RchiOBHm_Chr3g0469561

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
15355468 .. 15356096
629 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 156 bp
ATGTCAGAGAAGATGAGATTTTTGGTTTCTTGGATTGAAGTTGCGCCTGCGCTTCTGATACGTCCCAACAGGAGTTCAACTTCTCCAGAATTGGAGACGATTACTGAAGAGTGGGAGCAGGAGGCAGAGGACTATGACCAAAAGTCTACCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

51

Amino Acids

5.99

Weight (kDa)

4.32

Isoelectric Point (pI)

91.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018727)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03210 AT5G03210
prunus_persica Prupe.6G236900_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0469561 RchiOBHm_Chr3g0469571
rosa_multiflora Rmu_sc0006483.1_g000004
rosa_rugosa Rorug03G0102600
rosa_samantha Rh3AG151900 Rh3DG199900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 146
AcuI CTGAAG 1 cut(s) 126
AgsI TTSAA 2 cut(s) 38, 78
AhdI GACNNNNNGTC 1 cut(s) 142
Alw26I GTCTC 1 cut(s) 89
AspLEI GCGC 2 cut(s) 46, 52
BcoDI GTCTC 1 cut(s) 89
BmeRI GACNNNNNGTC 1 cut(s) 142
BpmI CTGGAG 1 cut(s) 69
BslFI GGGAC 1 cut(s) 48
BsmAI GTCTC 1 cut(s) 89
BsmBI CGTCTC 1 cut(s) 89
BsmFI GGGAC 1 cut(s) 48
Bst6I CTCTTC 1 cut(s) 102
BstC8I GCNNGC 1 cut(s) 48
BstHHI GCGC 2 cut(s) 46, 52
BstMAI GTCTC 1 cut(s) 89
Cac8I GCNNGC 1 cut(s) 48
CfoI GCGC 2 cut(s) 46, 52
DriI GACNNNNNGTC 1 cut(s) 142
Eam1104I CTCTTC 1 cut(s) 102
Eam1105I GACNNNNNGTC 1 cut(s) 142
EarI CTCTTC 1 cut(s) 102
Eco57I CTGAAG 1 cut(s) 126
Esp3I CGTCTC 1 cut(s) 89
FaiI YATR 1 cut(s) 135
FaqI GGGAC 1 cut(s) 48
FblI GTMKAC 1 cut(s) 146
GlaI GCGC 2 cut(s) 45, 51
GsuI CTGGAG 1 cut(s) 69
HhaI GCGC 2 cut(s) 46, 52
Hin6I GCGC 2 cut(s) 44, 50
HinP1I GCGC 2 cut(s) 44, 50
Hpy166II GTNNAC 1 cut(s) 147
Hpy188I TCNGA 2 cut(s) 7, 57
Hpy188III TCNNGA 1 cut(s) 86
Hpy8I GTNNAC 1 cut(s) 147
HpyCH4IV ACGT 1 cut(s) 61
HpySE526I ACGT 1 cut(s) 61
HspAI GCGC 2 cut(s) 44, 50
LmnI GCTCC 1 cut(s) 115
LpnPI CCDG 4 cut(s) 55, 60, 99, 104
MaeII ACGT 1 cut(s) 61
MboII GAAGA 2 cut(s) 22, 119
MfeI CAATTG 1 cut(s) 151
MluCI AATT 2 cut(s) 89, 151
MnlI CCTC 2 cut(s) 115, 121
MunI CAATTG 1 cut(s) 151
SetI ASST 1 cut(s) 64
SgeI CNNG 5 cut(s) 42, 59, 82, 98, 131
Sse9I AATT 2 cut(s) 89, 151
TaiI ACGT 1 cut(s) 64
TasI AATT 2 cut(s) 89, 151
XmiI GTMKAC 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.