RchiOBHm_Chr3g0461821

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
9795146 .. 9795759
614 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 318 bp
ATGGAGGGGAGGAAGAGAAGGAATAGGATGCGTTTGAAGATGGTGGCTTGGAAAACCTGGTTTTGCTTGAAGCAGTCTTGCCTCATCCCAACCAAGTGTTTTCTGATCAAGCTTACTTTGCGCTCAAGGCACAAACAGAAAGGAAATGGGAATGGATTGGTGAGTTTGTACAAAGATATTGAAACTTGTGGCGAGTATGCAGATATAAAAGTGATGTGGGAGATGATTCATTCTTGTCCTCAGAATTCAAACAACAGTACTGAAAGGAGGAAGAGGTCTTCTTCTTATTGGAGATTTTGTGTACATCCTAGTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

12.52

Weight (kDa)

10.16

Isoelectric Point (pI)

68.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017686)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g10780
malus_domestica MD12G1178400.v1.1
prunus_persica Prupe.6G283600_v2.0.a1
pyrus_communis pycom12g16840
rosa_chinensis RchiOBHm_Chr3g0461821
rosa_laevigata RLG00000024895
rosa_multiflora Rmu_sc0004308.1_g000014
rosa_roxburghii Rroxscaffold_6G00417890
rosa_rugosa Rorug03G0053900
rosa_samantha Rh3AG112000 Rh3BG115300 Rh3DG117000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 244
AfaI GTAC 4 cut(s) 170, 259, 303, 313
AgsI TTSAA 4 cut(s) 37, 70, 182, 249
AjnI CCWGG 1 cut(s) 56
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
ApoI RAATTY 1 cut(s) 244
AspLEI GCGC 1 cut(s) 123
AsuHPI GGTGA 1 cut(s) 172
BbsI GAAGAC 1 cut(s) 270
BccI CCATC 1 cut(s) 34
BciT130I CCWGG 1 cut(s) 58
BclI TGATCA 1 cut(s) 105
BfaI CTAG 1 cut(s) 309
BmcAI AGTACT 1 cut(s) 259
Bme1390I CCNGG 1 cut(s) 58
BmrFI CCNGG 1 cut(s) 58
BmsI GCATC 1 cut(s) 18
BpiI GAAGAC 1 cut(s) 270
BpuEI CTTGAG 1 cut(s) 109
BsaXI ACNNNNNCTCC 2 cut(s) 283, 313
BseBI CCWGG 1 cut(s) 58
BseGI GGATG 3 cut(s) 33, 84, 304
BseMII CTCAG 1 cut(s) 254
Bsp1407I TGTACA 2 cut(s) 168, 301
Bsp143I GATC 1 cut(s) 105
BspCNI CTCAG 1 cut(s) 253
BsrGI TGTACA 2 cut(s) 168, 301
BssMI GATC 1 cut(s) 105
Bst2UI CCWGG 1 cut(s) 58
Bst4CI ACNGT 1 cut(s) 257
Bst6I CTCTTC 2 cut(s) 8, 266
BstAUI TGTACA 2 cut(s) 168, 301
BstDEI CTNAG 1 cut(s) 240
BstF5I GGATG 3 cut(s) 33, 84, 304
BstHHI GCGC 1 cut(s) 123
BstKTI GATC 1 cut(s) 108
BstMBI GATC 1 cut(s) 105
BstMWI GCNNNNNNNGC 2 cut(s) 118, 127
BstNI CCWGG 1 cut(s) 58
BstSCI CCNGG 1 cut(s) 56
BstV2I GAAGAC 1 cut(s) 270
BtsCI GGATG 3 cut(s) 33, 84, 304
CfoI GCGC 1 cut(s) 123
CsiI ACCWGGT 1 cut(s) 56
Csp6I GTAC 4 cut(s) 169, 258, 302, 312
CviAII CATG 1 cut(s) 315
CviJI RGCY 2 cut(s) 47, 112
CviKI_1 RGCY 2 cut(s) 47, 112
CviQI GTAC 4 cut(s) 169, 258, 302, 312
DdeI CTNAG 1 cut(s) 240
DpnI GATC 1 cut(s) 107
DpnII GATC 1 cut(s) 105
Eam1104I CTCTTC 2 cut(s) 8, 266
EarI CTCTTC 2 cut(s) 8, 266
EcoRI GAATTC 1 cut(s) 244
EcoRII CCWGG 1 cut(s) 56
FaeI CATG 1 cut(s) 318
FaiI YATR 3 cut(s) 198, 206, 316
FatI CATG 1 cut(s) 314
FbaI TGATCA 1 cut(s) 105
FokI GGATG 3 cut(s) 40, 71, 291
FspBI CTAG 1 cut(s) 309
GlaI GCGC 1 cut(s) 122
HhaI GCGC 1 cut(s) 123
Hin1II CATG 1 cut(s) 318
Hin6I GCGC 1 cut(s) 121
HinP1I GCGC 1 cut(s) 121
HindIII AAGCTT 1 cut(s) 110
HinfI GANTC 1 cut(s) 226
HphI GGTGA 1 cut(s) 172
Hpy166II GTNNAC 1 cut(s) 302
Hpy188I TCNGA 2 cut(s) 105, 243
Hpy8I GTNNAC 1 cut(s) 302
HpyAV CCTTC 1 cut(s) 12
HpyCH4III ACNGT 1 cut(s) 257
HpyCH4V TGCA 1 cut(s) 200
HpyF10VI GCNNNNNNNGC 2 cut(s) 118, 127
HpyF3I CTNAG 1 cut(s) 240
Hsp92II CATG 1 cut(s) 318
HspAI GCGC 1 cut(s) 121
Ksp22I TGATCA 1 cut(s) 105
Kzo9I GATC 1 cut(s) 105
LpnPI CCDG 2 cut(s) 43, 70
LweI GCATC 1 cut(s) 18
MabI ACCWGGT 1 cut(s) 56
MaeI CTAG 1 cut(s) 309
MalI GATC 1 cut(s) 107
MboI GATC 1 cut(s) 105
MboII GAAGA 5 cut(s) 25, 49, 270, 273, 283
MluCI AATT 1 cut(s) 244
MnlI CCTC 5 cut(s) 3, 92, 249, 261, 267
MspR9I CCNGG 1 cut(s) 58
MvaI CCWGG 1 cut(s) 58
MwoI GCNNNNNNNGC 2 cut(s) 118, 127
NdeII GATC 1 cut(s) 105
NlaIII CATG 1 cut(s) 318
PfeI GAWTC 1 cut(s) 226
Psp6I CCWGG 1 cut(s) 56
PspGI CCWGG 1 cut(s) 56
RsaI GTAC 4 cut(s) 170, 259, 303, 313
RsaNI GTAC 4 cut(s) 169, 258, 302, 312
Sau3AI GATC 1 cut(s) 105
ScaI AGTACT 1 cut(s) 259
ScrFI CCNGG 1 cut(s) 58
SetI ASST 3 cut(s) 59, 114, 278
SexAI ACCWGGT 1 cut(s) 56
SfaNI GCATC 1 cut(s) 18
SmlI CTYRAG 1 cut(s) 124
SmoI CTYRAG 1 cut(s) 124
Sse9I AATT 1 cut(s) 244
SspMI CTAG 1 cut(s) 309
StyD4I CCNGG 1 cut(s) 56
TaaI ACNGT 1 cut(s) 257
TasI AATT 1 cut(s) 244
TatI WGTACW 4 cut(s) 168, 257, 301, 311
TfiI GAWTC 1 cut(s) 226
TspDTI ATGAA 1 cut(s) 218
XapI RAATTY 1 cut(s) 244
XspI CTAG 1 cut(s) 309
ZrmI AGTACT 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.