 cut(s) 136, 352
AxyI CCTNAGG 1 cut(s) 492
BanI GGYRCC 1 cut(s) 231
BanII GRGCYC 1 cut(s) 258
BauI CACGAG 1 cut(s) 356
BbsI GAAGAC 1 cut(s) 793
Bbv12I GWGCWC 1 cut(s) 258
BbvCI CCTCAGC 1 cut(s) 399
BbvI GCAGC 2 cut(s) 332, 823
BccI CCATC 2 cut(s) 127, 565
BceAI ACGGC 1 cut(s) 758
BciT130I CCWGG 2 cut(s) 860, 926
BcnI CCSGG 3 cut(s) 28, 103, 311
BcoDI GTCTC 1 cut(s) 695
BcuI ACTAGT 1 cut(s) 449
BfaI CTAG 3 cut(s) 450, 500, 833
BfmI CTRYAG 2 cut(s) 906, 951
BfoI RGCGCY 2 cut(s) 235, 757
BisI GCNGC 5 cut(s) 95, 175, 235, 346, 837
BlsI GCNGC 5 cut(s) 96, 176, 236, 347, 838
Bme1390I CCNGG 5 cut(s) 28, 103, 311, 860, 926
Bme18I GGWCC 2 cut(s) 136, 352
BmgT120I GGNCC 2 cut(s) 136, 352
BmiI GGNNCC 1 cut(s) 233
BmrFI CCNGG 5 cut(s) 28, 103, 311, 860, 926
BmsI GCATC 1 cut(s) 57
BpiI GAAGAC 1 cut(s) 793
BpmI CTGGAG 1 cut(s) 864
Bpu10I CCTNAGC 1 cut(s) 399
BpuMI CCSGG 3 cut(s) 28, 103, 311
BsaAI YACGTR 1 cut(s) 464
BsaHI GRCGYC 1 cut(s) 232
BsaJI CCNNGG 1 cut(s) 924
BsaWI WCCGGW 1 cut(s) 156
Bsc4I CCNNNNNNNGG 2 cut(s) 493, 930
Bse118I RCCGGY 1 cut(s) 432
Bse1I ACTGG 1 cut(s) 791
Bse21I CCTNAGG 1 cut(s) 492
BseBI CCWGG 2 cut(s) 860, 926
BseDI CCNNGG 1 cut(s) 924
BseGI GGATG 2 cut(s) 11, 598
BseLI CCNNNNNNNGG 2 cut(s) 493, 930
BseMII CTCAG 3 cut(s) 390, 506, 896
BseNI ACTGG 1 cut(s) 791
BseRI GAGGAG 1 cut(s) 931
BseXI GCAGC 2 cut(s) 332, 823
Bsh1236I CGCG 1 cut(s) 94
Bsh1285I CGRYCG 1 cut(s) 283
BshFI GGCC 2 cut(s) 106, 190
BshNI GGYRCC 1 cut(s) 231
BsiEI CGRYCG 1 cut(s) 283
BsiHKAI GWGCWC 1 cut(s) 258
BsiSI CCGG 5 cut(s) 28, 103, 157, 311, 433
BslFI GGGAC 2 cut(s) 293, 353
BslI CCNNNNNNNGG 2 cut(s) 493, 930
BsmAI GTCTC 1 cut(s) 695
BsmFI GGGAC 2 cut(s) 293, 353
BsnI GGCC 2 cut(s) 106, 190
Bsp1286I GDGCHC 1 cut(s) 258
Bsp143I GATC 5 cut(s) 376, 565, 637, 802, 807
BspACI CCGC 5 cut(s) 94, 172, 175, 235, 899
BspANI GGCC 2 cut(s) 106, 190
BspCNI CTCAG 3 cut(s) 391, 505, 895
BspFNI CGCG 1 cut(s) 94
BspLI GGNNCC 1 cut(s) 233
BspPI GGATC 2 cut(s) 384, 797
BspT107I GGYRCC 1 cut(s) 231
BsrFI RCCGGY 1 cut(s) 432
BsrI ACTGG 1 cut(s) 791
BssAI RCCGGY 1 cut(s) 432
BssECI CCNNGG 1 cut(s) 924
BssMI GATC 5 cut(s) 376, 565, 637, 802, 807
BssNI GRCGYC 1 cut(s) 232
BssSI CACGAG 1 cut(s) 356
Bst2BI CACGAG 1 cut(s) 356
Bst2UI CCWGG 2 cut(s) 860, 926
Bst4CI ACNGT 3 cut(s) 205, 328, 440
Bst6I CTCTTC 2 cut(s) 423, 693
BstACI GRCGYC 1 cut(s) 232
BstAPI GCANNNNNTGC 1 cut(s) 45
BstBAI YACGTR 1 cut(s) 464
BstC8I GCNNGC 4 cut(s) 41, 430, 434, 903
BstDEI CTNAG 4 cut(s) 399, 492, 882, 980
BstF5I GGATG 2 cut(s) 11, 598
BstFNI CGCG 1 cut(s) 94
BstH2I RGCGCY 2 cut(s) 235, 757
BstHHI GCGC 3 cut(s) 234, 316, 756
BstKTI GATC 5 cut(s) 379, 568, 640, 805, 810
BstMAI GTCTC 1 cut(s) 695
BstMBI GATC 5 cut(s) 376, 565, 637, 802, 807
BstMCI CGRYCG 1 cut(s) 283
BstMWI GCNNNNNNNGC 3 cut(s) 45, 103, 262
BstNI CCWGG 2 cut(s) 860, 926
BstSCI CCNGG 5 cut(s) 26, 101, 309, 858, 924
BstSFI CTRYAG 2 cut(s) 906, 951
BstUI CGCG 1 cut(s) 94
BstV1I GCAGC 2 cut(s) 332, 823
BstV2I GAAGAC 1 cut(s) 793
Bsu36I CCTNAGG 1 cut(s) 492
BsuRI GGCC 2 cut(s) 106, 190
BtsCI GGATG 2 cut(s) 11, 598
BtsI GCAGTG 2 cut(s) 43, 393
BtsIMutI CAGTG 4 cut(s) 43, 393, 798, 1004
Cac8I GCNNGC 4 cut(s) 41, 430, 434, 903
CaiI CAGNNNCTG 1 cut(s) 45
CfoI GCGC 3 cut(s) 234, 316, 756
Cfr10I RCCGGY 1 cut(s) 432
Cfr13I GGNCC 2 cut(s) 136, 352
CseI GACGC 1 cut(s) 45
Csp6I GTAC 3 cut(s) 382, 447, 461
CspCI CAANNNNNGTGG 2 cut(s) 96, 131
CviAII CATG 3 cut(s) 18, 140, 673
CviQI GTAC 3 cut(s) 382, 447, 461
DdeI CTNAG 4 cut(s) 399, 492, 882, 980
DinI GGCGCC 1 cut(s) 233
DpnI GATC 5 cut(s) 378, 567, 639, 804, 809
DpnII GATC 5 cut(s) 376, 565, 637, 802, 807
DraI TTTAAA 1 cut(s) 609
EaeI YGGCCR 2 cut(s) 104, 188
Eam1104I CTCTTC 2 cut(s) 423, 693
EarI CTCTTC 2 cut(s) 423, 693
EciI GGCGGA 1 cut(s) 161
Ecl136II GAGCTC 1 cut(s) 256
Eco24I GRGCYC 1 cut(s) 258
Eco32I GATATC 1 cut(s) 507
Eco47I GGWCC 2 cut(s) 136, 352
Eco53kI GAGCTC 1 cut(s) 256
Eco57I CTGAAG 2 cut(s) 288, 995
Eco81I CCTNAGG 1 cut(s) 492
EcoICRI GAGCTC 1 cut(s) 256
EcoRII CCWGG 2 cut(s) 858, 924
EcoRV GATATC 1 cut(s) 507
EcoT38I GRGCYC 1 cut(s) 258
EgeI GGCGCC 1 cut(s) 233
EheI GGCGCC 1 cut(s) 233
FaeI CATG 3 cut(s) 21, 143, 676
FaiI YATR 9 cut(s) 19, 141, 386, 534, 651, 674, 908, 987, 989
FalI AAGNNNNNCTT 2 cut(s) 690, 722
FaqI GGGAC 2 cut(s) 293, 353
FatI CATG 3 cut(s) 17, 139, 672
Fnu4HI GCNGC 5 cut(s) 95, 175, 235, 346, 837
FokI GGATG 1 cut(s) 605
FriOI GRGCYC 1 cut(s) 258
Fsp4HI GCNGC 5 cut(s) 95, 175, 235, 346, 837
FspBI CTAG 3 cut(s) 450, 500, 833
GlaI GCGC 3 cut(s) 233, 315, 755
GluI GCNGC 5 cut(s) 95, 175, 235, 346, 837
GsuI CTGGAG 1 cut(s) 864
HaeII RGCGCY 2 cut(s) 235, 757
HaeIII GGCC 2 cut(s) 106, 190
HapII CCGG 5 cut(s) 28, 103, 157, 311, 433
HgaI GACGC 1 cut(s) 45
HhaI GCGC 3 cut(s) 234, 316, 756
Hin1I GRCGYC 1 cut(s) 232
Hin1II CATG 3 cut(s) 21, 143, 676
Hin6I GCGC 3 cut(s) 232, 314, 754
HinP1I GCGC 3 cut(s) 232, 314, 754
HincII GTYRAC 1 cut(s) 24
HindII GTYRAC 1 cut(s) 24
HinfI GANTC 3 cut(s) 180, 296, 703
HpaII CCGG 5 cut(s) 28, 103, 157, 311, 433
HphI GGTGA 2 cut(s) 43, 316
Hpy166II GTNNAC 4 cut(s) 24, 277, 331, 355
Hpy188I TCNGA 5 cut(s) 132, 253, 565, 807, 1014
Hpy188III TCNNGA 5 cut(s) 474, 569, 695, 707, 843
Hpy8I GTNNAC 4 cut(s) 24, 277, 331, 355
Hpy99I CGWCG 1 cut(s) 247
HpyAV CCTTC 1 cut(s) 744
HpyCH4III ACNGT 3 cut(s) 205, 328, 440
HpyCH4IV ACGT 3 cut(s) 245, 463, 827
HpyCH4V TGCA 6 cut(s) 48, 221, 391, 536, 672, 816
HpyF10VI GCNNNNNNNGC 3 cut(s) 45, 103, 262
HpyF3I CTNAG 4 cut(s) 399, 492, 882, 980
HpySE526I ACGT 3 cut(s) 245, 463, 827
Hsp92I GRCGYC 1 cut(s) 232
Hsp92II CATG 3 cut(s) 21, 143, 676
HspAI GCGC 3 cut(s) 232, 314, 754
KasI GGCGCC 1 cut(s) 231
KroI GCCGGC 1 cut(s) 432
KroNI GCCGGC 1 cut(s) 434
Kzo9I GATC 5 cut(s) 376, 565, 637, 802, 807
LmnI GCTCC 3 cut(s) 174, 253, 261
Lsp1109I GCAGC 2 cut(s) 332, 823
LweI GCATC 1 cut(s) 57
MaeI CTAG 3 cut(s) 450, 500, 833
MaeII ACGT 3 cut(s) 245, 463, 827
MaeIII GTNAC 1 cut(s) 322
MalI GATC 5 cut(s) 378, 567, 639, 804, 809
MboI GATC 5 cut(s) 376, 565, 637, 802, 807
MboII GAAGA 7 cut(s) 62, 65, 355, 410, 632, 710, 798
MhlI GDGCHC 1 cut(s) 258
MluCI AATT 5 cut(s) 113, 515, 600, 738, 873
Mly113I GGCGCC 1 cut(s) 232
MlyI GAGTC 2 cut(s) 290, 697
MmeI TCCRAC 2 cut(s) 113, 231
MroNI GCCGGC 1 cut(s) 432
MseI TTAA 5 cut(s) 483, 608, 737, 869, 1024
MslI CAYNNNNRTG 2 cut(s) 16, 216
MspI CCGG 5 cut(s) 28, 103, 157, 311, 433
MspR9I CCNGG 5 cut(s) 28, 103, 311, 860, 926
MvaI CCWGG 2 cut(s) 860, 926
MvnI CGCG 1 cut(s) 94
MwoI GCNNNNNNNGC 3 cut(s) 45, 103, 262
NaeI GCCGGC 1 cut(s) 434
NarI GGCGCC 1 cut(s) 232
NciI CCSGG 3 cut(s) 28, 103, 311
NdeII GATC 5 cut(s) 376, 565, 637, 802, 807
NgoMIV GCCGGC 1 cut(s) 432
NlaIII CATG 3 cut(s) 21, 143, 676
NlaIV GGNNCC 1 cut(s) 233
NmuCI GTSAC 1 cut(s) 322
PcsI WCGNNNNNNNCGW 1 cut(s) 363
PdiI GCCGGC 1 cut(s) 434
PfeI GAWTC 1 cut(s) 180
PflFI GACNNNGTC 1 cut(s) 247
PkrI GCNGC 5 cut(s) 96, 176, 236, 347, 838
PleI GAGTC 2 cut(s) 290, 697
PluTI GGCGCC 1 cut(s) 235
PpsI GAGTC 2 cut(s) 290, 697
Ppu21I YACGTR 1 cut(s) 464
Psp124BI GAGCTC 1 cut(s) 258
Psp1406I AACGTT 1 cut(s) 827
Psp6I CCWGG 2 cut(s) 858, 924
PspGI CCWGG 2 cut(s) 858, 924
PspN4I GGNNCC 1 cut(s) 233
PspPI GGNCC 2 cut(s) 136, 352
PstNI CAGNNNCTG 1 cut(s) 45
PsyI GACNNNGTC 1 cut(s) 247
RsaI GTAC 3 cut(s) 383, 448, 462
RsaNI GTAC 3 cut(s) 382, 447, 461
RseI CAYNNNNRTG 2 cut(s) 16, 216
SacI GAGCTC 1 cut(s) 258
SaqAI TTAA 5 cut(s) 483, 608, 737, 869, 1024
SatI GCNGC 5 cut(s) 95, 175, 235, 346, 837
Sau3AI GATC 5 cut(s) 376, 565, 637, 802, 807
Sau96I GGNCC 2 cut(s) 136, 352
SchI GAGTC 2 cut(s) 290, 697
ScrFI CCNGG 5 cut(s) 28, 103, 311, 860, 926
SduI GDGCHC 1 cut(s) 258
SfaNI GCATC 1 cut(s) 57
SfcI CTRYAG 2 cut(s) 906, 951
SfoI GGCGCC 1 cut(s) 233
SinI GGWCC 2 cut(s) 136, 352
SmiMI CAYNNNNRTG 2 cut(s) 16, 216
SpeI ACTAGT 1 cut(s) 449
Sse9I AATT 5 cut(s) 113, 515, 600, 738, 873
SsiI CCGC 5 cut(s) 94, 172, 175, 235, 899
SspDI GGCGCC 1 cut(s) 231
SspMI CTAG 3 cut(s) 450, 500, 833
SstI GAGCTC 1 cut(s) 258
StyD4I CCNGG 5 cut(s) 26, 101, 309, 858, 924
TaaI ACNGT 3 cut(s) 205, 328, 440
TaiI ACGT 3 cut(s) 248, 466, 830
TaqII GACCGA 1 cut(s) 297
TasI AATT 5 cut(s) 113, 515, 600, 738, 873
TatI WGTACW 2 cut(s) 381, 446
TauI GCSGC 3 cut(s) 97, 177, 237
TfiI GAWTC 1 cut(s) 180
Tru1I TTAA 5 cut(s) 483, 608, 737, 869, 1024
Tru9I TTAA 5 cut(s) 483, 608, 737, 869, 1024
TscAI CASTG 4 cut(s) 50, 400, 798, 1004
TseFI GTSAC 1 cut(s) 322
TseI GCWGC 2 cut(s) 345, 836
Tsp45I GTSAC 1 cut(s) 322
TspDTI ATGAA 4 cut(s) 53, 618, 638, 854
TspRI CASTG 4 cut(s) 50, 400, 798, 1004
Tth111I GACNNNGTC 1 cut(s) 247
VpaK11BI GGWCC 2 cut(s) 136, 352
XcmI CCANNNNNNNNNTGG 1 cut(s) 670
XspI CTAG 3 cut(s) 450, 500, 833
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.