Rmu_sc0001715.1_g000006

salt tolerance-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001715.1
OG0021369
Physical Location & Seq
Reverse (-)
7666 .. 10939
3274 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001715.1_g000006.1.cds

Sequence Viewer

Length: 861 bp
atgaggacgacgatgacgtcaatggaggtgattctcggtgaaggcgcagatccggctccatcgatcgtcgccaatgttggtggatcggaggtcgcaattttggaggcggttgggaagtgtgatgttgctataatacctcactgtgaatggttttgtttctggtcaccggaggttttgctgaccaaaattaaagttgggccagagcccgatcaacctaggtctgatggtggtggcggtggtgttgctggctgggtctgttccacagtggatgagtttatgggattcactgatttcgatcagagctttgggtacatggataatggatcgtctaagtgcgactactgtaaggatattggcgagcttgaagttatgcaaggttcacttcttacgtacctacacagaataatgtgcttccgccgcaagcagcggcggtgcaatattgcagagcttgaatcccacttgagacagcttagttgggagctagaggacttgtataatggaaaagaaaccagggctgccattgaagaactaaaaagacccgatcagagagcaaaaatgaaagacaatttaagacgactaatggacgatggcgcaaagctggctgaggagttgtcgtcgttgcctcctcctcgtgaacacctctccataaatttttacaaaatacgaattgagtggttgaacaatcaaaaagcattagcggttgatttggttgctattccgaattccaagcacgttattctaacaggtggggctagacccagaaatattggcttaatggcctggcccaaaccagttatgggtccgacacagctcgagtatgacatattatgggccatggcctggctcatttctataatgtag

Protein Analysis

286

Amino Acids

32.1

Weight (kDa)

5.39

Isoelectric Point (pI)

46.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021369)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0471561
rosa_laevigata RLG00000034117
rosa_multiflora Rmu_sc0001715.1_g000006
rosa_samantha Rh3DG180700 Rh4AG061600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 16
AatII GACGTC 1 cut(s) 20
AccB7I CCANNNNNTGG 1 cut(s) 840
AciI CCGC 7 cut(s) 107, 234, 415, 418, 427, 430, 698
AclWI GGATC 3 cut(s) 44, 91, 331
AcsI RAATTY 2 cut(s) 649, 721
AcyI GRCGYC 1 cut(s) 17
AfaI GTAC 2 cut(s) 311, 392
AfiI CCNNNNNNNGG 2 cut(s) 797, 840
AgsI TTSAA 4 cut(s) 365, 452, 524, 679
AjnI CCWGG 3 cut(s) 509, 779, 839
AluBI AGCT 7 cut(s) 303, 361, 448, 469, 481, 598, 811
AluI AGCT 7 cut(s) 303, 361, 448, 469, 481, 598, 811
Alw26I GTCTC 1 cut(s) 457
AlwI GGATC 3 cut(s) 44, 91, 331
Ama87I CYCGRG 1 cut(s) 812
AoxI GGCC 5 cut(s) 197, 777, 782, 831, 837
ApeKI GCWGC 2 cut(s) 424, 515
ApoI RAATTY 2 cut(s) 649, 721
AspA2I CCTAGG 1 cut(s) 215
AspLEI GCGC 2 cut(s) 47, 593
AspS9I GGNCC 4 cut(s) 197, 783, 800, 831
AsuHPI GGTGA 3 cut(s) 40, 50, 156
AvaI CYCGRG 1 cut(s) 812
AvaII GGWCC 1 cut(s) 800
AvrII CCTAGG 1 cut(s) 215
BanII GRGCYC 1 cut(s) 207
BauI CACGAG 1 cut(s) 630
BbvCI CCTCAGC 1 cut(s) 603
BbvI GCAGC 2 cut(s) 436, 502
BccI CCATC 3 cut(s) 67, 218, 581
BciT130I CCWGG 3 cut(s) 511, 781, 841
BcoDI GTCTC 1 cut(s) 457
BfaI CTAG 3 cut(s) 216, 482, 753
BisI GCNGC 4 cut(s) 418, 425, 428, 516
BlnI CCTAGG 1 cut(s) 215
BlsI GCNGC 4 cut(s) 419, 426, 429, 517
Bme1390I CCNGG 3 cut(s) 511, 781, 841
Bme18I GGWCC 1 cut(s) 800
BmeT110I CYCGRG 1 cut(s) 812
BmgT120I GGNCC 4 cut(s) 197, 783, 800, 831
BmiI GGNNCC 2 cut(s) 57, 801
BmrFI CCNGG 3 cut(s) 511, 781, 841
Bpu10I CCTNAGC 1 cut(s) 603
BpuEI CTTGAG 1 cut(s) 481
Bsa29I ATCGAT 1 cut(s) 62
BsaAI YACGTR 1 cut(s) 390
BsaBI GATNNNNATC 1 cut(s) 294
BsaHI GRCGYC 1 cut(s) 17
BsaJI CCNNGG 3 cut(s) 215, 510, 834
BsaWI WCCGGW 1 cut(s) 166
BsaXI ACNNNNNCTCC 2 cut(s) 599, 629
Bsc4I CCNNNNNNNGG 2 cut(s) 797, 840
Bse1I ACTGG 1 cut(s) 791
Bse8I GATNNNNATC 1 cut(s) 294
BseBI CCWGG 3 cut(s) 511, 781, 841
BseCI ATCGAT 1 cut(s) 62
BseDI CCNNGG 3 cut(s) 215, 510, 834
BseGI GGATG 1 cut(s) 274
BseJI GATNNNNATC 1 cut(s) 294
BseLI CCNNNNNNNGG 2 cut(s) 797, 840
BseMII CTCAG 1 cut(s) 594
BseNI ACTGG 1 cut(s) 791
BseRI GAGGAG 3 cut(s) 615, 618, 620
BseXI GCAGC 2 cut(s) 436, 502
BseYI CCCAGC 1 cut(s) 249
Bsh1285I CGRYCG 1 cut(s) 66
BshFI GGCC 5 cut(s) 199, 779, 784, 833, 839
BshVI ATCGAT 1 cut(s) 62
BsiEI CGRYCG 1 cut(s) 66
BsiHKCI CYCGRG 1 cut(s) 812
BsiSI CCGG 2 cut(s) 53, 167
BslI CCNNNNNNNGG 2 cut(s) 797, 840
BsmAI GTCTC 1 cut(s) 457
BsnI GGCC 5 cut(s) 199, 779, 784, 833, 839
BsoBI CYCGRG 1 cut(s) 812
Bsp1286I GDGCHC 1 cut(s) 207
Bsp143I GATC 7 cut(s) 49, 63, 83, 208, 295, 323, 541
Bsp19I CCATGG 1 cut(s) 834
BspACI CCGC 7 cut(s) 107, 234, 415, 418, 427, 430, 698
BspANI GGCC 5 cut(s) 199, 779, 784, 833, 839
BspCNI CTCAG 1 cut(s) 595
BspDI ATCGAT 1 cut(s) 62
BspLI GGNNCC 2 cut(s) 57, 801
BspPI GGATC 3 cut(s) 44, 91, 331
BsrI ACTGG 1 cut(s) 791
BssECI CCNNGG 3 cut(s) 215, 510, 834
BssMI GATC 7 cut(s) 49, 63, 83, 208, 295, 323, 541
BssNI GRCGYC 1 cut(s) 17
BssSI CACGAG 1 cut(s) 630
BssT1I CCWWGG 2 cut(s) 215, 834
Bst2BI CACGAG 1 cut(s) 630
Bst2UI CCWGG 3 cut(s) 511, 781, 841
Bst4CI ACNGT 3 cut(s) 143, 265, 344
BstACI GRCGYC 1 cut(s) 17
BstBAI YACGTR 1 cut(s) 390
BstC8I GCNNGC 4 cut(s) 247, 359, 422, 600
BstDEI CTNAG 3 cut(s) 330, 470, 603
BstDSI CCRYGG 1 cut(s) 834
BstEII GGTNACC 1 cut(s) 162
BstF5I GGATG 1 cut(s) 274
BstHHI GCGC 2 cut(s) 47, 593
BstKTI GATC 7 cut(s) 52, 66, 86, 211, 298, 326, 544
BstMAI GTCTC 1 cut(s) 457
BstMBI GATC 7 cut(s) 49, 63, 83, 208, 295, 323, 541
BstMCI CGRYCG 1 cut(s) 66
BstMWI GCNNNNNNNGC 3 cut(s) 53, 417, 599
BstNI CCWGG 3 cut(s) 511, 781, 841
BstPI GGTNACC 1 cut(s) 162
BstSCI CCNGG 3 cut(s) 509, 779, 839
BstSNI TACGTA 1 cut(s) 390
BstV1I GCAGC 2 cut(s) 436, 502
BstX2I RGATCY 1 cut(s) 49
BstYI RGATCY 1 cut(s) 49
Bsu15I ATCGAT 1 cut(s) 62
BsuRI GGCC 5 cut(s) 199, 779, 784, 833, 839
BsuTUI ATCGAT 1 cut(s) 62
BtgI CCRYGG 1 cut(s) 834
BtsCI GGATG 1 cut(s) 274
BtsIMutI CAGTG 3 cut(s) 139, 270, 285
Cac8I GCNNGC 4 cut(s) 247, 359, 422, 600
CfoI GCGC 2 cut(s) 47, 593
Cfr13I GGNCC 4 cut(s) 197, 783, 800, 831
ClaI ATCGAT 1 cut(s) 62
Csp6I GTAC 2 cut(s) 310, 391
CspCI CAANNNNNGTGG 2 cut(s) 61, 96
CviAII CATG 2 cut(s) 313, 835
CviQI GTAC 2 cut(s) 310, 391
DdeI CTNAG 3 cut(s) 330, 470, 603
DpnI GATC 7 cut(s) 51, 65, 85, 210, 297, 325, 543
DpnII GATC 7 cut(s) 49, 63, 83, 208, 295, 323, 541
DrdI GACNNNNNNGTC 1 cut(s) 16
DseDI GACNNNNNNGTC 1 cut(s) 16
EciI GGCGGA 1 cut(s) 404
Eco105I TACGTA 1 cut(s) 390
Eco130I CCWWGG 2 cut(s) 215, 834
Eco24I GRGCYC 1 cut(s) 207
Eco47I GGWCC 1 cut(s) 800
Eco88I CYCGRG 1 cut(s) 812
Eco91I GGTNACC 1 cut(s) 162
EcoO65I GGTNACC 1 cut(s) 162
EcoRI GAATTC 1 cut(s) 721
EcoRII CCWGG 3 cut(s) 509, 779, 839
EcoT14I CCWWGG 2 cut(s) 215, 834
EcoT38I GRGCYC 1 cut(s) 207
ErhI CCWWGG 2 cut(s) 215, 834
FaeI CATG 2 cut(s) 316, 838
FalI AAGNNNNNCTT 2 cut(s) 366, 398
FatI CATG 2 cut(s) 312, 834
Fnu4HI GCNGC 4 cut(s) 418, 425, 428, 516
FokI GGATG 1 cut(s) 281
FriOI GRGCYC 1 cut(s) 207
Fsp4HI GCNGC 4 cut(s) 418, 425, 428, 516
FspBI CTAG 3 cut(s) 216, 482, 753
GlaI GCGC 2 cut(s) 46, 592
GluI GCNGC 4 cut(s) 418, 425, 428, 516
GsaI CCCAGC 1 cut(s) 253
HaeIII GGCC 5 cut(s) 199, 779, 784, 833, 839
HapII CCGG 2 cut(s) 53, 167
HhaI GCGC 2 cut(s) 47, 593
Hin1I GRCGYC 1 cut(s) 17
Hin1II CATG 2 cut(s) 316, 838
Hin6I GCGC 2 cut(s) 45, 591
HinP1I GCGC 2 cut(s) 45, 591
HinfI GANTC 3 cut(s) 31, 282, 452
HpaII CCGG 2 cut(s) 53, 167
HphI GGTGA 3 cut(s) 40, 50, 156
Hpy166II GTNNAC 2 cut(s) 380, 635
Hpy188I TCNGA 6 cut(s) 88, 223, 300, 546, 720, 804
Hpy188III TCNNGA 1 cut(s) 632
Hpy8I GTNNAC 2 cut(s) 380, 635
Hpy99I CGWCG 3 cut(s) 13, 71, 619
HpyAV CCTTC 1 cut(s) 35
HpyCH4III ACNGT 3 cut(s) 143, 265, 344
HpyCH4IV ACGT 3 cut(s) 17, 389, 732
HpyCH4V TGCA 3 cut(s) 373, 435, 443
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 417, 599
HpyF3I CTNAG 3 cut(s) 330, 470, 603
HpySE526I ACGT 3 cut(s) 17, 389, 732
Hsp92I GRCGYC 1 cut(s) 17
Hsp92II CATG 2 cut(s) 316, 838
HspAI GCGC 2 cut(s) 45, 591
Kzo9I GATC 7 cut(s) 49, 63, 83, 208, 295, 323, 541
LmnI GCTCC 2 cut(s) 61, 478
Lsp1109I GCAGC 2 cut(s) 436, 502
MaeI CTAG 3 cut(s) 216, 482, 753
MaeII ACGT 3 cut(s) 17, 389, 732
MaeIII GTNAC 1 cut(s) 162
MalI GATC 7 cut(s) 51, 65, 85, 210, 297, 325, 543
MboI GATC 7 cut(s) 49, 63, 83, 208, 295, 323, 541
MboII GAAGA 1 cut(s) 536
MflI RGATCY 1 cut(s) 49
MhlI GDGCHC 1 cut(s) 207
MluCI AATT 6 cut(s) 96, 186, 565, 649, 666, 721
MmeI TCCRAC 1 cut(s) 827
MseI TTAA 3 cut(s) 189, 569, 773
MspA1I CMGCKG 1 cut(s) 427
MspI CCGG 2 cut(s) 53, 167
MspR9I CCNGG 3 cut(s) 511, 781, 841
MvaI CCWGG 3 cut(s) 511, 781, 841
MwoI GCNNNNNNNGC 3 cut(s) 53, 417, 599
NcoI CCATGG 1 cut(s) 834
NdeII GATC 7 cut(s) 49, 63, 83, 208, 295, 323, 541
NlaIII CATG 2 cut(s) 316, 838
NlaIV GGNNCC 2 cut(s) 57, 801
NmuCI GTSAC 1 cut(s) 162
PaeR7I CTCGAG 1 cut(s) 812
PcsI WCGNNNNNNNCGW 1 cut(s) 14
PfeI GAWTC 3 cut(s) 31, 282, 452
PflMI CCANNNNNTGG 1 cut(s) 840
PkrI GCNGC 4 cut(s) 419, 426, 429, 517
Ple19I CGATCG 1 cut(s) 66
Ppu21I YACGTR 1 cut(s) 390
Psp6I CCWGG 3 cut(s) 509, 779, 839
PspEI GGTNACC 1 cut(s) 162
PspFI CCCAGC 1 cut(s) 249
PspGI CCWGG 3 cut(s) 509, 779, 839
PspN4I GGNNCC 2 cut(s) 57, 801
PspPI GGNCC 4 cut(s) 197, 783, 800, 831
PspXI VCTCGAGB 1 cut(s) 812
PsuI RGATCY 1 cut(s) 49
PvuI CGATCG 1 cut(s) 66
RsaI GTAC 2 cut(s) 311, 392
RsaNI GTAC 2 cut(s) 310, 391
SaqAI TTAA 3 cut(s) 189, 569, 773
SatI GCNGC 4 cut(s) 418, 425, 428, 516
Sau3AI GATC 7 cut(s) 49, 63, 83, 208, 295, 323, 541
Sau96I GGNCC 4 cut(s) 197, 783, 800, 831
ScrFI CCNGG 3 cut(s) 511, 781, 841
SduI GDGCHC 1 cut(s) 207
Sfr274I CTCGAG 1 cut(s) 812
SinI GGWCC 1 cut(s) 800
SlaI CTCGAG 1 cut(s) 812
SmlI CTYRAG 2 cut(s) 460, 812
SmoI CTYRAG 2 cut(s) 460, 812
SnaBI TACGTA 1 cut(s) 390
Sse9I AATT 6 cut(s) 96, 186, 565, 649, 666, 721
SsiI CCGC 7 cut(s) 107, 234, 415, 418, 427, 430, 698
SspI AATATT 2 cut(s) 439, 766
SspMI CTAG 3 cut(s) 216, 482, 753
StyD4I CCNGG 3 cut(s) 509, 779, 839
StyI CCWWGG 2 cut(s) 215, 834
TaaI ACNGT 3 cut(s) 143, 265, 344
TaiI ACGT 3 cut(s) 20, 392, 735
TaqI TCGA 3 cut(s) 62, 294, 813
TasI AATT 6 cut(s) 96, 186, 565, 649, 666, 721
TauI GCSGC 2 cut(s) 420, 430
TfiI GAWTC 3 cut(s) 31, 282, 452
Tru1I TTAA 3 cut(s) 189, 569, 773
Tru9I TTAA 3 cut(s) 189, 569, 773
TscAI CASTG 3 cut(s) 146, 270, 292
TseFI GTSAC 1 cut(s) 162
TseI GCWGC 2 cut(s) 424, 515
Tsp45I GTSAC 1 cut(s) 162
TspDTI ATGAA 1 cut(s) 572
TspRI CASTG 3 cut(s) 146, 270, 292
Van91I CCANNNNNTGG 1 cut(s) 840
VpaK11BI GGWCC 1 cut(s) 800
XapI RAATTY 2 cut(s) 649, 721
XcmI CCANNNNNNNNNTGG 1 cut(s) 793
XhoI CTCGAG 1 cut(s) 812
XmaJI CCTAGG 1 cut(s) 215
XspI CTAG 3 cut(s) 216, 482, 753
ZraI GACGTC 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.