Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0020947

Physical Location & Seq

Genomic Coordinates Forward (+)

34607934 .. 34608263

Gene Structure 330 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGTGATTTTTCACATTAATGGAAGTTGTCAGATCTTTAGTTTGCTTGTGTTTGACCAGATTGAGCAATATCTAGTAGAAAATCGAGGTTTCACCCCTGGACTACCTTTACACATCATTGCACATAGTTCATATATAGCTGCATTATGGTTTGTTCCAATGTGCATTCTATTTTTTGGAGACTTTTTAGGATTATTTGGAGGCTTGGTATTCACCTCAACATCATTTTATATGCATTGTGTTATGTGGCTTGTCACCCAAAAACCAAAAGCATTTAGCTTTCACCGGCTTACATTATGGTCTGTATTGTTATTGGTGTTCTACTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0034220 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

109

Amino Acids

12.6

Weight (kDa)

6.94

Isoelectric Point (pI)

48.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	2 - 107	4.3e-09	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0020947)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39715
rosa_chinensis	RchiOBHm_Chr4g0410801 RchiOBHm_Chr5g0026791
rosa_samantha	Rh4DG186600 Rh7DG412600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AjnI	CCWGG	1 cut(s)	97
AluBI	AGCT	2 cut(s)	140, 279
AluI	AGCT	2 cut(s)	140, 279
Alw26I	GTCTC	1 cut(s)	174
ApeKI	GCWGC	1 cut(s)	140
AseI	ATTAAT	1 cut(s)	18
AsuHPI	GGTGA	5 cut(s)	16, 85, 205, 247, 275
BbvI	GCAGC	1 cut(s)	127
BciT130I	CCWGG	1 cut(s)	99
BcoDI	GTCTC	1 cut(s)	174
BfaI	CTAG	1 cut(s)	74
BglII	AGATCT	1 cut(s)	33
BisI	GCNGC	1 cut(s)	141
BlsI	GCNGC	1 cut(s)	142
Bme1390I	CCNGG	1 cut(s)	99
BmrFI	CCNGG	1 cut(s)	99
BsaJI	CCNNGG	1 cut(s)	97
BsaXI	ACNNNNNCTCC	2 cut(s)	192, 222
Bse118I	RCCGGY	1 cut(s)	285
Bse3DI	GCAATG	1 cut(s)	117
BseBI	CCWGG	1 cut(s)	99
BseDI	CCNNGG	1 cut(s)	97
BseMI	GCAATG	1 cut(s)	117
BseXI	GCAGC	1 cut(s)	127
BsiSI	CCGG	1 cut(s)	286
BsmAI	GTCTC	1 cut(s)	174
BsmI	GAATGC	1 cut(s)	165
Bsp143I	GATC	1 cut(s)	33
BsrDI	GCAATG	1 cut(s)	117
BsrFI	RCCGGY	1 cut(s)	285
BssAI	RCCGGY	1 cut(s)	285
BssECI	CCNNGG	1 cut(s)	97
BssMI	GATC	1 cut(s)	33
Bst2UI	CCWGG	1 cut(s)	99
BstKTI	GATC	1 cut(s)	36
BstMAI	GTCTC	1 cut(s)	174
BstMBI	GATC	1 cut(s)	33
BstNI	CCWGG	1 cut(s)	99
BstSCI	CCNGG	1 cut(s)	97
BstV1I	GCAGC	1 cut(s)	127
BstX2I	RGATCY	1 cut(s)	33
BstYI	RGATCY	1 cut(s)	33
Cfr10I	RCCGGY	1 cut(s)	285
CviJI	RGCY	5 cut(s)	140, 204, 250, 279, 289
CviKI_1	RGCY	5 cut(s)	140, 204, 250, 279, 289
DpnI	GATC	1 cut(s)	35
DpnII	GATC	1 cut(s)	33
EcoRII	CCWGG	1 cut(s)	97
EcoT22I	ATGCAT	1 cut(s)	237
FaiI	YATR	9 cut(s)	126, 133, 135, 137, 148, 231, 233, 245, 298
Fnu4HI	GCNGC	1 cut(s)	141
Fsp4HI	GCNGC	1 cut(s)	141
FspBI	CTAG	1 cut(s)	74
GluI	GCNGC	1 cut(s)	141
HapII	CCGG	1 cut(s)	286
HpaII	CCGG	1 cut(s)	286
HphI	GGTGA	5 cut(s)	16, 85, 205, 247, 275
Hpy188I	TCNGA	1 cut(s)	33
HpyCH4V	TGCA	4 cut(s)	122, 143, 165, 235
Kzo9I	GATC	1 cut(s)	33
LpnPI	CCDG	4 cut(s)	71, 84, 111, 299
Lsp1109I	GCAGC	1 cut(s)	127
MaeI	CTAG	1 cut(s)	74
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	1 cut(s)	35
MboI	GATC	1 cut(s)	33
MflI	RGATCY	1 cut(s)	33
MnlI	CCTC	3 cut(s)	80, 194, 226
Mph1103I	ATGCAT	1 cut(s)	237
MseI	TTAA	1 cut(s)	18
MslI	CAYNNNNRTG	1 cut(s)	18
MspI	CCGG	1 cut(s)	286
MspR9I	CCNGG	1 cut(s)	99
Mva1269I	GAATGC	1 cut(s)	165
MvaI	CCWGG	1 cut(s)	99
NdeII	GATC	1 cut(s)	33
NmuCI	GTSAC	1 cut(s)	253
NsiI	ATGCAT	1 cut(s)	237
PctI	GAATGC	1 cut(s)	165
PkrI	GCNGC	1 cut(s)	142
PshBI	ATTAAT	1 cut(s)	18
Psp6I	CCWGG	1 cut(s)	97
PspGI	CCWGG	1 cut(s)	97
PsuI	RGATCY	1 cut(s)	33
RseI	CAYNNNNRTG	1 cut(s)	18
SaqAI	TTAA	1 cut(s)	18
SatI	GCNGC	1 cut(s)	141
Sau3AI	GATC	1 cut(s)	33
ScrFI	CCNGG	1 cut(s)	99
SetI	ASST	5 cut(s)	91, 109, 142, 218, 281
SgeI	CNNG	9 cut(s)	59, 70, 86, 98, 110, 111, 217, 263, 298
SmiMI	CAYNNNNRTG	1 cut(s)	18
SspMI	CTAG	1 cut(s)	74
StyD4I	CCNGG	1 cut(s)	97
TaqI	TCGA	1 cut(s)	85
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TseFI	GTSAC	1 cut(s)	253
TseI	GCWGC	1 cut(s)	140
Tsp45I	GTSAC	1 cut(s)	253
TspDTI	ATGAA	1 cut(s)	120
VspI	ATTAAT	1 cut(s)	18
XspI	CTAG	1 cut(s)	74
Zsp2I	ATGCAT	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.