Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0021369

Physical Location & Seq

Genomic Coordinates Reverse (-)

17384724 .. 17385215

Gene Structure 492 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGTTGGTAGATCAGCGGTCACAATTTTGGAGGCGGTTTTTCTGTTTGGAGGATAGAGCTCTGCTGTGTAGGAAGTGTGATGTTGCTATAATACCTCACTGCGAATGGTTTTGTTTCCAGTCACCGGAGGTTTTGCTGACCAGAATTAAAGTTGGGCCGAAGCCCGATCAAACTGGGTCTGATGGTGGTGGCGGTGGTGTTGCTGGGTCGTCTTCTTCTGTCAAATCGGACTCTAGGGCTGTGTCCAAATGTGAAGCAAACATTCAATTGGCGGAGGAATGCAAAGTGTCGCTGTCGAGTGTAGCTGGGATGTCTTTTGCTGGTGGTTCTGCAGCTGGGTCTGTTCCACAGTGGCCTATGGATGAGTTTATGGGATTCACTTATTTCGATCAGAGCATTGGGTACATGGATAATGGATCGTCTAAGGTTTGTGCTCATTGGTTACAATGTGAAACTGATTATACATTGGATAGTAATTTCGTATTGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000988 GO:0000989 GO:0003674 GO:0008150 GO:0009889 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

163

Amino Acids

17.86

Weight (kDa)

5.13

Isoelectric Point (pI)

51.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0021369)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0471561
rosa_laevigata	RLG00000034117
rosa_multiflora	Rmu_sc0001715.1_g000006
rosa_samantha	Rh3DG180700 Rh4AG061600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	16, 34, 192, 272
AclWI	GGATC	1 cut(s)	424
AfaI	GTAC	1 cut(s)	404
AfiI	CCNNNNNNNGG	1 cut(s)	124
AgsI	TTSAA	1 cut(s)	266
AluBI	AGCT	3 cut(s)	59, 305, 335
AluI	AGCT	3 cut(s)	59, 305, 335
Alw21I	GWGCWC	2 cut(s)	61, 436
AlwI	GGATC	1 cut(s)	424
AoxI	GGCC	2 cut(s)	155, 353
ApeKI	GCWGC	1 cut(s)	332
AspS9I	GGNCC	1 cut(s)	155
AsuHPI	GGTGA	1 cut(s)	114
BanII	GRGCYC	1 cut(s)	61
BbsI	GAAGAC	1 cut(s)	204
Bbv12I	GWGCWC	2 cut(s)	61, 436
BbvI	GCAGC	1 cut(s)	344
BccI	CCATC	1 cut(s)	176
BfaI	CTAG	1 cut(s)	234
BfmI	CTRYAG	1 cut(s)	330
BisI	GCNGC	1 cut(s)	333
BlsI	GCNGC	1 cut(s)	334
BmgT120I	GGNCC	1 cut(s)	155
BmrI	ACTGGG	1 cut(s)	183
BmuI	ACTGGG	1 cut(s)	183
BpiI	GAAGAC	1 cut(s)	204
BsaWI	WCCGGW	1 cut(s)	124
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
Bse1I	ACTGG	2 cut(s)	118, 178
BseGI	GGATG	2 cut(s)	315, 367
BseLI	CCNNNNNNNGG	1 cut(s)	124
BseNI	ACTGG	2 cut(s)	118, 178
BseXI	GCAGC	1 cut(s)	344
BseYI	CCCAGC	3 cut(s)	203, 305, 335
BshFI	GGCC	2 cut(s)	157, 355
BsiHKAI	GWGCWC	2 cut(s)	61, 436
BsiSI	CCGG	1 cut(s)	125
BslI	CCNNNNNNNGG	1 cut(s)	124
BsmI	GAATGC	1 cut(s)	284
BsnI	GGCC	2 cut(s)	157, 355
Bsp1286I	GDGCHC	2 cut(s)	61, 436
Bsp143I	GATC	4 cut(s)	10, 166, 388, 416
BspACI	CCGC	4 cut(s)	16, 34, 192, 272
BspANI	GGCC	2 cut(s)	157, 355
BspMAI	CTGCAG	1 cut(s)	334
BspPI	GGATC	1 cut(s)	424
BsrI	ACTGG	2 cut(s)	118, 178
BssMI	GATC	4 cut(s)	10, 166, 388, 416
Bst4CI	ACNGT	1 cut(s)	351
BstDEI	CTNAG	1 cut(s)	423
BstF5I	GGATG	2 cut(s)	315, 367
BstKTI	GATC	4 cut(s)	13, 169, 391, 419
BstMBI	GATC	4 cut(s)	10, 166, 388, 416
BstSFI	CTRYAG	1 cut(s)	330
BstV1I	GCAGC	1 cut(s)	344
BstV2I	GAAGAC	1 cut(s)	204
BsuRI	GGCC	2 cut(s)	157, 355
BtsCI	GGATG	2 cut(s)	315, 367
BtsI	GCAGTG	1 cut(s)	97
BtsIMutI	CAGTG	2 cut(s)	97, 356
Cfr13I	GGNCC	1 cut(s)	155
Csp6I	GTAC	1 cut(s)	403
CviAII	CATG	1 cut(s)	406
CviJI	RGCY	7 cut(s)	59, 157, 163, 239, 305, 335, 355
CviKI_1	RGCY	7 cut(s)	59, 157, 163, 239, 305, 335, 355
CviQI	GTAC	1 cut(s)	403
DdeI	CTNAG	1 cut(s)	423
DpnI	GATC	4 cut(s)	12, 168, 390, 418
DpnII	GATC	4 cut(s)	10, 166, 388, 416
EciI	GGCGGA	1 cut(s)	287
Ecl136II	GAGCTC	1 cut(s)	59
Eco24I	GRGCYC	1 cut(s)	61
Eco53kI	GAGCTC	1 cut(s)	59
EcoICRI	GAGCTC	1 cut(s)	59
EcoT38I	GRGCYC	1 cut(s)	61
FaeI	CATG	1 cut(s)	409
FaiI	YATR	5 cut(s)	89, 359, 371, 407, 462
FatI	CATG	1 cut(s)	405
Fnu4HI	GCNGC	1 cut(s)	333
FokI	GGATG	2 cut(s)	322, 374
FriOI	GRGCYC	1 cut(s)	61
Fsp4HI	GCNGC	1 cut(s)	333
FspBI	CTAG	1 cut(s)	234
GluI	GCNGC	1 cut(s)	333
GsaI	CCCAGC	3 cut(s)	207, 309, 339
HaeIII	GGCC	2 cut(s)	157, 355
HapII	CCGG	1 cut(s)	125
Hin1II	CATG	1 cut(s)	409
HinfI	GANTC	2 cut(s)	230, 375
HpaII	CCGG	1 cut(s)	125
HphI	GGTGA	1 cut(s)	114
Hpy188I	TCNGA	3 cut(s)	181, 229, 393
HpyCH4III	ACNGT	1 cut(s)	351
HpyCH4V	TGCA	2 cut(s)	282, 332
HpyF3I	CTNAG	1 cut(s)	423
Hsp92II	CATG	1 cut(s)	409
Kzo9I	GATC	4 cut(s)	10, 166, 388, 416
LpnPI	CCDG	8 cut(s)	131, 138, 154, 159, 189, 291, 306, 321
Lsp1109I	GCAGC	1 cut(s)	344
MaeI	CTAG	1 cut(s)	234
MaeIII	GTNAC	3 cut(s)	18, 120, 441
MalI	GATC	4 cut(s)	12, 168, 390, 418
MboI	GATC	4 cut(s)	10, 166, 388, 416
MboII	GAAGA	2 cut(s)	204, 207
MfeI	CAATTG	1 cut(s)	266
MhlI	GDGCHC	2 cut(s)	61, 436
MluCI	AATT	4 cut(s)	23, 144, 266, 475
MlyI	GAGTC	1 cut(s)	224
MnlI	CCTC	5 cut(s)	24, 43, 105, 121, 268
MseI	TTAA	1 cut(s)	147
MspA1I	CMGCKG	2 cut(s)	16, 335
MspI	CCGG	1 cut(s)	125
MunI	CAATTG	1 cut(s)	266
Mva1269I	GAATGC	1 cut(s)	284
NdeII	GATC	4 cut(s)	10, 166, 388, 416
NlaIII	CATG	1 cut(s)	409
NmuCI	GTSAC	2 cut(s)	18, 120
PctI	GAATGC	1 cut(s)	284
PfeI	GAWTC	1 cut(s)	375
PkrI	GCNGC	1 cut(s)	334
PleI	GAGTC	1 cut(s)	224
PpsI	GAGTC	1 cut(s)	224
Psp124BI	GAGCTC	1 cut(s)	61
PspFI	CCCAGC	3 cut(s)	203, 305, 335
PspPI	GGNCC	1 cut(s)	155
PstI	CTGCAG	1 cut(s)	334
PvuII	CAGCTG	1 cut(s)	335
RsaI	GTAC	1 cut(s)	404
RsaNI	GTAC	1 cut(s)	403
SacI	GAGCTC	1 cut(s)	61
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	1 cut(s)	333
Sau3AI	GATC	4 cut(s)	10, 166, 388, 416
Sau96I	GGNCC	1 cut(s)	155
SchI	GAGTC	1 cut(s)	224
SduI	GDGCHC	2 cut(s)	61, 436
SetI	ASST	6 cut(s)	61, 97, 132, 307, 337, 429
SfcI	CTRYAG	1 cut(s)	330
Sse9I	AATT	4 cut(s)	23, 144, 266, 475
SsiI	CCGC	4 cut(s)	16, 34, 192, 272
SspMI	CTAG	1 cut(s)	234
SstI	GAGCTC	1 cut(s)	61
TaaI	ACNGT	1 cut(s)	351
TaqI	TCGA	2 cut(s)	296, 387
TasI	AATT	4 cut(s)	23, 144, 266, 475
TfiI	GAWTC	1 cut(s)	375
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TscAI	CASTG	2 cut(s)	104, 356
TseFI	GTSAC	2 cut(s)	18, 120
TseI	GCWGC	1 cut(s)	332
Tsp45I	GTSAC	2 cut(s)	18, 120
TspRI	CASTG	2 cut(s)	104, 356
XspI	CTAG	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.