RchiOBHm_Chr4g0427101

Catalyzes the formation of S-adenosylmethionine from methionine and ATP

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
52371012 .. 52372703
1692 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 978 bp
ATGGCTCTTGAGACCTTCTTGTTCACCTCTGAGTCCGTCAATGAGGGTCACCCAGACAAGCTCTGCGACCAGATCTCCGACGCCGTTCTCGACGCCTGCCTAGCTCAGGACGCCGACAGCAAGGTGGCTTGCGAGACCTGCACCAAGACCAACATGGTCATGGTGTTCGGTGAGATCACCACCAAGGCTAATGTGGACTACGAGAAGATCGTCCGTGACACTTGCCGCAACATTGGGTTCGTGTCGGCCGACGTGGGTCTTGATGCCGATAACTGCAAGGTGCTCGTCAACATTGAGCAGCAGAGCCCTGATATTGCCCAAGGTGTCCATGGCCATTTGACCAAGAGGCCCGAGGAGATTGGAGCTGGTGACCAAGGTCACATGTTTGGCTATGCCACTGATGAGACCCCAGAGTTGATGCCTCTCAGCCATGTGCTCGCAACCAAGCTCGGTGCTAAGCTCACCGAAGTTCGCAAGAATGGTACTTGCGCATGGTTGAGGCCTGATGGCAAGACCCAAGTCACCGTTGAGTACTTCAATGAGAACGGTGCTATGGTTCCAATCCGTGTCCACACTGTCCTAATTTCGACCCAGCATGATGAAACCGTGACCAACGATGAGATTGCTGCTGATCTGAAGGAGCATGTGATCAAGCCTGTGATCCCAGAGAAGTACCTGGATGAGAAGACCATCTTCCACTTGAACCCATCTGGCCGATTCGTCATTGGAGGACCTCATGGTGATGCTGGTCTCACCGGCCGCAAGATCATCATCGACACCTACGGAGGCTGGGGTGCTCACGGAGGTGGTGCCTTCTCCGGCAAGGACCCAACCAAGGTTGACAGGAGTGGAGCCTACATTGTGAGGCAGGCAGCCAAGTCCATTGTTGCCAGTGGACTTGCAAGGAGCCACTGTCCGTGTTTGTTGACTCTTACGGCACCGGAAAGATTCCCGACAAGGAGATCCTCAAGATTGTGA

Protein Analysis

325

Amino Acids

35.21

Weight (kDa)

5.74

Isoelectric Point (pI)

33.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S-AdoMet_synt_N PF00438 6 - 103 4.8e-43 S-adenosylmethionine synthetase, N-terminal domain
S-AdoMet_synt_M PF02772 119 - 240 1.9e-47 S-adenosylmethionine synthetase, central domain
S-AdoMet_synt_C PF02773 242 - 303 2.3e-30 S-adenosylmethionine synthetase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 490
Acc36I ACCTGC 1 cut(s) 146
AccB1I GGYRCC 2 cut(s) 809, 937
AciI CCGC 2 cut(s) 226, 760
AclWI GGATC 2 cut(s) 655, 957
AcoI YGGCCR 4 cut(s) 246, 331, 712, 757
AcuI CTGAAG 1 cut(s) 656
AcyI GRCGYC 3 cut(s) 81, 93, 111
AfaI GTAC 3 cut(s) 484, 533, 674
AfiI CCNNNNNNNGG 2 cut(s) 106, 835
AflIII ACRYGT 1 cut(s) 381
AgsI TTSAA 2 cut(s) 538, 703
AjiI CACGTC 1 cut(s) 253
AjnI CCWGG 1 cut(s) 675
AleI CACNNNNGTG 1 cut(s) 804
AluBI AGCT 5 cut(s) 61, 104, 365, 448, 460
AluI AGCT 5 cut(s) 61, 104, 365, 448, 460
Alw21I GWGCWC 3 cut(s) 285, 438, 799
Alw26I GTCTC 4 cut(s) 5, 128, 398, 755
AlwI GGATC 2 cut(s) 655, 957
Ama87I CYCGRG 1 cut(s) 350
AoxI GGCC 6 cut(s) 246, 331, 347, 500, 712, 757
ApeKI GCWGC 3 cut(s) 298, 626, 872
AspLEI GCGC 1 cut(s) 491
AspS9I GGNCC 3 cut(s) 348, 731, 826
AsuHPI GGTGA 9 cut(s) 16, 41, 169, 182, 380, 454, 514, 745, 752
AvaI CYCGRG 1 cut(s) 350
AvaII GGWCC 2 cut(s) 731, 826
BalI TGGCCA 1 cut(s) 333
BanI GGYRCC 2 cut(s) 809, 937
BanII GRGCYC 1 cut(s) 308
BbsI GAAGAC 1 cut(s) 692
Bbv12I GWGCWC 3 cut(s) 285, 438, 799
BbvI GCAGC 3 cut(s) 310, 613, 884
BccI CCATC 3 cut(s) 500, 698, 715
BceAI ACGGC 2 cut(s) 68, 951
BcgI CGANNNNNNTGC 4 cut(s) 265, 299, 605, 639
BciT130I CCWGG 1 cut(s) 677
BclI TGATCA 1 cut(s) 648
BcoDI GTCTC 4 cut(s) 5, 128, 398, 755
BfaI CTAG 1 cut(s) 101
BfuAI ACCTGC 1 cut(s) 146
BglII AGATCT 1 cut(s) 72
BisI GCNGC 5 cut(s) 226, 299, 627, 760, 873
BlpI GCTNAGC 1 cut(s) 456
BlsI GCNGC 5 cut(s) 227, 300, 628, 761, 874
BmcAI AGTACT 1 cut(s) 533
Bme1390I CCNGG 1 cut(s) 677
Bme18I GGWCC 2 cut(s) 731, 826
BmeT110I CYCGRG 1 cut(s) 350
BmgBI CACGTC 1 cut(s) 253
BmgT120I GGNCC 3 cut(s) 348, 731, 826
BmiI GGNNCC 6 cut(s) 558, 811, 828, 853, 908, 939
BmrFI CCNGG 1 cut(s) 677
BmsI GCATC 3 cut(s) 253, 408, 733
BoxI GACNNNNGTC 3 cut(s) 255, 375, 518
BpiI GAAGAC 1 cut(s) 692
Bpu10I CCTNAGC 1 cut(s) 105
Bpu1102I GCTNAGC 1 cut(s) 456
BpuEI CTTGAG 2 cut(s) 29, 952
BsaBI GATNNNNATC 1 cut(s) 770
BsaHI GRCGYC 3 cut(s) 81, 93, 111
BsaI GGTCTC 4 cut(s) 5, 128, 398, 755
BsaJI CCNNGG 6 cut(s) 183, 319, 328, 351, 373, 834
BsaWI WCCGGW 1 cut(s) 940
BsaXI ACNNNNNCTCC 4 cut(s) 59, 89, 898, 928
Bsc4I CCNNNNNNNGG 2 cut(s) 106, 835
Bse118I RCCGGY 1 cut(s) 755
Bse1I ACTGG 1 cut(s) 891
Bse8I GATNNNNATC 1 cut(s) 770
BseBI CCWGG 1 cut(s) 677
BseDI CCNNGG 6 cut(s) 183, 319, 328, 351, 373, 834
BseGI GGATG 1 cut(s) 685
BseJI GATNNNNATC 1 cut(s) 770
BseLI CCNNNNNNNGG 2 cut(s) 106, 835
BseMII CTCAG 3 cut(s) 21, 119, 439
BseNI ACTGG 1 cut(s) 891
BseRI GAGGAG 1 cut(s) 368
BseX3I CGGCCG 2 cut(s) 246, 757
BseXI GCAGC 3 cut(s) 310, 613, 884
BseYI CCCAGC 2 cut(s) 591, 789
BsgI GTGCAG 1 cut(s) 124
Bsh1285I CGRYCG 2 cut(s) 249, 760
BshFI GGCC 6 cut(s) 248, 333, 349, 502, 714, 759
BshNI GGYRCC 2 cut(s) 809, 937
BsiEI CGRYCG 2 cut(s) 249, 760
BsiHKAI GWGCWC 3 cut(s) 285, 438, 799
BsiHKCI CYCGRG 1 cut(s) 350
BsiSI CCGG 3 cut(s) 756, 819, 941
BslI CCNNNNNNNGG 2 cut(s) 106, 835
BsmAI GTCTC 4 cut(s) 5, 128, 398, 755
BsnI GGCC 6 cut(s) 248, 333, 349, 502, 714, 759
Bso31I GGTCTC 4 cut(s) 5, 128, 398, 755
BsoBI CYCGRG 1 cut(s) 350
Bsp1286I GDGCHC 4 cut(s) 285, 308, 438, 799
Bsp143I GATC 8 cut(s) 72, 174, 207, 631, 648, 660, 765, 962
Bsp1720I GCTNAGC 1 cut(s) 456
Bsp19I CCATGG 1 cut(s) 328
BspACI CCGC 2 cut(s) 226, 760
BspANI GGCC 6 cut(s) 248, 333, 349, 502, 714, 759
BspCNI CTCAG 3 cut(s) 22, 118, 438
BspLI GGNNCC 6 cut(s) 558, 811, 828, 853, 908, 939
BspMI ACCTGC 1 cut(s) 146
BspPI GGATC 2 cut(s) 655, 957
BspT107I GGYRCC 2 cut(s) 809, 937
BspTNI GGTCTC 4 cut(s) 5, 128, 398, 755
BsrFI RCCGGY 1 cut(s) 755
BsrI ACTGG 1 cut(s) 891
BssAI RCCGGY 1 cut(s) 755
BssECI CCNNGG 6 cut(s) 183, 319, 328, 351, 373, 834
BssMI GATC 8 cut(s) 72, 174, 207, 631, 648, 660, 765, 962
BssNI GRCGYC 3 cut(s) 81, 93, 111
BssT1I CCWWGG 5 cut(s) 183, 319, 328, 373, 834
Bst2UI CCWGG 1 cut(s) 677
Bst4CI ACNGT 5 cut(s) 526, 548, 577, 607, 914
BstACI GRCGYC 3 cut(s) 81, 93, 111
BstC8I GCNNGC 4 cut(s) 97, 130, 438, 870
BstDEI CTNAG 4 cut(s) 30, 105, 425, 456
BstDSI CCRYGG 1 cut(s) 328
BstEII GGTNACC 2 cut(s) 47, 368
BstENI CCTNNNNNAGG 1 cut(s) 104
BstF5I GGATG 1 cut(s) 685
BstHHI GCGC 1 cut(s) 491
BstKTI GATC 8 cut(s) 75, 177, 210, 634, 651, 663, 768, 965
BstMAI GTCTC 4 cut(s) 5, 128, 398, 755
BstMBI GATC 8 cut(s) 72, 174, 207, 631, 648, 660, 765, 962
BstMCI CGRYCG 2 cut(s) 249, 760
BstMWI GCNNNNNNNGC 3 cut(s) 101, 110, 138
BstNI CCWGG 1 cut(s) 677
BstNSI RCATGY 2 cut(s) 385, 647
BstPAI GACNNNNGTC 3 cut(s) 255, 375, 518
BstPI GGTNACC 2 cut(s) 47, 368
BstSCI CCNGG 1 cut(s) 675
BstV1I GCAGC 3 cut(s) 310, 613, 884
BstV2I GAAGAC 1 cut(s) 692
BstX2I RGATCY 2 cut(s) 72, 962
BstYI RGATCY 2 cut(s) 72, 962
BstZI CGGCCG 2 cut(s) 246, 757
BsuRI GGCC 6 cut(s) 248, 333, 349, 502, 714, 759
BtgI CCRYGG 1 cut(s) 328
BtrI CACGTC 1 cut(s) 253
BtsCI GGATG 1 cut(s) 685
BtsIMutI CAGTG 4 cut(s) 396, 573, 898, 910
BveI ACCTGC 1 cut(s) 146
Cac8I GCNNGC 4 cut(s) 97, 130, 438, 870
CfoI GCGC 1 cut(s) 491
Cfr10I RCCGGY 1 cut(s) 755
Cfr13I GGNCC 3 cut(s) 348, 731, 826
CseI GACGC 3 cut(s) 89, 101, 119
Csp6I GTAC 3 cut(s) 483, 532, 673
CviAII CATG 9 cut(s) 154, 160, 329, 382, 431, 492, 596, 644, 737
CviQI GTAC 3 cut(s) 483, 532, 673
DdeI CTNAG 4 cut(s) 30, 105, 425, 456
DpnI GATC 8 cut(s) 74, 176, 209, 633, 650, 662, 767, 964
DpnII GATC 8 cut(s) 72, 174, 207, 631, 648, 660, 765, 962
EaeI YGGCCR 4 cut(s) 246, 331, 712, 757
EagI CGGCCG 2 cut(s) 246, 757
EclXI CGGCCG 2 cut(s) 246, 757
Eco130I CCWWGG 5 cut(s) 183, 319, 328, 373, 834
Eco147I AGGCCT 1 cut(s) 502
Eco24I GRGCYC 1 cut(s) 308
Eco31I GGTCTC 4 cut(s) 5, 128, 398, 755
Eco47I GGWCC 2 cut(s) 731, 826
Eco52I CGGCCG 2 cut(s) 246, 757
Eco57I CTGAAG 1 cut(s) 656
Eco88I CYCGRG 1 cut(s) 350
Eco91I GGTNACC 2 cut(s) 47, 368
EcoNI CCTNNNNNAGG 1 cut(s) 104
EcoO109I RGGNCCY 2 cut(s) 731, 826
EcoO65I GGTNACC 2 cut(s) 47, 368
EcoRII CCWGG 1 cut(s) 675
EcoT14I CCWWGG 5 cut(s) 183, 319, 328, 373, 834
EcoT38I GRGCYC 1 cut(s) 308
ErhI CCWWGG 5 cut(s) 183, 319, 328, 373, 834
FaeI CATG 9 cut(s) 157, 163, 332, 385, 434, 495, 599, 647, 740
FalI AAGNNNNNCTT 2 cut(s) 677, 709
FatI CATG 9 cut(s) 153, 159, 328, 381, 430, 491, 595, 643, 736
FbaI TGATCA 1 cut(s) 648
Fnu4HI GCNGC 5 cut(s) 226, 299, 627, 760, 873
FokI GGATG 1 cut(s) 692
FriOI GRGCYC 1 cut(s) 308
Fsp4HI GCNGC 5 cut(s) 226, 299, 627, 760, 873
FspBI CTAG 1 cut(s) 101
FspI TGCGCA 1 cut(s) 490
GlaI GCGC 1 cut(s) 490
GluI GCNGC 5 cut(s) 226, 299, 627, 760, 873
GsaI CCCAGC 2 cut(s) 595, 793
HaeIII GGCC 6 cut(s) 248, 333, 349, 502, 714, 759
HapII CCGG 3 cut(s) 756, 819, 941
HgaI GACGC 3 cut(s) 89, 101, 119
HhaI GCGC 1 cut(s) 491
Hin1I GRCGYC 3 cut(s) 81, 93, 111
Hin1II CATG 9 cut(s) 157, 163, 332, 385, 434, 495, 599, 647, 740
Hin6I GCGC 1 cut(s) 489
HinP1I GCGC 1 cut(s) 489
HincII GTYRAC 3 cut(s) 289, 841, 927
HindII GTYRAC 3 cut(s) 289, 841, 927
HinfI GANTC 4 cut(s) 32, 717, 928, 948
HpaII CCGG 3 cut(s) 756, 819, 941
HphI GGTGA 9 cut(s) 16, 41, 169, 182, 380, 454, 514, 745, 752
Hpy166II GTNNAC 7 cut(s) 24, 196, 289, 571, 841, 896, 927
Hpy188I TCNGA 3 cut(s) 31, 79, 636
Hpy188III TCNNGA 6 cut(s) 8, 89, 107, 260, 952, 969
Hpy8I GTNNAC 7 cut(s) 24, 196, 289, 571, 841, 896, 927
Hpy99I CGWCG 3 cut(s) 83, 95, 254
HpyAV CCTTC 3 cut(s) 25, 631, 823
HpyCH4III ACNGT 5 cut(s) 526, 548, 577, 607, 914
HpyCH4IV ACGT 1 cut(s) 252
HpyCH4V TGCA 3 cut(s) 141, 276, 902
HpyF10VI GCNNNNNNNGC 3 cut(s) 101, 110, 138
HpyF3I CTNAG 4 cut(s) 30, 105, 425, 456
HpySE526I ACGT 1 cut(s) 252
Hsp92I GRCGYC 3 cut(s) 81, 93, 111
Hsp92II CATG 9 cut(s) 157, 163, 332, 385, 434, 495, 599, 647, 740
HspAI GCGC 1 cut(s) 489
Ksp22I TGATCA 1 cut(s) 648
Kzo9I GATC 8 cut(s) 72, 174, 207, 631, 648, 660, 765, 962
LmnI GCTCC 4 cut(s) 362, 640, 851, 906
Lsp1109I GCAGC 3 cut(s) 310, 613, 884
LweI GCATC 3 cut(s) 253, 408, 733
MaeI CTAG 1 cut(s) 101
MaeII ACGT 1 cut(s) 252
MaeIII GTNAC 6 cut(s) 47, 215, 368, 377, 520, 607
MalI GATC 8 cut(s) 74, 176, 209, 633, 650, 662, 767, 964
MboI GATC 8 cut(s) 72, 174, 207, 631, 648, 660, 765, 962
MboII GAAGA 3 cut(s) 217, 685, 697
MflI RGATCY 2 cut(s) 72, 962
MhlI GDGCHC 4 cut(s) 285, 308, 438, 799
MlsI TGGCCA 1 cut(s) 333
MluCI AATT 1 cut(s) 582
MluNI TGGCCA 1 cut(s) 333
MlyI GAGTC 2 cut(s) 41, 922
MmeI TCCRAC 1 cut(s) 102
Mox20I TGGCCA 1 cut(s) 333
MscI TGGCCA 1 cut(s) 333
MslI CAYNNNNRTG 3 cut(s) 158, 741, 804
Msp20I TGGCCA 1 cut(s) 333
MspI CCGG 3 cut(s) 756, 819, 941
MspR9I CCNGG 1 cut(s) 677
MvaI CCWGG 1 cut(s) 677
MwoI GCNNNNNNNGC 3 cut(s) 101, 110, 138
NcoI CCATGG 1 cut(s) 328
NdeII GATC 8 cut(s) 72, 174, 207, 631, 648, 660, 765, 962
NlaIII CATG 9 cut(s) 157, 163, 332, 385, 434, 495, 599, 647, 740
NlaIV GGNNCC 6 cut(s) 558, 811, 828, 853, 908, 939
NmuCI GTSAC 6 cut(s) 47, 215, 368, 377, 520, 607
NsbI TGCGCA 1 cut(s) 490
NspI RCATGY 2 cut(s) 385, 647
OliI CACNNNNGTG 1 cut(s) 804
PceI AGGCCT 1 cut(s) 502
PciI ACATGT 1 cut(s) 381
PcsI WCGNNNNNNNCGW 3 cut(s) 87, 207, 246
PfeI GAWTC 2 cut(s) 717, 948
PkrI GCNGC 5 cut(s) 227, 300, 628, 761, 874
PleI GAGTC 2 cut(s) 40, 922
PpsI GAGTC 2 cut(s) 40, 922
PpuMI RGGWCCY 2 cut(s) 731, 826
PscI ACATGT 1 cut(s) 381
PshAI GACNNNNGTC 3 cut(s) 255, 375, 518
Psp5II RGGWCCY 2 cut(s) 731, 826
Psp6I CCWGG 1 cut(s) 675
PspEI GGTNACC 2 cut(s) 47, 368
PspFI CCCAGC 2 cut(s) 591, 789
PspGI CCWGG 1 cut(s) 675
PspN4I GGNNCC 6 cut(s) 558, 811, 828, 853, 908, 939
PspPI GGNCC 3 cut(s) 348, 731, 826
PspPPI RGGWCCY 2 cut(s) 731, 826
PsuI RGATCY 2 cut(s) 72, 962
RsaI GTAC 3 cut(s) 484, 533, 674
RsaNI GTAC 3 cut(s) 483, 532, 673
RseI CAYNNNNRTG 3 cut(s) 158, 741, 804
SatI GCNGC 5 cut(s) 226, 299, 627, 760, 873
Sau3AI GATC 8 cut(s) 72, 174, 207, 631, 648, 660, 765, 962
Sau96I GGNCC 3 cut(s) 348, 731, 826
ScaI AGTACT 1 cut(s) 533
SchI GAGTC 2 cut(s) 41, 922
ScrFI CCNGG 1 cut(s) 677
SduI GDGCHC 4 cut(s) 285, 308, 438, 799
SfaNI GCATC 3 cut(s) 253, 408, 733
SinI GGWCC 2 cut(s) 731, 826
SmiMI CAYNNNNRTG 3 cut(s) 158, 741, 804
SmlI CTYRAG 2 cut(s) 8, 967
SmoI CTYRAG 2 cut(s) 8, 967
Sse9I AATT 1 cut(s) 582
SseBI AGGCCT 1 cut(s) 502
SsiI CCGC 2 cut(s) 226, 760
SspMI CTAG 1 cut(s) 101
StuI AGGCCT 1 cut(s) 502
StyD4I CCNGG 1 cut(s) 675
StyI CCWWGG 5 cut(s) 183, 319, 328, 373, 834
TaaI ACNGT 5 cut(s) 526, 548, 577, 607, 914
TaiI ACGT 1 cut(s) 255
TaqI TCGA 3 cut(s) 90, 587, 774
TasI AATT 1 cut(s) 582
TatI WGTACW 1 cut(s) 531
TauI GCSGC 2 cut(s) 228, 762
TfiI GAWTC 2 cut(s) 717, 948
TscAI CASTG 4 cut(s) 403, 580, 898, 917
TseFI GTSAC 6 cut(s) 47, 215, 368, 377, 520, 607
TseI GCWGC 3 cut(s) 298, 626, 872
Tsp45I GTSAC 6 cut(s) 47, 215, 368, 377, 520, 607
TspDTI ATGAA 1 cut(s) 615
TspGWI ACGGA 6 cut(s) 25, 203, 554, 798, 816, 906
TspRI CASTG 4 cut(s) 403, 580, 898, 917
VpaK11BI GGWCC 2 cut(s) 731, 826
XagI CCTNNNNNAGG 1 cut(s) 104
XceI RCATGY 2 cut(s) 385, 647
XcmI CCANNNNNNNNNTGG 4 cut(s) 151, 157, 190, 326
XspI CTAG 1 cut(s) 101
ZrmI AGTACT 1 cut(s) 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.