Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0021398

Physical Location & Seq

Genomic Coordinates Forward (+)

40358175 .. 40358978

Gene Structure 804 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG187000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGCTGACACTTTCAACAATTCCAGGCCACTATGTGCTTTTCTGGGAGCTTCTCCTAAATGGCTCAACTCCAATCCCACCCTCAGTGTTTGAGGACTACTGCTTTGTCATTGAGGAGTCACTCAACAGTGTGTACCGCCAAGGCAAAGTCTCCAACAAATCGATCGGGCCGCTAGAGATCAAGATTGTTCAGGCTGGGACTTTTGACAAGCTCATCATCTATGCCATAAGCTTGGGAGCTTCCATTAACCAATACAAGACCCCAAGGTGTGTGAAGTTTGCACCCATTGTTGAGCTCTTGAACTCTAGGGTGGTCTCAAACTACCTCAGTCCCAAGTACCCCAAGTGGGCCCCTAGCCACAAGCAATGGTGCAAAAACTATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006790 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009403 GO:0009404 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009653 GO:0009700 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009826 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010120 GO:0010252 GO:0010279 GO:0016043 GO:0016049 GO:0016874 GO:0016879 GO:0016881 GO:0018130 GO:0019222 GO:0019438 GO:0019748 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032870 GO:0032989 GO:0034641 GO:0040007 GO:0042221 GO:0042430 GO:0042435 GO:0042592 GO:0042762 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0046217 GO:0046483 GO:0048518 GO:0048522 GO:0048589 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051176 GO:0051716 GO:0052314 GO:0052315 GO:0052317 GO:0052318 GO:0052319 GO:0052320 GO:0052322 GO:0060560 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0071840 GO:1900376 GO:1900378 GO:1901182 GO:1901183 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

GH3

Protein Analysis

128

Amino Acids

14.53

Weight (kDa)

8.98

Isoelectric Point (pI)

36.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GH3_C	PF23572	4 - 93	4.6e-27	GH3 family C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0021398)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0412851
rosa_multiflora	Rmu_sc0003022.1_g000006
rosa_samantha	Rh4BG176300 Rh4CG187000 Rh4DG173000

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	136, 170
AdeI	CACNNNGTG	1 cut(s)	34
AfaI	GTAC	2 cut(s)	134, 338
AfiI	CCNNNNNNNGG	1 cut(s)	346
AgsI	TTSAA	2 cut(s)	15, 301
AjnI	CCWGG	1 cut(s)	22
AluBI	AGCT	5 cut(s)	49, 211, 231, 239, 295
AluI	AGCT	5 cut(s)	49, 211, 231, 239, 295
Alw21I	GWGCWC	1 cut(s)	297
Alw26I	GTCTC	2 cut(s)	154, 319
AoxI	GGCC	3 cut(s)	25, 167, 348
ApaI	GGGCCC	1 cut(s)	352
ArsI	GACNNNNNNTTYG	2 cut(s)	86, 118
AspS9I	GGNCC	3 cut(s)	167, 348, 349
BaeGI	GKGCMC	1 cut(s)	352
BanII	GRGCYC	2 cut(s)	297, 352
Bbv12I	GWGCWC	1 cut(s)	297
BciT130I	CCWGG	1 cut(s)	24
BcoDI	GTCTC	2 cut(s)	154, 319
BfaI	CTAG	3 cut(s)	173, 306, 354
BisI	GCNGC	1 cut(s)	170
BlsI	GCNGC	1 cut(s)	171
Bme1390I	CCNGG	1 cut(s)	24
BmgT120I	GGNCC	3 cut(s)	167, 348, 349
BmiI	GGNNCC	2 cut(s)	350, 351
BmrFI	CCNGG	1 cut(s)	24
Bsa29I	ATCGAT	1 cut(s)	161
BsaI	GGTCTC	1 cut(s)	319
BsaJI	CCNNGG	2 cut(s)	139, 263
Bsc4I	CCNNNNNNNGG	1 cut(s)	346
Bse3DI	GCAATG	1 cut(s)	371
BseBI	CCWGG	1 cut(s)	24
BseCI	ATCGAT	1 cut(s)	161
BseDI	CCNNGG	2 cut(s)	139, 263
BseLI	CCNNNNNNNGG	1 cut(s)	346
BseMI	GCAATG	1 cut(s)	371
BseMII	CTCAG	2 cut(s)	96, 340
BseRI	GAGGAG	1 cut(s)	128
BseSI	GKGCMC	1 cut(s)	352
BseYI	CCCAGC	1 cut(s)	194
Bsh1285I	CGRYCG	1 cut(s)	165
BshFI	GGCC	3 cut(s)	27, 169, 350
BshVI	ATCGAT	1 cut(s)	161
BsiEI	CGRYCG	1 cut(s)	165
BsiHKAI	GWGCWC	1 cut(s)	297
BslFI	GGGAC	2 cut(s)	211, 315
BslI	CCNNNNNNNGG	1 cut(s)	346
BsmAI	GTCTC	2 cut(s)	154, 319
BsmFI	GGGAC	2 cut(s)	211, 315
BsnI	GGCC	3 cut(s)	27, 169, 350
Bso31I	GGTCTC	1 cut(s)	319
Bsp120I	GGGCCC	1 cut(s)	348
Bsp1286I	GDGCHC	2 cut(s)	297, 352
Bsp143I	GATC	2 cut(s)	162, 177
BspACI	CCGC	2 cut(s)	136, 170
BspANI	GGCC	3 cut(s)	27, 169, 350
BspCNI	CTCAG	2 cut(s)	95, 339
BspDI	ATCGAT	1 cut(s)	161
BspLI	GGNNCC	2 cut(s)	350, 351
BspTNI	GGTCTC	1 cut(s)	319
BsrDI	GCAATG	1 cut(s)	371
BssECI	CCNNGG	2 cut(s)	139, 263
BssMI	GATC	2 cut(s)	162, 177
BssT1I	CCWWGG	2 cut(s)	139, 263
Bst2UI	CCWGG	1 cut(s)	24
Bst4CI	ACNGT	1 cut(s)	128
BstDEI	CTNAG	2 cut(s)	82, 326
BstKTI	GATC	2 cut(s)	165, 180
BstMAI	GTCTC	2 cut(s)	154, 319
BstMBI	GATC	2 cut(s)	162, 177
BstMCI	CGRYCG	1 cut(s)	165
BstNI	CCWGG	1 cut(s)	24
BstSCI	CCNGG	1 cut(s)	22
BstSLI	GKGCMC	1 cut(s)	352
BstXI	CCANNNNNNTGG	1 cut(s)	232
Bsu15I	ATCGAT	1 cut(s)	161
BsuRI	GGCC	3 cut(s)	27, 169, 350
BsuTUI	ATCGAT	1 cut(s)	161
BtsIMutI	CAGTG	2 cut(s)	90, 133
Cfr13I	GGNCC	3 cut(s)	167, 348, 349
ClaI	ATCGAT	1 cut(s)	161
Csp6I	GTAC	2 cut(s)	133, 337
CviQI	GTAC	2 cut(s)	133, 337
DdeI	CTNAG	2 cut(s)	82, 326
DpnI	GATC	2 cut(s)	164, 179
DpnII	GATC	2 cut(s)	162, 177
DraIII	CACNNNGTG	1 cut(s)	34
Ecl136II	GAGCTC	1 cut(s)	295
Eco130I	CCWWGG	2 cut(s)	139, 263
Eco24I	GRGCYC	2 cut(s)	297, 352
Eco31I	GGTCTC	1 cut(s)	319
Eco53kI	GAGCTC	1 cut(s)	295
EcoICRI	GAGCTC	1 cut(s)	295
EcoO109I	RGGNCCY	1 cut(s)	349
EcoRII	CCWGG	1 cut(s)	22
EcoT14I	CCWWGG	2 cut(s)	139, 263
EcoT38I	GRGCYC	2 cut(s)	297, 352
ErhI	CCWWGG	2 cut(s)	139, 263
FaiI	YATR	4 cut(s)	33, 222, 227, 381
FaqI	GGGAC	2 cut(s)	211, 315
Fnu4HI	GCNGC	1 cut(s)	170
FriOI	GRGCYC	2 cut(s)	297, 352
Fsp4HI	GCNGC	1 cut(s)	170
FspBI	CTAG	3 cut(s)	173, 306, 354
GluI	GCNGC	1 cut(s)	170
GsaI	CCCAGC	1 cut(s)	198
HaeIII	GGCC	3 cut(s)	27, 169, 350
HindIII	AAGCTT	1 cut(s)	229
HinfI	GANTC	1 cut(s)	116
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188III	TCNNGA	2 cut(s)	181, 298
Hpy8I	GTNNAC	1 cut(s)	133
HpyCH4III	ACNGT	1 cut(s)	128
HpyCH4V	TGCA	2 cut(s)	281, 372
HpyF3I	CTNAG	2 cut(s)	82, 326
Kzo9I	GATC	2 cut(s)	162, 177
LmnI	GCTCC	2 cut(s)	46, 236
LpnPI	CCDG	5 cut(s)	9, 28, 36, 176, 180
MaeI	CTAG	3 cut(s)	173, 306, 354
MaeIII	GTNAC	1 cut(s)	117
MalI	GATC	2 cut(s)	164, 179
MboI	GATC	2 cut(s)	162, 177
MhlI	GDGCHC	2 cut(s)	297, 352
MluCI	AATT	1 cut(s)	18
MlyI	GAGTC	1 cut(s)	125
MmeI	TCCRAC	1 cut(s)	177
MnlI	CCTC	4 cut(s)	85, 91, 106, 335
MseI	TTAA	1 cut(s)	246
MspR9I	CCNGG	1 cut(s)	24
MvaI	CCWGG	1 cut(s)	24
NdeII	GATC	2 cut(s)	162, 177
NlaIV	GGNNCC	2 cut(s)	350, 351
NmuCI	GTSAC	1 cut(s)	117
PkrI	GCNGC	1 cut(s)	171
Ple19I	CGATCG	1 cut(s)	165
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
Psp124BI	GAGCTC	1 cut(s)	297
Psp6I	CCWGG	1 cut(s)	22
PspFI	CCCAGC	1 cut(s)	194
PspGI	CCWGG	1 cut(s)	22
PspN4I	GGNNCC	2 cut(s)	350, 351
PspOMI	GGGCCC	1 cut(s)	348
PspPI	GGNCC	3 cut(s)	167, 348, 349
PvuI	CGATCG	1 cut(s)	165
RsaI	GTAC	2 cut(s)	134, 338
RsaNI	GTAC	2 cut(s)	133, 337
SacI	GAGCTC	1 cut(s)	297
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	1 cut(s)	170
Sau3AI	GATC	2 cut(s)	162, 177
Sau96I	GGNCC	3 cut(s)	167, 348, 349
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	1 cut(s)	24
SduI	GDGCHC	2 cut(s)	297, 352
SetI	ASST	7 cut(s)	51, 213, 233, 241, 269, 297, 327
Sse9I	AATT	1 cut(s)	18
SsiI	CCGC	2 cut(s)	136, 170
SspMI	CTAG	3 cut(s)	173, 306, 354
SstI	GAGCTC	1 cut(s)	297
StyD4I	CCNGG	1 cut(s)	22
StyI	CCWWGG	2 cut(s)	139, 263
TaaI	ACNGT	1 cut(s)	128
TaqI	TCGA	1 cut(s)	161
TasI	AATT	1 cut(s)	18
TauI	GCSGC	1 cut(s)	172
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TscAI	CASTG	2 cut(s)	90, 133
TseFI	GTSAC	1 cut(s)	117
Tsp45I	GTSAC	1 cut(s)	117
TspRI	CASTG	2 cut(s)	90, 133
XspI	CTAG	3 cut(s)	173, 306, 354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.