Rh3DG180700

salt tolerance-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0021369
Physical Location & Seq
Forward (+)
16092562 .. 16093577
1016 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG180700.1

Sequence Viewer

Length: 582 bp
ATGGCGAGCGGCGAAACGAGGACGACGATGACGTCGATGGAGGTGATTCTCGGTGAAGGCGCAGATCTGACTCCATCGATTGTCGCCAATGTTGGTAGATCAGCGGTCGCAATTTTGGAGGTGGTTGGGTATTTTTTTTTCTGTTTGGAGGATAGAGCTCTGCTGTGTAGGAAGTGTGATGTTGCTATAATACCTCACTGCGAATGGTTTTGTTTCCGGTCACCGGAGGTTTTGCTGACCAGAATTAAAGTTAGGCCGAAGCCTGATCAAACTGGGTCTGATGGTGGTGGCGGTGGTGTTGCTAGGTCGTCTTCTTCTGTCAAATCGGACTCTGGGGCTGTGTCCAAATGTGAAGCAAACATTCAATTGGCGGAGGAATGCAAAGTGGCACTGTCGAGTGTAGCTGGGATGTCTTTTGCTGGTGGTTCTGCAGCTGGGTCTGTTCCACAGTGGCCTATGGATGAGTTTATGGGATTCACTTATTTCGATCAGAGCATTGGGTACATGGATAATGGATCGTCTAAGGGCTTGTACTCTAGGCTAACTGTGGTAAACTTGGGGATTCTGATTCATCAATTTTAA

Protein Analysis

193

Amino Acids

20.53

Weight (kDa)

5.2

Isoelectric Point (pI)

44.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0021369)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0471561
rosa_laevigata RLG00000034117
rosa_multiflora Rmu_sc0001715.1_g000006
rosa_samantha Rh3DG180700 Rh4AG061600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 31
AatII GACGTC 1 cut(s) 35
AccBSI CCGCTC 1 cut(s) 9
AciI CCGC 4 cut(s) 9, 104, 291, 371
AclWI GGATC 1 cut(s) 523
AcyI GRCGYC 1 cut(s) 32
AfaI GTAC 2 cut(s) 503, 533
AfiI CCNNNNNNNGG 1 cut(s) 223
AgsI TTSAA 1 cut(s) 365
AluBI AGCT 3 cut(s) 158, 404, 434
AluI AGCT 3 cut(s) 158, 404, 434
Alw21I GWGCWC 1 cut(s) 160
AlwI GGATC 1 cut(s) 523
AoxI GGCC 2 cut(s) 254, 452
ApeKI GCWGC 1 cut(s) 431
AspLEI GCGC 1 cut(s) 62
AsuHPI GGTGA 3 cut(s) 55, 65, 213
BanII GRGCYC 1 cut(s) 160
BbsI GAAGAC 1 cut(s) 303
Bbv12I GWGCWC 1 cut(s) 160
BbvI GCAGC 1 cut(s) 443
BccI CCATC 3 cut(s) 31, 82, 275
BclI TGATCA 1 cut(s) 265
BfaI CTAG 2 cut(s) 303, 537
BfmI CTRYAG 1 cut(s) 429
BglII AGATCT 1 cut(s) 64
BisI GCNGC 2 cut(s) 10, 432
BlsI GCNGC 2 cut(s) 11, 433
BmrI ACTGGG 1 cut(s) 282
BmuI ACTGGG 1 cut(s) 282
BpiI GAAGAC 1 cut(s) 303
Bsa29I ATCGAT 1 cut(s) 77
BsaHI GRCGYC 1 cut(s) 32
BsaWI WCCGGW 2 cut(s) 216, 223
Bsc4I CCNNNNNNNGG 1 cut(s) 223
Bse1I ACTGG 1 cut(s) 277
BseCI ATCGAT 1 cut(s) 77
BseGI GGATG 2 cut(s) 414, 466
BseLI CCNNNNNNNGG 1 cut(s) 223
BseNI ACTGG 1 cut(s) 277
BseXI GCAGC 1 cut(s) 443
BseYI CCCAGC 2 cut(s) 404, 434
Bsh1285I CGRYCG 1 cut(s) 108
BshFI GGCC 2 cut(s) 256, 454
BshVI ATCGAT 1 cut(s) 77
BsiEI CGRYCG 1 cut(s) 108
BsiHKAI GWGCWC 1 cut(s) 160
BsiSI CCGG 2 cut(s) 217, 224
BslI CCNNNNNNNGG 1 cut(s) 223
BsmI GAATGC 1 cut(s) 383
BsnI GGCC 2 cut(s) 256, 454
Bsp1286I GDGCHC 1 cut(s) 160
Bsp143I GATC 5 cut(s) 64, 98, 265, 487, 515
BspACI CCGC 4 cut(s) 9, 104, 291, 371
BspANI GGCC 2 cut(s) 256, 454
BspDI ATCGAT 1 cut(s) 77
BspMAI CTGCAG 1 cut(s) 433
BspPI GGATC 1 cut(s) 523
BsrBI CCGCTC 1 cut(s) 9
BsrI ACTGG 1 cut(s) 277
BssMI GATC 5 cut(s) 64, 98, 265, 487, 515
BssNI GRCGYC 1 cut(s) 32
Bst4CI ACNGT 3 cut(s) 393, 450, 547
BstACI GRCGYC 1 cut(s) 32
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 1 cut(s) 522
BstEII GGTNACC 1 cut(s) 219
BstF5I GGATG 2 cut(s) 414, 466
BstHHI GCGC 1 cut(s) 62
BstKTI GATC 5 cut(s) 67, 101, 268, 490, 518
BstMBI GATC 5 cut(s) 64, 98, 265, 487, 515
BstMCI CGRYCG 1 cut(s) 108
BstPI GGTNACC 1 cut(s) 219
BstSFI CTRYAG 1 cut(s) 429
BstV1I GCAGC 1 cut(s) 443
BstV2I GAAGAC 1 cut(s) 303
BstX2I RGATCY 1 cut(s) 64
BstYI RGATCY 1 cut(s) 64
Bsu15I ATCGAT 1 cut(s) 77
BsuRI GGCC 2 cut(s) 256, 454
BsuTUI ATCGAT 1 cut(s) 77
BtsCI GGATG 2 cut(s) 414, 466
BtsI GCAGTG 1 cut(s) 196
BtsIMutI CAGTG 3 cut(s) 196, 389, 455
Cac8I GCNNGC 1 cut(s) 7
CfoI GCGC 1 cut(s) 62
ClaI ATCGAT 1 cut(s) 77
Csp6I GTAC 2 cut(s) 502, 532
CviAII CATG 1 cut(s) 505
CviJI RGCY 9 cut(s) 158, 256, 262, 338, 404, 434, 454, 528, 541
CviKI_1 RGCY 9 cut(s) 158, 256, 262, 338, 404, 434, 454, 528, 541
CviQI GTAC 2 cut(s) 502, 532
DdeI CTNAG 1 cut(s) 522
DpnI GATC 5 cut(s) 66, 100, 267, 489, 517
DpnII GATC 5 cut(s) 64, 98, 265, 487, 515
DrdI GACNNNNNNGTC 1 cut(s) 31
DseDI GACNNNNNNGTC 1 cut(s) 31
EciI GGCGGA 1 cut(s) 386
Ecl136II GAGCTC 1 cut(s) 158
Eco24I GRGCYC 1 cut(s) 160
Eco53kI GAGCTC 1 cut(s) 158
Eco91I GGTNACC 1 cut(s) 219
EcoICRI GAGCTC 1 cut(s) 158
EcoO65I GGTNACC 1 cut(s) 219
EcoT38I GRGCYC 1 cut(s) 160
FaeI CATG 1 cut(s) 508
FaiI YATR 4 cut(s) 188, 458, 470, 506
FatI CATG 1 cut(s) 504
FbaI TGATCA 1 cut(s) 265
Fnu4HI GCNGC 2 cut(s) 10, 432
FokI GGATG 2 cut(s) 421, 473
FriOI GRGCYC 1 cut(s) 160
Fsp4HI GCNGC 2 cut(s) 10, 432
FspBI CTAG 2 cut(s) 303, 537
GlaI GCGC 1 cut(s) 61
GluI GCNGC 2 cut(s) 10, 432
GsaI CCCAGC 2 cut(s) 408, 438
HaeIII GGCC 2 cut(s) 256, 454
HapII CCGG 2 cut(s) 217, 224
HhaI GCGC 1 cut(s) 62
Hin1I GRCGYC 1 cut(s) 32
Hin1II CATG 1 cut(s) 508
Hin6I GCGC 1 cut(s) 60
HinP1I GCGC 1 cut(s) 60
HinfI GANTC 6 cut(s) 46, 70, 329, 474, 562, 568
HpaII CCGG 2 cut(s) 217, 224
HphI GGTGA 3 cut(s) 55, 65, 213
Hpy166II GTNNAC 1 cut(s) 553
Hpy188I TCNGA 5 cut(s) 69, 280, 328, 492, 567
Hpy8I GTNNAC 1 cut(s) 553
Hpy99I CGWCG 2 cut(s) 28, 37
HpyAV CCTTC 1 cut(s) 50
HpyCH4III ACNGT 3 cut(s) 393, 450, 547
HpyCH4IV ACGT 1 cut(s) 32
HpyCH4V TGCA 2 cut(s) 381, 431
HpyF3I CTNAG 1 cut(s) 522
HpySE526I ACGT 1 cut(s) 32
Hsp92I GRCGYC 1 cut(s) 32
Hsp92II CATG 1 cut(s) 508
HspAI GCGC 1 cut(s) 60
Ksp22I TGATCA 1 cut(s) 265
Kzo9I GATC 5 cut(s) 64, 98, 265, 487, 515
LpnPI CCDG 9 cut(s) 230, 237, 253, 258, 276, 318, 390, 405, 420
Lsp1109I GCAGC 1 cut(s) 443
MaeI CTAG 2 cut(s) 303, 537
MaeII ACGT 1 cut(s) 32
MaeIII GTNAC 1 cut(s) 219
MalI GATC 5 cut(s) 66, 100, 267, 489, 517
MbiI CCGCTC 1 cut(s) 9
MboI GATC 5 cut(s) 64, 98, 265, 487, 515
MboII GAAGA 2 cut(s) 303, 306
MfeI CAATTG 1 cut(s) 365
MflI RGATCY 1 cut(s) 64
MhlI GDGCHC 1 cut(s) 160
MluCI AATT 4 cut(s) 111, 243, 365, 575
MlyI GAGTC 2 cut(s) 64, 323
MnlI CCTC 7 cut(s) 12, 34, 112, 142, 204, 220, 367
MseI TTAA 2 cut(s) 246, 580
MspA1I CMGCKG 2 cut(s) 104, 434
MspI CCGG 2 cut(s) 217, 224
MunI CAATTG 1 cut(s) 365
Mva1269I GAATGC 1 cut(s) 383
NdeII GATC 5 cut(s) 64, 98, 265, 487, 515
NlaIII CATG 1 cut(s) 508
NmuCI GTSAC 1 cut(s) 219
PcsI WCGNNNNNNNCGW 3 cut(s) 23, 29, 32
PctI GAATGC 1 cut(s) 383
PfeI GAWTC 4 cut(s) 46, 474, 562, 568
PkrI GCNGC 2 cut(s) 11, 433
PleI GAGTC 2 cut(s) 64, 323
PpsI GAGTC 2 cut(s) 64, 323
Psp124BI GAGCTC 1 cut(s) 160
PspEI GGTNACC 1 cut(s) 219
PspFI CCCAGC 2 cut(s) 404, 434
PstI CTGCAG 1 cut(s) 433
PsuI RGATCY 1 cut(s) 64
PvuII CAGCTG 1 cut(s) 434
RsaI GTAC 2 cut(s) 503, 533
RsaNI GTAC 2 cut(s) 502, 532
SacI GAGCTC 1 cut(s) 160
SaqAI TTAA 2 cut(s) 246, 580
SatI GCNGC 2 cut(s) 10, 432
Sau3AI GATC 5 cut(s) 64, 98, 265, 487, 515
SchI GAGTC 2 cut(s) 64, 323
SduI GDGCHC 1 cut(s) 160
SetI ASST 9 cut(s) 35, 45, 123, 160, 196, 231, 308, 406, 436
SfcI CTRYAG 1 cut(s) 429
Sse9I AATT 4 cut(s) 111, 243, 365, 575
SsiI CCGC 4 cut(s) 9, 104, 291, 371
SspMI CTAG 2 cut(s) 303, 537
SstI GAGCTC 1 cut(s) 160
TaaI ACNGT 3 cut(s) 393, 450, 547
TaiI ACGT 1 cut(s) 35
TaqI TCGA 4 cut(s) 35, 77, 395, 486
TasI AATT 4 cut(s) 111, 243, 365, 575
TatI WGTACW 1 cut(s) 531
TauI GCSGC 1 cut(s) 12
TfiI GAWTC 4 cut(s) 46, 474, 562, 568
Tru1I TTAA 2 cut(s) 246, 580
Tru9I TTAA 2 cut(s) 246, 580
TscAI CASTG 3 cut(s) 203, 396, 455
TseFI GTSAC 1 cut(s) 219
TseI GCWGC 1 cut(s) 431
Tsp45I GTSAC 1 cut(s) 219
TspDTI ATGAA 1 cut(s) 560
TspRI CASTG 3 cut(s) 203, 396, 455
XspI CTAG 2 cut(s) 303, 537
ZraI GACGTC 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.