RchiOBHm_Chr3g0466321

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0017898
Physical Location & Seq
Reverse (-)
12779508 .. 12779723
216 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 201 bp
ATGGAGCGATGTGACGAGCACTGTACGACGCCGAAGCGCCGCGAGTGTCGGATACCGGAGGAGTCCATGTGTCCTCCGGCGCCGAGGAAAAAAGCGGCCGGGGATCAAAACAAGAGGGACCCGCCGAAGAACGGCTACTTCCAGCCGCCTGATCTCGATTCTCTGTTCAACATGCCACCCAGAACTCAAGTTTGCGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

66

Amino Acids

7.59

Weight (kDa)

8.35

Isoelectric Point (pI)

79.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017898)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G02220
fragaria_vesca FvH4_6g13440
malus_domestica MD04G1131100.v1.1 MD12G1144200.v1.1
prunus_persica Prupe.6G257600_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0466321
rosa_roxburghii Rroxscaffold_6G00414610
rosa_rugosa Rorug03G0080900
rosa_samantha Rh3BG148600 Rh3DG149300
rosa_wichuraiana Rw3G012020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 79
AccII CGCG 1 cut(s) 42
AciI CCGC 4 cut(s) 40, 95, 122, 146
AclWI GGATC 1 cut(s) 111
AcoI YGGCCR 1 cut(s) 96
AcyI GRCGYC 2 cut(s) 29, 80
AfaI GTAC 1 cut(s) 25
AfiI CCNNNNNNNGG 1 cut(s) 131
AgsI TTSAA 1 cut(s) 169
Alw21I GWGCWC 1 cut(s) 21
AlwI GGATC 1 cut(s) 111
AoxI GGCC 1 cut(s) 96
AspLEI GCGC 3 cut(s) 39, 82, 197
AspS9I GGNCC 1 cut(s) 118
AsuC2I CCSGG 1 cut(s) 100
AvaII GGWCC 1 cut(s) 118
BanI GGYRCC 1 cut(s) 79
BarI GAAGNNNNNNTAC 2 cut(s) 119, 151
Bbv12I GWGCWC 1 cut(s) 21
BceAI ACGGC 1 cut(s) 148
BciVI GTATCC 1 cut(s) 45
BcnI CCSGG 1 cut(s) 100
BfoI RGCGCY 2 cut(s) 40, 83
BfuI GTATCC 1 cut(s) 45
BisI GCNGC 3 cut(s) 40, 96, 146
BlsI GCNGC 3 cut(s) 41, 97, 147
Bme1390I CCNGG 1 cut(s) 100
Bme18I GGWCC 1 cut(s) 118
BmgT120I GGNCC 1 cut(s) 118
BmiI GGNNCC 3 cut(s) 81, 119, 120
BmrFI CCNGG 1 cut(s) 100
BpuEI CTTGAG 1 cut(s) 171
BpuMI CCSGG 1 cut(s) 100
BsaHI GRCGYC 2 cut(s) 29, 80
BsaJI CCNNGG 2 cut(s) 83, 99
BsaWI WCCGGW 1 cut(s) 55
BsaXI ACNNNNNCTCC 2 cut(s) 53, 83
Bsc4I CCNNNNNNNGG 1 cut(s) 131
BseDI CCNNGG 2 cut(s) 83, 99
BseLI CCNNNNNNNGG 1 cut(s) 131
BseRI GAGGAG 1 cut(s) 74
BseX3I CGGCCG 1 cut(s) 96
Bsh1236I CGCG 1 cut(s) 42
Bsh1285I CGRYCG 1 cut(s) 99
BshFI GGCC 1 cut(s) 98
BshNI GGYRCC 1 cut(s) 79
BsiEI CGRYCG 1 cut(s) 99
BsiHKAI GWGCWC 1 cut(s) 21
BsiSI CCGG 3 cut(s) 56, 77, 99
BslFI GGGAC 1 cut(s) 131
BslI CCNNNNNNNGG 1 cut(s) 131
BsmFI GGGAC 1 cut(s) 131
BsnI GGCC 1 cut(s) 98
Bsp1286I GDGCHC 1 cut(s) 21
Bsp143I GATC 2 cut(s) 103, 151
BspACI CCGC 4 cut(s) 40, 95, 122, 146
BspANI GGCC 1 cut(s) 98
BspFNI CGCG 1 cut(s) 42
BspLI GGNNCC 3 cut(s) 81, 119, 120
BspPI GGATC 1 cut(s) 111
BspT107I GGYRCC 1 cut(s) 79
BssECI CCNNGG 2 cut(s) 83, 99
BssMI GATC 2 cut(s) 103, 151
BssNI GRCGYC 2 cut(s) 29, 80
Bst4CI ACNGT 1 cut(s) 23
BstACI GRCGYC 2 cut(s) 29, 80
BstDEI CTNAG 1 cut(s) 198
BstFNI CGCG 1 cut(s) 42
BstH2I RGCGCY 2 cut(s) 40, 83
BstHHI GCGC 3 cut(s) 39, 82, 197
BstKTI GATC 2 cut(s) 106, 154
BstMBI GATC 2 cut(s) 103, 151
BstMCI CGRYCG 1 cut(s) 99
BstNSI RCATGY 1 cut(s) 175
BstSCI CCNGG 1 cut(s) 98
BstUI CGCG 1 cut(s) 42
BstZI CGGCCG 1 cut(s) 96
BsuI GTATCC 1 cut(s) 45
BsuRI GGCC 1 cut(s) 98
BtgZI GCGATG 1 cut(s) 22
BtsIMutI CAGTG 1 cut(s) 19
CfoI GCGC 3 cut(s) 39, 82, 197
Cfr13I GGNCC 1 cut(s) 118
CseI GACGC 1 cut(s) 37
Csp6I GTAC 1 cut(s) 24
CviAII CATG 2 cut(s) 67, 172
CviJI RGCY 3 cut(s) 98, 135, 145
CviKI_1 RGCY 3 cut(s) 98, 135, 145
CviQI GTAC 1 cut(s) 24
DdeI CTNAG 1 cut(s) 198
DinI GGCGCC 1 cut(s) 81
DpnI GATC 2 cut(s) 105, 153
DpnII GATC 2 cut(s) 103, 151
EaeI YGGCCR 1 cut(s) 96
EagI CGGCCG 1 cut(s) 96
EclXI CGGCCG 1 cut(s) 96
Eco47I GGWCC 1 cut(s) 118
Eco52I CGGCCG 1 cut(s) 96
EcoO109I RGGNCCY 1 cut(s) 118
EgeI GGCGCC 1 cut(s) 81
EheI GGCGCC 1 cut(s) 81
FaeI CATG 2 cut(s) 70, 175
FaiI YATR 2 cut(s) 68, 173
FaqI GGGAC 1 cut(s) 131
FatI CATG 2 cut(s) 66, 171
FauI CCCGC 1 cut(s) 129
Fnu4HI GCNGC 3 cut(s) 40, 96, 146
Fsp4HI GCNGC 3 cut(s) 40, 96, 146
GlaI GCGC 3 cut(s) 38, 81, 196
GluI GCNGC 3 cut(s) 40, 96, 146
HaeII RGCGCY 2 cut(s) 40, 83
HaeIII GGCC 1 cut(s) 98
HapII CCGG 3 cut(s) 56, 77, 99
HgaI GACGC 1 cut(s) 37
HhaI GCGC 3 cut(s) 39, 82, 197
Hin1I GRCGYC 2 cut(s) 29, 80
Hin1II CATG 2 cut(s) 70, 175
Hin6I GCGC 3 cut(s) 37, 80, 195
HinP1I GCGC 3 cut(s) 37, 80, 195
HinfI GANTC 2 cut(s) 62, 158
HpaII CCGG 3 cut(s) 56, 77, 99
Hpy188I TCNGA 1 cut(s) 51
Hpy188III TCNNGA 1 cut(s) 155
Hpy99I CGWCG 1 cut(s) 31
HpyCH4III ACNGT 1 cut(s) 23
HpyF3I CTNAG 1 cut(s) 198
Hsp92I GRCGYC 2 cut(s) 29, 80
Hsp92II CATG 2 cut(s) 70, 175
HspAI GCGC 3 cut(s) 37, 80, 195
KasI GGCGCC 1 cut(s) 79
KflI GGGWCCC 1 cut(s) 118
Kzo9I GATC 2 cut(s) 103, 151
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 6 cut(s) 69, 90, 112, 155, 162, 193
MaeIII GTNAC 1 cut(s) 11
MalI GATC 2 cut(s) 105, 153
MboI GATC 2 cut(s) 103, 151
MboII GAAGA 1 cut(s) 139
MhlI GDGCHC 1 cut(s) 21
Mly113I GGCGCC 1 cut(s) 80
MlyI GAGTC 1 cut(s) 71
MmeI TCCRAC 1 cut(s) 29
MnlI CCTC 4 cut(s) 52, 78, 84, 108
MspI CCGG 3 cut(s) 56, 77, 99
MspR9I CCNGG 1 cut(s) 100
MvnI CGCG 1 cut(s) 42
NarI GGCGCC 1 cut(s) 80
NciI CCSGG 1 cut(s) 100
NdeII GATC 2 cut(s) 103, 151
NlaIII CATG 2 cut(s) 70, 175
NlaIV GGNNCC 3 cut(s) 81, 119, 120
NmeAIII GCCGAG 1 cut(s) 108
NmuCI GTSAC 1 cut(s) 11
NspI RCATGY 1 cut(s) 175
PfeI GAWTC 1 cut(s) 158
PkrI GCNGC 3 cut(s) 41, 97, 147
PleI GAGTC 1 cut(s) 70
PluTI GGCGCC 1 cut(s) 83
PpsI GAGTC 1 cut(s) 70
PpuMI RGGWCCY 1 cut(s) 118
Psp5II RGGWCCY 1 cut(s) 118
PspN4I GGNNCC 3 cut(s) 81, 119, 120
PspPI GGNCC 1 cut(s) 118
PspPPI RGGWCCY 1 cut(s) 118
RsaI GTAC 1 cut(s) 25
RsaNI GTAC 1 cut(s) 24
SatI GCNGC 3 cut(s) 40, 96, 146
Sau3AI GATC 2 cut(s) 103, 151
Sau96I GGNCC 1 cut(s) 118
SchI GAGTC 1 cut(s) 71
ScrFI CCNGG 1 cut(s) 100
SduI GDGCHC 1 cut(s) 21
SfoI GGCGCC 1 cut(s) 81
SinI GGWCC 1 cut(s) 118
SmlI CTYRAG 1 cut(s) 186
SmoI CTYRAG 1 cut(s) 186
SsiI CCGC 4 cut(s) 40, 95, 122, 146
SspDI GGCGCC 1 cut(s) 79
StyD4I CCNGG 1 cut(s) 98
TaaI ACNGT 1 cut(s) 23
TaqI TCGA 1 cut(s) 156
TauI GCSGC 3 cut(s) 42, 98, 148
TfiI GAWTC 1 cut(s) 158
TscAI CASTG 1 cut(s) 26
TseFI GTSAC 1 cut(s) 11
Tsp45I GTSAC 1 cut(s) 11
TspRI CASTG 1 cut(s) 26
VpaK11BI GGWCC 1 cut(s) 118
XceI RCATGY 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.