Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003022.1

Orthogroup ID

OG0021398

Physical Location & Seq

Genomic Coordinates Forward (+)

16720 .. 17001

Gene Structure 282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003022.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

atgcaactgtggcaaagtacactagctatgttgacactttcaacaattccaggccactatgtgcttttctgggagcttcgcctaaatggctcaactcctatcccaccctcagtgtttgaggactgttgctttgccattgaggagtcactcaatagtgtgtaccgccaaggaagagtctccaacaaatcgatcgggccactggagatcaagattgttcaggctgggacttttgacaagctcatcaactatgccataagcttgggagcttccattaaccaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006790 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009403 GO:0009404 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009653 GO:0009700 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009826 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010120 GO:0010252 GO:0010279 GO:0016043 GO:0016049 GO:0016874 GO:0016879 GO:0016881 GO:0018130 GO:0019222 GO:0019438 GO:0019748 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032870 GO:0032989 GO:0034641 GO:0040007 GO:0042221 GO:0042430 GO:0042435 GO:0042592 GO:0042762 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0046217 GO:0046483 GO:0048518 GO:0048522 GO:0048589 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051176 GO:0051716 GO:0052314 GO:0052315 GO:0052317 GO:0052318 GO:0052319 GO:0052320 GO:0052322 GO:0060560 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0071840 GO:1900376 GO:1900378 GO:1901182 GO:1901183 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

GH3

Protein Analysis

93

Amino Acids

10.33

Weight (kDa)

5.64

Isoelectric Point (pI)

39.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021398)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0412851
rosa_multiflora	Rmu_sc0003022.1_g000006
rosa_samantha	Rh4BG176300 Rh4CG187000 Rh4DG173000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	163
AdeI	CACNNNGTG	1 cut(s)	61
AfaI	GTAC	2 cut(s)	19, 161
AgsI	TTSAA	1 cut(s)	42
AjnI	CCWGG	1 cut(s)	49
AluBI	AGCT	5 cut(s)	26, 76, 238, 258, 266
AluI	AGCT	5 cut(s)	26, 76, 238, 258, 266
Alw26I	GTCTC	1 cut(s)	181
AoxI	GGCC	2 cut(s)	52, 194
ArsI	GACNNNNNNTTYG	2 cut(s)	113, 145
AspS9I	GGNCC	1 cut(s)	194
BciT130I	CCWGG	1 cut(s)	51
BcoDI	GTCTC	1 cut(s)	181
BfaI	CTAG	1 cut(s)	23
BglI	GCCNNNNNGGC	1 cut(s)	87
Bme1390I	CCNGG	1 cut(s)	51
BmgT120I	GGNCC	1 cut(s)	194
BmrFI	CCNGG	1 cut(s)	51
BpmI	CTGGAG	1 cut(s)	221
Bsa29I	ATCGAT	1 cut(s)	188
BsaJI	CCNNGG	1 cut(s)	166
Bse1I	ACTGG	1 cut(s)	204
BseBI	CCWGG	1 cut(s)	51
BseCI	ATCGAT	1 cut(s)	188
BseDI	CCNNGG	1 cut(s)	166
BseMII	CTCAG	1 cut(s)	123
BseNI	ACTGG	1 cut(s)	204
BseRI	GAGGAG	1 cut(s)	155
BseYI	CCCAGC	1 cut(s)	221
Bsh1285I	CGRYCG	1 cut(s)	192
BshFI	GGCC	2 cut(s)	54, 196
BshVI	ATCGAT	1 cut(s)	188
BsiEI	CGRYCG	1 cut(s)	192
BslFI	GGGAC	1 cut(s)	238
BsmAI	GTCTC	1 cut(s)	181
BsmFI	GGGAC	1 cut(s)	238
BsnI	GGCC	2 cut(s)	54, 196
Bsp143I	GATC	2 cut(s)	189, 204
BspACI	CCGC	1 cut(s)	163
BspANI	GGCC	2 cut(s)	54, 196
BspCNI	CTCAG	1 cut(s)	122
BspDI	ATCGAT	1 cut(s)	188
BsrI	ACTGG	1 cut(s)	204
BssECI	CCNNGG	1 cut(s)	166
BssMI	GATC	2 cut(s)	189, 204
BssT1I	CCWWGG	1 cut(s)	166
Bst2UI	CCWGG	1 cut(s)	51
Bst4CI	ACNGT	2 cut(s)	9, 125
Bst6I	CTCTTC	1 cut(s)	166
BstDEI	CTNAG	1 cut(s)	109
BstKTI	GATC	2 cut(s)	192, 207
BstMAI	GTCTC	1 cut(s)	181
BstMBI	GATC	2 cut(s)	189, 204
BstMCI	CGRYCG	1 cut(s)	192
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 87
BstNI	CCWGG	1 cut(s)	51
BstSCI	CCNGG	1 cut(s)	49
BstXI	CCANNNNNNTGG	1 cut(s)	259
Bsu15I	ATCGAT	1 cut(s)	188
BsuRI	GGCC	2 cut(s)	54, 196
BsuTUI	ATCGAT	1 cut(s)	188
BtsIMutI	CAGTG	2 cut(s)	117, 197
Cfr13I	GGNCC	1 cut(s)	194
ClaI	ATCGAT	1 cut(s)	188
Csp6I	GTAC	2 cut(s)	18, 160
CviJI	RGCY	9 cut(s)	26, 54, 76, 90, 196, 221, 238, 258, 266
CviKI_1	RGCY	9 cut(s)	26, 54, 76, 90, 196, 221, 238, 258, 266
CviQI	GTAC	2 cut(s)	18, 160
DdeI	CTNAG	1 cut(s)	109
DpnI	GATC	2 cut(s)	191, 206
DpnII	GATC	2 cut(s)	189, 204
DraIII	CACNNNGTG	1 cut(s)	61
Eam1104I	CTCTTC	1 cut(s)	166
EarI	CTCTTC	1 cut(s)	166
Eco130I	CCWWGG	1 cut(s)	166
EcoRII	CCWGG	1 cut(s)	49
EcoT14I	CCWWGG	1 cut(s)	166
ErhI	CCWWGG	1 cut(s)	166
FaiI	YATR	4 cut(s)	29, 60, 249, 254
FaqI	GGGAC	1 cut(s)	238
FspBI	CTAG	1 cut(s)	23
GsaI	CCCAGC	1 cut(s)	225
GsuI	CTGGAG	1 cut(s)	221
HaeIII	GGCC	2 cut(s)	54, 196
HincII	GTYRAC	1 cut(s)	33
HindII	GTYRAC	1 cut(s)	33
HindIII	AAGCTT	1 cut(s)	256
HinfI	GANTC	2 cut(s)	143, 174
Hpy166II	GTNNAC	3 cut(s)	20, 33, 160
Hpy188III	TCNNGA	1 cut(s)	208
Hpy8I	GTNNAC	3 cut(s)	20, 33, 160
HpyCH4III	ACNGT	2 cut(s)	9, 125
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 87
HpyF3I	CTNAG	1 cut(s)	109
Kzo9I	GATC	2 cut(s)	189, 204
LmnI	GCTCC	2 cut(s)	73, 263
LpnPI	CCDG	6 cut(s)	36, 55, 63, 185, 203, 207
MaeI	CTAG	1 cut(s)	23
MaeIII	GTNAC	1 cut(s)	144
MalI	GATC	2 cut(s)	191, 206
MboI	GATC	2 cut(s)	189, 204
MboII	GAAGA	1 cut(s)	183
MluCI	AATT	1 cut(s)	45
MlyI	GAGTC	2 cut(s)	152, 183
MmeI	TCCRAC	1 cut(s)	204
MnlI	CCTC	3 cut(s)	112, 118, 133
MseI	TTAA	1 cut(s)	273
MspR9I	CCNGG	1 cut(s)	51
MvaI	CCWGG	1 cut(s)	51
MwoI	GCNNNNNNNGC	2 cut(s)	10, 87
NdeII	GATC	2 cut(s)	189, 204
NmuCI	GTSAC	1 cut(s)	144
Ple19I	CGATCG	1 cut(s)	192
PleI	GAGTC	2 cut(s)	151, 182
PpsI	GAGTC	2 cut(s)	151, 182
Psp6I	CCWGG	1 cut(s)	49
PspFI	CCCAGC	1 cut(s)	221
PspGI	CCWGG	1 cut(s)	49
PspPI	GGNCC	1 cut(s)	194
PvuI	CGATCG	1 cut(s)	192
RsaI	GTAC	2 cut(s)	19, 161
RsaNI	GTAC	2 cut(s)	18, 160
SaqAI	TTAA	1 cut(s)	273
Sau3AI	GATC	2 cut(s)	189, 204
Sau96I	GGNCC	1 cut(s)	194
SchI	GAGTC	2 cut(s)	152, 183
ScrFI	CCNGG	1 cut(s)	51
SetI	ASST	5 cut(s)	28, 78, 240, 260, 268
Sse9I	AATT	1 cut(s)	45
SsiI	CCGC	1 cut(s)	163
SspMI	CTAG	1 cut(s)	23
StyD4I	CCNGG	1 cut(s)	49
StyI	CCWWGG	1 cut(s)	166
TaaI	ACNGT	2 cut(s)	9, 125
TaqI	TCGA	1 cut(s)	188
TasI	AATT	1 cut(s)	45
TatI	WGTACW	1 cut(s)	17
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TscAI	CASTG	2 cut(s)	117, 204
TseFI	GTSAC	1 cut(s)	144
Tsp45I	GTSAC	1 cut(s)	144
TspRI	CASTG	2 cut(s)	117, 204
XspI	CTAG	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.