RchiOBHm_Chr3g0471261

permease

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
17142494 .. 17144545
2052 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1704 bp
ATGGTGCCCAAATGTCTCAGCTTTCATGTCCATCCCTCCTTTCCTGCAATAACAAGAAACCCAAGACCCTGCTCTAGCTTTCTGACCTCTCCTTTTCTGCCAACTAACTTAACTGCCAAGTTCCACACCACCCATGTACAAGCTCATCATCATCTTACTCTTAGAAGCCCCATTTTCACCACCATGGCTTCAATCCAATCCACTCCTAGTCCCAAATTCGATGACTTTGAAGCCGATCCCACGCTCACCAACGACGATCTCAAGCCCACAACGCCGGACCAGAGGAGTTTTTCCCGGTGGGAATTGGCTAGTCTTTGGGTTGGCCTTGTTGTGGGAGTGCCAACTTACTACTTGGCTGGTAGTCTAGTTGACCTTGGAATGGCTTGGTGGCAAGGAATTGCCACAGTTGTAGCAGCCAACGTAGTACTACTAGTCCCACTGATCCTCACCGGTCATCCAGGCACTAAATATGGCATCTCTTTCCCGGTTTTGGCTAGATCCTCATTTGGGATCCATGGTGCTCATATCCCAACTCTTCTTAGAGCCTTGGTAGGTTGTGGTTGGTATGGAATTGAGACGTGGATCGGTGGTGAAGCAATTTTCCTTCTACTACCAAGTTCAATCAAAAGTTCCTCTTTGTCTCAATTCCTGCCATGGCTAGGCACATCCCCATTAGAGTTTGCTTGTTTTATTGTCTTTTGGGTTGCCCAATCGGCCATTGTTTGGAAAGGCATGGATGGAATCAGAGAGCTTGAGAAATACTCTGCTCCAATTCTAATCACACTCACGTCCTGCCTAGTAATTTGGGCTTATGTCAAAGCTGGTGGTTTTAGCCACATGCTTTCCATATCCTCCAAACTAACATCCCAACAATTTTGGTCCCTCTTCTTTCCTTCCCTCACTGCAAACATAAGCTTCTGGGCTACTGTTGCTCTCAACATACCCGATTTTACCCGATACGCCAAGAGCCAGACTGATCAGGTCATCGGTCAGGCGGGGCTGCCAATCTTCATGGGGGCATTCACATTCGTTGGCCTAGCTGTAACCTGCTCCACTGAGGTAATTTTTGGGCGTGTCATATCCAATCCAATCCAACTTCTTGGTGAGATCGGAGGGGTAACAACAATATTCCTAGCCATTTTGGGTGTTAGCCTTGCTACCCTTACCACCAACATTGCAGCTAATGTTGTGGCACCAGCAAATGCGCTAGTCAATCTTAGTCCTTCGAAGTTCACATTCAGAAGGGGAGCTATTTTCACAGCTTTGCTTGGAATTGCATTTCAGCCATGGAGGCTTCTTAGATCAAGTGAGAGCTTTGTCTACACATGGCTTGTTGGATATTCTGCTCTGTTGGGTCCAATTGGAGGCATAATTCTCGCAGATTACTATCTTGTCCACAATACAAACTTAAGCATGAAGGACTTGTACACACAAAGTCCTTATGGCGCTTACTACTATACGGGAGGCTACAATTTGCCAGCAATGGCAGCTCTTGTGTTTGGGATTTTGCCCGTGGTTCCAGGTTTCTTGCAAAAAGTTGGGGTTCTTTCTTCAGTATCACATACATTTGTGATCATCTACAACAATGCATGGTTTGTTAGCTTCTTCTCTGCTGGTTTTCTCTATTGGCTTCTGTTAGCTTTGAAAAGAAAACAGAACAAGTCTCACGCTTCAGAAGACCCACTATTGCCTCCTGCAAACTAA

Protein Analysis

567

Amino Acids

61.9

Weight (kDa)

9.07

Isoelectric Point (pI)

43.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transp_cyt_pur PF02133 91 - 533 5.1e-101 Permease for cytosine/purines, uracil, thiamine, allantoin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015211)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03555
fragaria_vesca FvH4_6g17170
malus_domestica MD12G1103200.v1.1
prunus_persica Prupe.7G123300_v2.0.a1
pyrus_communis pycom12g10160
rosa_chinensis RchiOBHm_Chr3g0471261
rosa_laevigata RLG00000024193
rosa_multiflora Rmu_co8430243.1_g000001 Rmu_sc0009082.1_g000011
rosa_roxburghii Rroxscaffold_6G00410160
rosa_rugosa Rorug03G0116700
rosa_samantha Rh3AG165800 Rh3BG191200 Rh3CG181500 Rh3DG184400
rosa_wichuraiana Rw3G015610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1055
AccB1I GGYRCC 2 cut(s) 4, 1192
AccB7I CCANNNNNTGG 1 cut(s) 723
AccI GTMKAC 1 cut(s) 1320
AciI CCGC 1 cut(s) 995
AclWI GGATC 6 cut(s) 230, 436, 492, 505, 518, 590
AcoI YGGCCR 1 cut(s) 714
AcsI RAATTY 1 cut(s) 215
AcuI CTGAAG 2 cut(s) 1536, 1656
AfaI GTAC 3 cut(s) 138, 426, 1427
AfiI CCNNNNNNNGG 7 cut(s) 331, 379, 490, 507, 659, 723, 1364
AflII CTTAAG 1 cut(s) 1408
AgeI ACCGGT 1 cut(s) 449
AgsI TTSAA 4 cut(s) 192, 230, 621, 1645
AhlI ACTAGT 1 cut(s) 430
AjiI CACGTC 2 cut(s) 579, 789
AjnI CCWGG 2 cut(s) 457, 1519
Alw21I GWGCWC 1 cut(s) 523
Alw26I GTCTC 4 cut(s) 20, 569, 645, 1668
AlwI GGATC 6 cut(s) 230, 436, 492, 505, 518, 590
AoxI GGCC 3 cut(s) 322, 714, 1033
ApeKI GCWGC 4 cut(s) 413, 1000, 1178, 1487
ApoI RAATTY 1 cut(s) 215
AsiGI ACCGGT 1 cut(s) 449
AspLEI GCGC 2 cut(s) 1207, 1448
AspS9I GGNCC 3 cut(s) 277, 879, 1355
AsuC2I CCSGG 2 cut(s) 295, 485
AsuHPI GGTGA 5 cut(s) 169, 238, 439, 602, 1115
AsuII TTCGAA 1 cut(s) 1226
AvaII GGWCC 3 cut(s) 277, 879, 1355
BaeGI GKGCMC 1 cut(s) 9
BamHI GGATCC 1 cut(s) 510
BanI GGYRCC 2 cut(s) 4, 1192
BarI GAAGNNNNNNTAC 2 cut(s) 1409, 1441
BbsI GAAGAC 1 cut(s) 1683
Bbv12I GWGCWC 1 cut(s) 523
BbvI GCAGC 4 cut(s) 425, 987, 1190, 1499
BccI CCATC 2 cut(s) 39, 731
BcgI CGANNNNNNTGC 2 cut(s) 1357, 1391
BciT130I CCWGG 2 cut(s) 459, 1521
BclI TGATCA 2 cut(s) 976, 1572
BcnI CCSGG 2 cut(s) 295, 485
BcoDI GTCTC 4 cut(s) 20, 569, 645, 1668
BcuI ACTAGT 1 cut(s) 430
BfoI RGCGCY 1 cut(s) 1449
BfrI CTTAAG 1 cut(s) 1408
BfuAI ACCTGC 1 cut(s) 1055
BglI GCCNNNNNGGC 2 cut(s) 713, 1291
BisI GCNGC 4 cut(s) 414, 1001, 1179, 1488
BlsI GCNGC 4 cut(s) 415, 1002, 1180, 1489
BmcAI AGTACT 1 cut(s) 426
Bme1390I CCNGG 4 cut(s) 295, 459, 485, 1521
Bme18I GGWCC 3 cut(s) 277, 879, 1355
BmgBI CACGTC 2 cut(s) 579, 789
BmgT120I GGNCC 3 cut(s) 277, 879, 1355
BmiI GGNNCC 6 cut(s) 6, 512, 881, 1194, 1356, 1518
BmrFI CCNGG 4 cut(s) 295, 459, 485, 1521
BmsI GCATC 1 cut(s) 483
BpiI GAAGAC 1 cut(s) 1683
BplI GAGNNNNNCTC 2 cut(s) 746, 778
Bpu14I TTCGAA 1 cut(s) 1226
BpuEI CTTGAG 2 cut(s) 245, 773
BpuMI CCSGG 2 cut(s) 295, 485
BsaBI GATNNNNATC 1 cut(s) 1386
BsaJI CCNNGG 7 cut(s) 183, 373, 514, 546, 653, 1286, 1512
BsaWI WCCGGW 1 cut(s) 449
Bsc4I CCNNNNNNNGG 7 cut(s) 331, 379, 490, 507, 659, 723, 1364
Bse118I RCCGGY 1 cut(s) 449
Bse3DI GCAATG 2 cut(s) 1173, 1488
Bse8I GATNNNNATC 1 cut(s) 1386
BseBI CCWGG 2 cut(s) 459, 1521
BseDI CCNNGG 7 cut(s) 183, 373, 514, 546, 653, 1286, 1512
BseGI GGATG 5 cut(s) 31, 454, 665, 742, 863
BseJI GATNNNNATC 1 cut(s) 1386
BseLI CCNNNNNNNGG 7 cut(s) 331, 379, 490, 507, 659, 723, 1364
BseMI GCAATG 2 cut(s) 1173, 1488
BseMII CTCAG 2 cut(s) 31, 1047
BseRI GAGGAG 1 cut(s) 298
BseSI GKGCMC 1 cut(s) 9
BseXI GCAGC 4 cut(s) 425, 987, 1190, 1499
BshFI GGCC 3 cut(s) 324, 716, 1035
BshNI GGYRCC 2 cut(s) 4, 1192
BshTI ACCGGT 1 cut(s) 449
BsiHKAI GWGCWC 1 cut(s) 523
BsiSI CCGG 4 cut(s) 275, 295, 450, 485
BslFI GGGAC 3 cut(s) 195, 419, 865
BslI CCNNNNNNNGG 7 cut(s) 331, 379, 490, 507, 659, 723, 1364
BsmAI GTCTC 4 cut(s) 20, 569, 645, 1668
BsmBI CGTCTC 1 cut(s) 569
BsmFI GGGAC 3 cut(s) 195, 419, 865
BsmI GAATGC 1 cut(s) 1019
BsnI GGCC 3 cut(s) 324, 716, 1035
Bsp119I TTCGAA 1 cut(s) 1226
Bsp1286I GDGCHC 2 cut(s) 9, 523
Bsp1407I TGTACA 2 cut(s) 136, 1425
Bsp19I CCATGG 4 cut(s) 183, 514, 653, 1286
BspACI CCGC 1 cut(s) 995
BspANI GGCC 3 cut(s) 324, 716, 1035
BspCNI CTCAG 2 cut(s) 30, 1048
BspLI GGNNCC 6 cut(s) 6, 512, 881, 1194, 1356, 1518
BspMI ACCTGC 1 cut(s) 1055
BspPI GGATC 6 cut(s) 230, 436, 492, 505, 518, 590
BspT104I TTCGAA 1 cut(s) 1226
BspT107I GGYRCC 2 cut(s) 4, 1192
BspTI CTTAAG 1 cut(s) 1408
BsrDI GCAATG 2 cut(s) 1173, 1488
BsrFI RCCGGY 1 cut(s) 449
BsrGI TGTACA 2 cut(s) 136, 1425
BssAI RCCGGY 1 cut(s) 449
BssECI CCNNGG 7 cut(s) 183, 373, 514, 546, 653, 1286, 1512
BssT1I CCWWGG 6 cut(s) 183, 373, 514, 546, 653, 1286
Bst2UI CCWGG 2 cut(s) 459, 1521
Bst4CI ACNGT 2 cut(s) 406, 928
Bst6I CTCTTC 2 cut(s) 540, 890
BstAFI CTTAAG 1 cut(s) 1408
BstAUI TGTACA 2 cut(s) 136, 1425
BstBI TTCGAA 1 cut(s) 1226
BstC8I GCNNGC 1 cut(s) 1479
BstDEI CTNAG 6 cut(s) 17, 161, 539, 1056, 1217, 1298
BstDSI CCRYGG 5 cut(s) 183, 514, 653, 1286, 1512
BstF5I GGATG 5 cut(s) 31, 454, 665, 742, 863
BstH2I RGCGCY 1 cut(s) 1449
BstHHI GCGC 2 cut(s) 1207, 1448
BstMAI GTCTC 4 cut(s) 20, 569, 645, 1668
BstMWI GCNNNNNNNGC 5 cut(s) 271, 713, 929, 1291, 1487
BstNI CCWGG 2 cut(s) 459, 1521
BstNSI RCATGY 1 cut(s) 841
BstSCI CCNGG 4 cut(s) 293, 457, 483, 1519
BstSLI GKGCMC 1 cut(s) 9
BstV1I GCAGC 4 cut(s) 425, 987, 1190, 1499
BstV2I GAAGAC 1 cut(s) 1683
BstX2I RGATCY 2 cut(s) 497, 510
BstXI CCANNNNNNTGG 1 cut(s) 1100
BstYI RGATCY 2 cut(s) 497, 510
BsuRI GGCC 3 cut(s) 324, 716, 1035
BtgI CCRYGG 5 cut(s) 183, 514, 653, 1286, 1512
BtrI CACGTC 2 cut(s) 579, 789
BtsCI GGATG 5 cut(s) 31, 454, 665, 742, 863
BtsI GCAGTG 1 cut(s) 900
BtsIMutI CAGTG 3 cut(s) 437, 900, 1053
BveI ACCTGC 1 cut(s) 1055
Cac8I GCNNGC 1 cut(s) 1479
CfoI GCGC 2 cut(s) 1207, 1448
Cfr10I RCCGGY 1 cut(s) 449
Cfr13I GGNCC 3 cut(s) 277, 879, 1355
Csp6I GTAC 3 cut(s) 137, 425, 1426
CspAI ACCGGT 1 cut(s) 449
CspCI CAANNNNNGTGG 4 cut(s) 805, 840, 1156, 1191
CviQI GTAC 3 cut(s) 137, 425, 1426
DdeI CTNAG 6 cut(s) 17, 161, 539, 1056, 1217, 1298
EaeI YGGCCR 1 cut(s) 714
Eam1104I CTCTTC 2 cut(s) 540, 890
EarI CTCTTC 2 cut(s) 540, 890
Eco130I CCWWGG 6 cut(s) 183, 373, 514, 546, 653, 1286
Eco47I GGWCC 3 cut(s) 277, 879, 1355
Eco57I CTGAAG 2 cut(s) 1536, 1656
EcoRII CCWGG 2 cut(s) 457, 1519
EcoT14I CCWWGG 6 cut(s) 183, 373, 514, 546, 653, 1286
EcoT22I ATGCAT 1 cut(s) 1591
ErhI CCWWGG 6 cut(s) 183, 373, 514, 546, 653, 1286
Esp3I CGTCTC 1 cut(s) 569
FalI AAGNNNNNCTT 2 cut(s) 619, 651
FaqI GGGAC 3 cut(s) 195, 419, 865
FauI CCCGC 1 cut(s) 988
FbaI TGATCA 2 cut(s) 976, 1572
FblI GTMKAC 1 cut(s) 1320
Fnu4HI GCNGC 4 cut(s) 414, 1001, 1179, 1488
FokI GGATG 5 cut(s) 18, 441, 652, 749, 850
Fsp4HI GCNGC 4 cut(s) 414, 1001, 1179, 1488
GlaI GCGC 2 cut(s) 1206, 1447
GluI GCNGC 4 cut(s) 414, 1001, 1179, 1488
HaeII RGCGCY 1 cut(s) 1449
HaeIII GGCC 3 cut(s) 324, 716, 1035
HapII CCGG 4 cut(s) 275, 295, 450, 485
HhaI GCGC 2 cut(s) 1207, 1448
Hin6I GCGC 2 cut(s) 1205, 1446
HinP1I GCGC 2 cut(s) 1205, 1446
HincII GTYRAC 1 cut(s) 370
HindII GTYRAC 1 cut(s) 370
HindIII AAGCTT 1 cut(s) 913
HinfI GANTC 1 cut(s) 741
HpaII CCGG 4 cut(s) 275, 295, 450, 485
HphI GGTGA 5 cut(s) 169, 238, 439, 602, 1115
Hpy166II GTNNAC 5 cut(s) 370, 1233, 1321, 1396, 1428
Hpy188I TCNGA 5 cut(s) 84, 746, 1112, 1241, 1675
Hpy8I GTNNAC 5 cut(s) 370, 1233, 1321, 1396, 1428
Hpy99I CGWCG 1 cut(s) 257
HpyAV CCTTC 5 cut(s) 614, 903, 1233, 1236, 1411
HpyCH4III ACNGT 2 cut(s) 406, 928
HpyCH4IV ACGT 3 cut(s) 420, 578, 788
HpyCH4V TGCA 7 cut(s) 47, 905, 1178, 1277, 1531, 1589, 1697
HpyF10VI GCNNNNNNNGC 5 cut(s) 271, 713, 929, 1291, 1487
HpyF3I CTNAG 6 cut(s) 17, 161, 539, 1056, 1217, 1298
HpySE526I ACGT 3 cut(s) 420, 578, 788
HspAI GCGC 2 cut(s) 1205, 1446
Ksp22I TGATCA 2 cut(s) 976, 1572
LmnI GCTCC 3 cut(s) 772, 1055, 1247
Lsp1109I GCAGC 4 cut(s) 425, 987, 1190, 1499
LweI GCATC 1 cut(s) 483
MaeII ACGT 3 cut(s) 420, 578, 788
MaeIII GTNAC 2 cut(s) 1042, 1117
MboII GAAGA 6 cut(s) 527, 877, 1000, 1542, 1597, 1688
MfeI CAATTG 1 cut(s) 1359
MflI RGATCY 2 cut(s) 497, 510
MhlI GDGCHC 2 cut(s) 9, 523
MmeI TCCRAC 2 cut(s) 1117, 1315
Mph1103I ATGCAT 1 cut(s) 1591
MseI TTAA 2 cut(s) 110, 1409
MslI CAYNNNNRTG 1 cut(s) 182
MspCI CTTAAG 1 cut(s) 1408
MspI CCGG 4 cut(s) 275, 295, 450, 485
MspR9I CCNGG 4 cut(s) 295, 459, 485, 1521
MunI CAATTG 1 cut(s) 1359
Mva1269I GAATGC 1 cut(s) 1019
MvaI CCWGG 2 cut(s) 459, 1521
MwoI GCNNNNNNNGC 5 cut(s) 271, 713, 929, 1291, 1487
NciI CCSGG 2 cut(s) 295, 485
NcoI CCATGG 4 cut(s) 183, 514, 653, 1286
NlaIV GGNNCC 6 cut(s) 6, 512, 881, 1194, 1356, 1518
NsiI ATGCAT 1 cut(s) 1591
NspI RCATGY 1 cut(s) 841
NspV TTCGAA 1 cut(s) 1226
PctI GAATGC 1 cut(s) 1019
PfeI GAWTC 1 cut(s) 741
PflMI CCANNNNNTGG 1 cut(s) 723
PinAI ACCGGT 1 cut(s) 449
PkrI GCNGC 4 cut(s) 415, 1002, 1180, 1489
Psp6I CCWGG 2 cut(s) 457, 1519
PspGI CCWGG 2 cut(s) 457, 1519
PspN4I GGNNCC 6 cut(s) 6, 512, 881, 1194, 1356, 1518
PspPI GGNCC 3 cut(s) 277, 879, 1355
PsuI RGATCY 2 cut(s) 497, 510
RsaI GTAC 3 cut(s) 138, 426, 1427
RsaNI GTAC 3 cut(s) 137, 425, 1426
RseI CAYNNNNRTG 1 cut(s) 182
SaqAI TTAA 2 cut(s) 110, 1409
SatI GCNGC 4 cut(s) 414, 1001, 1179, 1488
Sau96I GGNCC 3 cut(s) 277, 879, 1355
ScaI AGTACT 1 cut(s) 426
ScrFI CCNGG 4 cut(s) 295, 459, 485, 1521
SduI GDGCHC 2 cut(s) 9, 523
SfaNI GCATC 1 cut(s) 483
SfuI TTCGAA 1 cut(s) 1226
SinI GGWCC 3 cut(s) 277, 879, 1355
SmiMI CAYNNNNRTG 1 cut(s) 182
SmlI CTYRAG 3 cut(s) 260, 752, 1408
SmoI CTYRAG 3 cut(s) 260, 752, 1408
SpeI ACTAGT 1 cut(s) 430
SsiI CCGC 1 cut(s) 995
SspI AATATT 1 cut(s) 1128
StyD4I CCNGG 4 cut(s) 293, 457, 483, 1519
StyI CCWWGG 6 cut(s) 183, 373, 514, 546, 653, 1286
TaaI ACNGT 2 cut(s) 406, 928
TaiI ACGT 3 cut(s) 423, 581, 791
TaqI TCGA 2 cut(s) 219, 1226
TaqII GACCGA 1 cut(s) 977
TatI WGTACW 3 cut(s) 136, 424, 1425
TfiI GAWTC 1 cut(s) 741
Tru1I TTAA 2 cut(s) 110, 1409
Tru9I TTAA 2 cut(s) 110, 1409
TscAI CASTG 3 cut(s) 444, 907, 1060
TseI GCWGC 4 cut(s) 413, 1000, 1178, 1487
TspDTI ATGAA 3 cut(s) 14, 1000, 1430
TspRI CASTG 3 cut(s) 444, 907, 1060
Van91I CCANNNNNTGG 1 cut(s) 723
Vha464I CTTAAG 1 cut(s) 1408
VpaK11BI GGWCC 3 cut(s) 277, 879, 1355
XapI RAATTY 1 cut(s) 215
XceI RCATGY 1 cut(s) 841
XmiI GTMKAC 1 cut(s) 1320
ZrmI AGTACT 1 cut(s) 426
Zsp2I ATGCAT 1 cut(s) 1591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.