Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0021398

Physical Location & Seq

Genomic Coordinates Forward (+)

34458858 .. 34462964

Gene Structure 4107 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG173000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGAAACCCTCATCAGAATCCAGAAAATTGATAGGCCACTATGTGCTTTTCTGGGAGCTTCGCCTAAATGGCTCAACTCCAATCCCACCCTCAGTGTTTGAGGACTGTTGCTTTGCCATTGAGGAGTCACTCAATAGTGTGTACCGCCAAGGAAGAGTCTCCAACAAATCGATCGGGCCACTGGAGATCAAGATTGTTCAGGCTGGGACTTTTGACAAGCTCATCAACTATGCCATAAGCTTGGGAGCTTCCATTAACCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006790 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009403 GO:0009404 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009653 GO:0009700 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009826 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010120 GO:0010252 GO:0010279 GO:0016043 GO:0016049 GO:0016874 GO:0016879 GO:0016881 GO:0018130 GO:0019222 GO:0019438 GO:0019748 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032870 GO:0032989 GO:0034641 GO:0040007 GO:0042221 GO:0042430 GO:0042435 GO:0042592 GO:0042762 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0046217 GO:0046483 GO:0048518 GO:0048522 GO:0048589 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051176 GO:0051716 GO:0052314 GO:0052315 GO:0052317 GO:0052318 GO:0052319 GO:0052320 GO:0052322 GO:0060560 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0071840 GO:1900376 GO:1900378 GO:1901182 GO:1901183 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

GH3

Protein Analysis

87

Amino Acids

9.67

Weight (kDa)

7.78

Isoelectric Point (pI)

44.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GH3_C	PF23572	11 - 87	2.4e-22	GH3 family C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Orthologous Genes (Group: OG0021398)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0412851
rosa_multiflora	Rmu_sc0003022.1_g000006
rosa_samantha	Rh4BG176300 Rh4CG187000 Rh4DG173000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	145
AdeI	CACNNNGTG	1 cut(s)	43
AfaI	GTAC	1 cut(s)	143
AluBI	AGCT	4 cut(s)	58, 220, 240, 248
AluI	AGCT	4 cut(s)	58, 220, 240, 248
Alw26I	GTCTC	1 cut(s)	163
AoxI	GGCC	2 cut(s)	34, 176
ArsI	GACNNNNNNTTYG	2 cut(s)	95, 127
AspS9I	GGNCC	1 cut(s)	176
BcoDI	GTCTC	1 cut(s)	163
BglI	GCCNNNNNGGC	1 cut(s)	69
BmgT120I	GGNCC	1 cut(s)	176
BpmI	CTGGAG	1 cut(s)	203
Bsa29I	ATCGAT	1 cut(s)	170
BsaJI	CCNNGG	1 cut(s)	148
Bse1I	ACTGG	1 cut(s)	186
BseCI	ATCGAT	1 cut(s)	170
BseDI	CCNNGG	1 cut(s)	148
BseMII	CTCAG	1 cut(s)	105
BseNI	ACTGG	1 cut(s)	186
BseRI	GAGGAG	1 cut(s)	137
BseYI	CCCAGC	1 cut(s)	203
Bsh1285I	CGRYCG	1 cut(s)	174
BshFI	GGCC	2 cut(s)	36, 178
BshVI	ATCGAT	1 cut(s)	170
BsiEI	CGRYCG	1 cut(s)	174
BslFI	GGGAC	1 cut(s)	220
BsmAI	GTCTC	1 cut(s)	163
BsmFI	GGGAC	1 cut(s)	220
BsnI	GGCC	2 cut(s)	36, 178
Bsp143I	GATC	2 cut(s)	171, 186
BspACI	CCGC	1 cut(s)	145
BspANI	GGCC	2 cut(s)	36, 178
BspCNI	CTCAG	1 cut(s)	104
BspDI	ATCGAT	1 cut(s)	170
BsrI	ACTGG	1 cut(s)	186
BssECI	CCNNGG	1 cut(s)	148
BssMI	GATC	2 cut(s)	171, 186
BssT1I	CCWWGG	1 cut(s)	148
Bst4CI	ACNGT	1 cut(s)	107
Bst6I	CTCTTC	1 cut(s)	148
BstDEI	CTNAG	1 cut(s)	91
BstKTI	GATC	2 cut(s)	174, 189
BstMAI	GTCTC	1 cut(s)	163
BstMBI	GATC	2 cut(s)	171, 186
BstMCI	CGRYCG	1 cut(s)	174
BstMWI	GCNNNNNNNGC	1 cut(s)	69
BstXI	CCANNNNNNTGG	1 cut(s)	241
Bsu15I	ATCGAT	1 cut(s)	170
BsuRI	GGCC	2 cut(s)	36, 178
BsuTUI	ATCGAT	1 cut(s)	170
BtsIMutI	CAGTG	2 cut(s)	99, 179
Cfr13I	GGNCC	1 cut(s)	176
ClaI	ATCGAT	1 cut(s)	170
Csp6I	GTAC	1 cut(s)	142
CviJI	RGCY	8 cut(s)	36, 58, 72, 178, 203, 220, 240, 248
CviKI_1	RGCY	8 cut(s)	36, 58, 72, 178, 203, 220, 240, 248
CviQI	GTAC	1 cut(s)	142
DdeI	CTNAG	1 cut(s)	91
DpnI	GATC	2 cut(s)	173, 188
DpnII	GATC	2 cut(s)	171, 186
DraIII	CACNNNGTG	1 cut(s)	43
Eam1104I	CTCTTC	1 cut(s)	148
EarI	CTCTTC	1 cut(s)	148
Eco130I	CCWWGG	1 cut(s)	148
EcoT14I	CCWWGG	1 cut(s)	148
ErhI	CCWWGG	1 cut(s)	148
FaiI	YATR	3 cut(s)	42, 231, 236
FaqI	GGGAC	1 cut(s)	220
GsaI	CCCAGC	1 cut(s)	207
GsuI	CTGGAG	1 cut(s)	203
HaeIII	GGCC	2 cut(s)	36, 178
HindIII	AAGCTT	1 cut(s)	238
HinfI	GANTC	3 cut(s)	17, 125, 156
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188I	TCNGA	1 cut(s)	16
Hpy188III	TCNNGA	2 cut(s)	21, 190
Hpy8I	GTNNAC	1 cut(s)	142
HpyCH4III	ACNGT	1 cut(s)	107
HpyF10VI	GCNNNNNNNGC	1 cut(s)	69
HpyF3I	CTNAG	1 cut(s)	91
Kzo9I	GATC	2 cut(s)	171, 186
LmnI	GCTCC	2 cut(s)	55, 245
LpnPI	CCDG	5 cut(s)	34, 37, 167, 185, 189
MaeIII	GTNAC	1 cut(s)	126
MalI	GATC	2 cut(s)	173, 188
MboI	GATC	2 cut(s)	171, 186
MboII	GAAGA	1 cut(s)	165
MluCI	AATT	1 cut(s)	26
MlyI	GAGTC	2 cut(s)	134, 165
MmeI	TCCRAC	1 cut(s)	186
MnlI	CCTC	4 cut(s)	19, 94, 100, 115
MseI	TTAA	1 cut(s)	255
MwoI	GCNNNNNNNGC	1 cut(s)	69
NdeII	GATC	2 cut(s)	171, 186
NmuCI	GTSAC	1 cut(s)	126
PfeI	GAWTC	1 cut(s)	17
Ple19I	CGATCG	1 cut(s)	174
PleI	GAGTC	2 cut(s)	133, 164
PpsI	GAGTC	2 cut(s)	133, 164
PspFI	CCCAGC	1 cut(s)	203
PspPI	GGNCC	1 cut(s)	176
PvuI	CGATCG	1 cut(s)	174
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
SaqAI	TTAA	1 cut(s)	255
Sau3AI	GATC	2 cut(s)	171, 186
Sau96I	GGNCC	1 cut(s)	176
SchI	GAGTC	2 cut(s)	134, 165
SetI	ASST	4 cut(s)	60, 222, 242, 250
Sse9I	AATT	1 cut(s)	26
SsiI	CCGC	1 cut(s)	145
StyI	CCWWGG	1 cut(s)	148
TaaI	ACNGT	1 cut(s)	107
TaqI	TCGA	1 cut(s)	170
TasI	AATT	1 cut(s)	26
TfiI	GAWTC	1 cut(s)	17
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TscAI	CASTG	2 cut(s)	99, 186
TseFI	GTSAC	1 cut(s)	126
Tsp45I	GTSAC	1 cut(s)	126
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	99, 186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.