Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0021398

Physical Location & Seq

Genomic Coordinates Forward (+)

36839779 .. 36840192

Gene Structure 414 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGCAACTGTGGCAGAGTATACTAGCTATGCTGACACTTTCAACAATTCCAGGCCACTATGTGCTTTTCTGGGAGCTTCTCCTAAATGGCTCAACTCCAATCCCACCCTCAGTGTTTGAGGACTACTGCTTTGTCATTGAGGAGTCACTCAACAGTGTGTACCGCCAAGGCAAAGTCTCCAACAAATCGATCGGGCCGCTAGAGATCAAGATTGTTCAGGCTGGGACTTTTGACAAGCTCATCATCTATGCCATAAGCTTGGGAGCTTCCATTAACCAATACAAGACCCCAAGGTGTGTGAAGTTTGCACCCATTGTTGAGCTCTTGAACTCTAGGGTGGTCTCAAACTACCTCAGTCCCAAGTACCCCAAGTGGGCCCCTGGCCACAAGCAATGGTGCAAAAACTATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006790 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009403 GO:0009404 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009653 GO:0009700 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009826 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010120 GO:0010252 GO:0010279 GO:0016043 GO:0016049 GO:0016874 GO:0016879 GO:0016881 GO:0018130 GO:0019222 GO:0019438 GO:0019748 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032870 GO:0032989 GO:0034641 GO:0040007 GO:0042221 GO:0042430 GO:0042435 GO:0042592 GO:0042762 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0046217 GO:0046483 GO:0048518 GO:0048522 GO:0048589 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051176 GO:0051716 GO:0052314 GO:0052315 GO:0052317 GO:0052318 GO:0052319 GO:0052320 GO:0052322 GO:0060560 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0071840 GO:1900376 GO:1900378 GO:1901182 GO:1901183 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

GH3

Protein Analysis

137

Amino Acids

15.57

Weight (kDa)

8.98

Isoelectric Point (pI)

38.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GH3_C	PF23572	12 - 102	2.9e-27	GH3 family C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0021398)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0412851
rosa_multiflora	Rmu_sc0003022.1_g000006
rosa_samantha	Rh4BG176300 Rh4CG187000 Rh4DG173000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	19
AciI	CCGC	2 cut(s)	163, 197
AcoI	YGGCCR	1 cut(s)	382
AdeI	CACNNNGTG	1 cut(s)	61
AfaI	GTAC	2 cut(s)	161, 365
AfiI	CCNNNNNNNGG	1 cut(s)	373
AgsI	TTSAA	2 cut(s)	42, 328
AjnI	CCWGG	2 cut(s)	49, 379
AluBI	AGCT	6 cut(s)	26, 76, 238, 258, 266, 322
AluI	AGCT	6 cut(s)	26, 76, 238, 258, 266, 322
Alw21I	GWGCWC	1 cut(s)	324
Alw26I	GTCTC	2 cut(s)	181, 346
AoxI	GGCC	4 cut(s)	52, 194, 375, 382
ApaI	GGGCCC	1 cut(s)	379
ArsI	GACNNNNNNTTYG	2 cut(s)	113, 145
AspS9I	GGNCC	3 cut(s)	194, 375, 376
BaeGI	GKGCMC	1 cut(s)	379
BalI	TGGCCA	1 cut(s)	384
BanII	GRGCYC	2 cut(s)	324, 379
Bbv12I	GWGCWC	1 cut(s)	324
BciT130I	CCWGG	2 cut(s)	51, 381
BcoDI	GTCTC	2 cut(s)	181, 346
BfaI	CTAG	3 cut(s)	23, 200, 333
BisI	GCNGC	1 cut(s)	197
BlsI	GCNGC	1 cut(s)	198
Bme1390I	CCNGG	2 cut(s)	51, 381
BmgT120I	GGNCC	3 cut(s)	194, 375, 376
BmiI	GGNNCC	2 cut(s)	377, 378
BmrFI	CCNGG	2 cut(s)	51, 381
Bsa29I	ATCGAT	1 cut(s)	188
BsaI	GGTCTC	1 cut(s)	346
BsaJI	CCNNGG	3 cut(s)	166, 290, 379
Bsc4I	CCNNNNNNNGG	1 cut(s)	373
Bse3DI	GCAATG	1 cut(s)	398
BseBI	CCWGG	2 cut(s)	51, 381
BseCI	ATCGAT	1 cut(s)	188
BseDI	CCNNGG	3 cut(s)	166, 290, 379
BseLI	CCNNNNNNNGG	1 cut(s)	373
BseMI	GCAATG	1 cut(s)	398
BseMII	CTCAG	2 cut(s)	123, 367
BseRI	GAGGAG	1 cut(s)	155
BseSI	GKGCMC	1 cut(s)	379
BseYI	CCCAGC	1 cut(s)	221
Bsh1285I	CGRYCG	1 cut(s)	192
BshFI	GGCC	4 cut(s)	54, 196, 377, 384
BshVI	ATCGAT	1 cut(s)	188
BsiEI	CGRYCG	1 cut(s)	192
BsiHKAI	GWGCWC	1 cut(s)	324
BslFI	GGGAC	2 cut(s)	238, 342
BslI	CCNNNNNNNGG	1 cut(s)	373
BsmAI	GTCTC	2 cut(s)	181, 346
BsmFI	GGGAC	2 cut(s)	238, 342
BsnI	GGCC	4 cut(s)	54, 196, 377, 384
Bso31I	GGTCTC	1 cut(s)	346
Bsp120I	GGGCCC	1 cut(s)	375
Bsp1286I	GDGCHC	2 cut(s)	324, 379
Bsp143I	GATC	2 cut(s)	189, 204
BspACI	CCGC	2 cut(s)	163, 197
BspANI	GGCC	4 cut(s)	54, 196, 377, 384
BspCNI	CTCAG	2 cut(s)	122, 366
BspDI	ATCGAT	1 cut(s)	188
BspLI	GGNNCC	2 cut(s)	377, 378
BspTNI	GGTCTC	1 cut(s)	346
BsrDI	GCAATG	1 cut(s)	398
BssECI	CCNNGG	3 cut(s)	166, 290, 379
BssMI	GATC	2 cut(s)	189, 204
BssNAI	GTATAC	1 cut(s)	20
BssT1I	CCWWGG	2 cut(s)	166, 290
Bst1107I	GTATAC	1 cut(s)	20
Bst2UI	CCWGG	2 cut(s)	51, 381
Bst4CI	ACNGT	2 cut(s)	9, 155
BstDEI	CTNAG	2 cut(s)	109, 353
BstKTI	GATC	2 cut(s)	192, 207
BstMAI	GTCTC	2 cut(s)	181, 346
BstMBI	GATC	2 cut(s)	189, 204
BstMCI	CGRYCG	1 cut(s)	192
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstNI	CCWGG	2 cut(s)	51, 381
BstSCI	CCNGG	2 cut(s)	49, 379
BstSLI	GKGCMC	1 cut(s)	379
BstXI	CCANNNNNNTGG	1 cut(s)	259
BstZ17I	GTATAC	1 cut(s)	20
Bsu15I	ATCGAT	1 cut(s)	188
BsuRI	GGCC	4 cut(s)	54, 196, 377, 384
BsuTUI	ATCGAT	1 cut(s)	188
BtsIMutI	CAGTG	2 cut(s)	117, 160
Cfr13I	GGNCC	3 cut(s)	194, 375, 376
ClaI	ATCGAT	1 cut(s)	188
Csp6I	GTAC	2 cut(s)	160, 364
CviQI	GTAC	2 cut(s)	160, 364
DdeI	CTNAG	2 cut(s)	109, 353
DpnI	GATC	2 cut(s)	191, 206
DpnII	GATC	2 cut(s)	189, 204
DraIII	CACNNNGTG	1 cut(s)	61
EaeI	YGGCCR	1 cut(s)	382
Ecl136II	GAGCTC	1 cut(s)	322
Eco130I	CCWWGG	2 cut(s)	166, 290
Eco24I	GRGCYC	2 cut(s)	324, 379
Eco31I	GGTCTC	1 cut(s)	346
Eco53kI	GAGCTC	1 cut(s)	322
EcoICRI	GAGCTC	1 cut(s)	322
EcoO109I	RGGNCCY	1 cut(s)	376
EcoRII	CCWGG	2 cut(s)	49, 379
EcoT14I	CCWWGG	2 cut(s)	166, 290
EcoT38I	GRGCYC	2 cut(s)	324, 379
ErhI	CCWWGG	2 cut(s)	166, 290
FaiI	YATR	6 cut(s)	20, 29, 60, 249, 254, 408
FaqI	GGGAC	2 cut(s)	238, 342
FblI	GTMKAC	1 cut(s)	19
Fnu4HI	GCNGC	1 cut(s)	197
FriOI	GRGCYC	2 cut(s)	324, 379
Fsp4HI	GCNGC	1 cut(s)	197
FspBI	CTAG	3 cut(s)	23, 200, 333
GluI	GCNGC	1 cut(s)	197
GsaI	CCCAGC	1 cut(s)	225
HaeIII	GGCC	4 cut(s)	54, 196, 377, 384
HindIII	AAGCTT	1 cut(s)	256
HinfI	GANTC	1 cut(s)	143
Hpy166II	GTNNAC	2 cut(s)	20, 160
Hpy188III	TCNNGA	2 cut(s)	208, 325
Hpy8I	GTNNAC	2 cut(s)	20, 160
HpyCH4III	ACNGT	2 cut(s)	9, 155
HpyCH4V	TGCA	3 cut(s)	4, 308, 399
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	2 cut(s)	109, 353
Kzo9I	GATC	2 cut(s)	189, 204
LmnI	GCTCC	2 cut(s)	73, 263
LpnPI	CCDG	7 cut(s)	36, 55, 63, 203, 207, 366, 393
MaeI	CTAG	3 cut(s)	23, 200, 333
MaeIII	GTNAC	1 cut(s)	144
MalI	GATC	2 cut(s)	191, 206
MboI	GATC	2 cut(s)	189, 204
MhlI	GDGCHC	2 cut(s)	324, 379
MlsI	TGGCCA	1 cut(s)	384
MluCI	AATT	1 cut(s)	45
MluNI	TGGCCA	1 cut(s)	384
MlyI	GAGTC	1 cut(s)	152
MmeI	TCCRAC	1 cut(s)	204
MnlI	CCTC	4 cut(s)	112, 118, 133, 362
Mox20I	TGGCCA	1 cut(s)	384
MscI	TGGCCA	1 cut(s)	384
MseI	TTAA	1 cut(s)	273
Msp20I	TGGCCA	1 cut(s)	384
MspR9I	CCNGG	2 cut(s)	51, 381
MvaI	CCWGG	2 cut(s)	51, 381
MwoI	GCNNNNNNNGC	1 cut(s)	10
NdeII	GATC	2 cut(s)	189, 204
NlaIV	GGNNCC	2 cut(s)	377, 378
NmuCI	GTSAC	1 cut(s)	144
PkrI	GCNGC	1 cut(s)	198
Ple19I	CGATCG	1 cut(s)	192
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
Psp124BI	GAGCTC	1 cut(s)	324
Psp6I	CCWGG	2 cut(s)	49, 379
PspFI	CCCAGC	1 cut(s)	221
PspGI	CCWGG	2 cut(s)	49, 379
PspN4I	GGNNCC	2 cut(s)	377, 378
PspOMI	GGGCCC	1 cut(s)	375
PspPI	GGNCC	3 cut(s)	194, 375, 376
PvuI	CGATCG	1 cut(s)	192
RsaI	GTAC	2 cut(s)	161, 365
RsaNI	GTAC	2 cut(s)	160, 364
SacI	GAGCTC	1 cut(s)	324
SaqAI	TTAA	1 cut(s)	273
SatI	GCNGC	1 cut(s)	197
Sau3AI	GATC	2 cut(s)	189, 204
Sau96I	GGNCC	3 cut(s)	194, 375, 376
SchI	GAGTC	1 cut(s)	152
ScrFI	CCNGG	2 cut(s)	51, 381
SduI	GDGCHC	2 cut(s)	324, 379
SetI	ASST	8 cut(s)	28, 78, 240, 260, 268, 296, 324, 354
Sse9I	AATT	1 cut(s)	45
SsiI	CCGC	2 cut(s)	163, 197
SspMI	CTAG	3 cut(s)	23, 200, 333
SstI	GAGCTC	1 cut(s)	324
StyD4I	CCNGG	2 cut(s)	49, 379
StyI	CCWWGG	2 cut(s)	166, 290
TaaI	ACNGT	2 cut(s)	9, 155
TaqI	TCGA	1 cut(s)	188
TasI	AATT	1 cut(s)	45
TauI	GCSGC	1 cut(s)	199
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TscAI	CASTG	2 cut(s)	117, 160
TseFI	GTSAC	1 cut(s)	144
Tsp45I	GTSAC	1 cut(s)	144
TspRI	CASTG	2 cut(s)	117, 160
XmiI	GTMKAC	1 cut(s)	19
XspI	CTAG	3 cut(s)	23, 200, 333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.