Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019250

Physical Location & Seq

Genomic Coordinates Forward (+)

18192935 .. 18196102

Gene Structure 3168 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2226 bp

ATGAAAACCTATATAAACCCAACACTCTACTCCAAACCTAACCTTAATCCTAGACTTTCACTAAAGATTCTCCGGACACCCTTCTCGTCCCTTGTCCCAGCCACCATGCATATGATCGTAACCACGCCCGCCGGCGACTCCGCCTTCACCAACCACGCCTACTGCTCGCCGTCCGATCTTCCCACCTTCGCCGTCCCTCAATCCGGCCGCAAGAGCGGCCACATTGCTCTGAATGCGACCCAGCAAAAGCAAGCTGGGGTTTCTGTTGGTGACCAAGTTTCTGCCACCAGATTTATTCCGCCCGAGGAGTGTTTTAACTTGGCACTGCTCAAGATAGAGATAGAGTTGCTGGGGAAAAGAACCAAAACTCGACAGGTCGATGCTGTTTTCCTCGACGAGTTACTTAGAAACAAGTTCATGTACCAGGTTATGATGGCAGGACAAAAAGTATCATTCAAGTCTGATGGAGGTCGTGAATACGTTTTCACAGTCCATCAAGCTGCAGTAGAGGGACAGGAAAAGGTTGATGCTGATCTTGAAAGAGGGATGATTTCATCAGGGACATACTTCATCTTCGAGACACCAAAGGGTTCAAATGGACTAAAGATACTAAATCAACGTAAAATCTTCACGCAGAAGGAACTTAATCTTCAAAAACTTGGCATCGGTGGATTAAATGCAGAGTTTGAAAGTATATTTCGAAGAGCTTTTGCCTCCCGTGTACTCCCTCATCATGTGGTGAATAAATTGGGGATTAAGCATGTGAAGGGCATGCTGCTTTATGGACCTCCCGGTACTGGAAAAACTCTGGTGGCTCGGCAAATAGGGAAAATTTTGAATGGGAAAGATCCAAAGATCGTCAATGGCCCTGAAGTGTTGGACTGTTACGTTGGTGAAAGTGAGAAGAATGTTAGGGAGCTATTTGCTGATGCTGAACAAGATCAAATAGTTCATGGGGATGAAAGTGATTTGCATGTCATAATATTTGATGAAATTGATGCAATTTGTAAGAAAAGATCAGGTTCCAGCCGTGATAGTTCACGCATTCATGATAATATTGTGAACACATTACTTACCAAGATGGATGGGGTGGAGCCTCTCAATAATATTCTGATTATTGGATTGACTAACAGAAAGGAGTTGCTGGATGAAGCCCTTTTGAGACCAGGACGTCTGGAAGTTCAAATTCAGATAGGCCTTCCTGATAAAAAAGGTCGCCTACAGATTCTTCAAATTCATACAAACAAGATAAAGGAGAGCTCTTATCTTGCTCCTGACGTGAACCTTCGAGAGCTTGCTACTCGTGCAGAAAACTATAGCGGTGCAGAACTTGAAGGTGTTGTTAGAAGTGCTGTGTCATTTGCTTTTAATAGACAACTGAGTCTGGACGATCTTAAGAAGCCAGTGGACGAGGAGAATATTAAAGTTACTATGGATGATTTTCATCGTGCACTTCAAGAAATTAGACCTACTTATGGAGCCTTGGCAGAGGAGCTTGAACGATGCAGGTTAAATGGCATTGTGAATTGTGGTGATCGACATAGGCACGCTTATGACAGAGCTATGCTACTTGTGGAGCAAGTTAAATCAAGTGAAGGAAGTCCTCTTGTCAAATGCCTTCTAGAGGGCCCTAGTGGCACTGGCAAATCTGCCTTAGCAGCTACCATTGGCATCCACAGCCGCTTTCCATTTGTCAGGATTATTTCGGCTGAGTCCATGATTGGTCTTCATGACGAGAGGGCAAAGTGTGTTCACCTTGAAAACGTCTTCGAGGAAGCTTACAAGTCACAATTGAGCATCATTATTTTGGATGACGTTGAGAGGTTGATGGAGTTTATTCCTATTGGTCCAAGATTTTCAACCATGATATATCAAACACTATGGGGCCTTCTTAAGCGCTTTCCTCCAAAGGGGAACAAGCTTCTGGTGATTGGAACAACTAGTGAATTTGAATTCTTGGACTCAATTCGCTTTTGCAAGACATTCTCTCACACTTACAATGTTCCTACACTAACGAGTGAGGATGCAAAGAAGGTGCTAGAGCAGTTGCAAGTTTTTGCTGATGAGGATATAAATGCAGCTGCTGATGCCCTGAATGATATGCCTATCCAGAAGCTCTATACGTTAATTGAGACAGCAGGCCAATGTGCCAAGCCTGTTTACTCTGGAAAAAAGAAAATAAATATCAGTGACTTCTGTAATTGCCTTCGAGATATTGGGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0005886 GO:0005911 GO:0009506 GO:0012505 GO:0016020 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04138 ko04721 ko04727 ko04962 map04138 map04721 map04727 map04962

Pfam Domains

Protein Families

AAA CDC48_2 CDC48_N

Protein Analysis

741

Amino Acids

82.64

Weight (kDa)

8.1

Isoelectric Point (pI)

37.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	258 - 399	1.4e-34	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	426 - 462	6.6e-09	AAA+ lid domain
AAA	PF00004	540 - 655	4.5e-10	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g18030
rosa_chinensis	RchiOBHm_Chr3g0472291
rosa_laevigata	RLG00000024091
rosa_rugosa	Rorug03G0123700
rosa_samantha	Rh3AG176000 Rh3BG201700 Rh3DG173600
rosa_wichuraiana	Rw3G016530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	1170, 1380
AatII	GACGTC	1 cut(s)	1174
Acc36I	ACCTGC	1 cut(s)	1497
AccBSI	CCGCTC	1 cut(s)	216
AccIII	TCCGGA	1 cut(s)	72
AciI	CCGC	7 cut(s)	129, 141, 208, 216, 299, 1320, 1681
AclWI	GGATC	1 cut(s)	842
AcoI	YGGCCR	2 cut(s)	205, 217
AcsI	RAATTY	5 cut(s)	831, 1185, 1233, 1946, 1952
AcuI	CTGAAG	1 cut(s)	891
AcyI	GRCGYC	1 cut(s)	1171
AfaI	GTAC	3 cut(s)	422, 723, 796
AfeI	AGCGCT	1 cut(s)	1898
AfiI	CCNNNNNNNGG	5 cut(s)	203, 797, 1475, 1624, 1910
AflII	CTTAAG	2 cut(s)	1394, 1892
AhlI	ACTAGT	1 cut(s)	1940
AjiI	CACGTC	1 cut(s)	1279
AjnI	CCWGG	2 cut(s)	423, 1165
Alw21I	GWGCWC	2 cut(s)	1262, 1453
Alw26I	GTCTC	3 cut(s)	572, 1156, 2126
Alw44I	GTGCAC	1 cut(s)	1449
AlwI	GGATC	1 cut(s)	842
AlwNI	CAGNNNCTG	1 cut(s)	2084
Ama87I	CYCGRG	1 cut(s)	302
Aor13HI	TCCGGA	1 cut(s)	72
Aor51HI	AGCGCT	1 cut(s)	1898
AoxI	GGCC	7 cut(s)	205, 217, 865, 1195, 1627, 1885, 2140
ApaI	GGGCCC	1 cut(s)	1631
ApaLI	GTGCAC	1 cut(s)	1449
ApeKI	GCWGC	5 cut(s)	500, 775, 1658, 2078, 2081
ApoI	RAATTY	5 cut(s)	831, 1185, 1233, 1946, 1952
AspLEI	GCGC	1 cut(s)	1899
AspS9I	GGNCC	6 cut(s)	785, 866, 1627, 1628, 1847, 1885
AsuC2I	CCSGG	1 cut(s)	792
AsuHPI	GGTGA	7 cut(s)	139, 281, 751, 905, 1544, 1745, 1939
AsuII	TTCGAA	1 cut(s)	700
AvaI	CYCGRG	1 cut(s)	302
AvaII	GGWCC	2 cut(s)	785, 1847
BaeGI	GKGCMC	2 cut(s)	1453, 1631
BanII	GRGCYC	2 cut(s)	1262, 1631
BauI	CACGAG	1 cut(s)	1302
BbsI	GAAGAC	2 cut(s)	1718, 1759
Bbv12I	GWGCWC	2 cut(s)	1262, 1453
BbvI	GCAGC	5 cut(s)	487, 762, 1670, 2068, 2090
BccI	CCATC	6 cut(s)	427, 458, 501, 1075, 1079, 1822
BceAI	ACGGC	3 cut(s)	154, 176, 1014
BciT130I	CCWGG	2 cut(s)	425, 1167
BcnI	CCSGG	1 cut(s)	792
BcoDI	GTCTC	3 cut(s)	572, 1156, 2126
BcuI	ACTAGT	1 cut(s)	1940
BfaI	CTAG	5 cut(s)	51, 1622, 1632, 1941, 2039
BfmI	CTRYAG	3 cut(s)	501, 1220, 1315
BfoI	RGCGCY	1 cut(s)	1900
BfrI	CTTAAG	2 cut(s)	1394, 1892
BfuAI	ACCTGC	1 cut(s)	1497
BglI	GCCNNNNNGGC	1 cut(s)	1635
BisI	GCNGC	8 cut(s)	208, 217, 501, 776, 1659, 1681, 2079, 2082
BlsI	GCNGC	8 cut(s)	209, 218, 502, 777, 1660, 1682, 2080, 2083
Bme1390I	CCNGG	3 cut(s)	425, 792, 1167
Bme18I	GGWCC	2 cut(s)	785, 1847
BmeT110I	CYCGRG	1 cut(s)	302
BmgBI	CACGTC	1 cut(s)	1279
BmgT120I	GGNCC	6 cut(s)	785, 866, 1627, 1628, 1847, 1885
BmiI	GGNNCC	5 cut(s)	1024, 1095, 1480, 1629, 1886
BmrFI	CCNGG	3 cut(s)	425, 792, 1167
BpiI	GAAGAC	2 cut(s)	1718, 1759
Bpu10I	CCTNAGC	1 cut(s)	1654
Bpu14I	TTCGAA	1 cut(s)	700
BpuEI	CTTGAG	1 cut(s)	314
BpuMI	CCSGG	1 cut(s)	792
BsaBI	GATNNNNATC	2 cut(s)	531, 1443
BsaHI	GRCGYC	1 cut(s)	1171
BsaI	GGTCTC	1 cut(s)	1156
BsaJI	CCNNGG	2 cut(s)	303, 1482
BsaWI	WCCGGW	1 cut(s)	72
Bsc4I	CCNNNNNNNGG	5 cut(s)	203, 797, 1475, 1624, 1910
Bse118I	RCCGGY	1 cut(s)	131
Bse1I	ACTGG	3 cut(s)	802, 1403, 1645
Bse3DI	GCAATG	1 cut(s)	222
Bse8I	GATNNNNATC	2 cut(s)	531, 1443
BseAI	TCCGGA	1 cut(s)	72
BseBI	CCWGG	2 cut(s)	425, 1167
BseDI	CCNNGG	2 cut(s)	303, 1482
BseGI	GGATG	8 cut(s)	552, 964, 1090, 1153, 1441, 1671, 1816, 2029
BseJI	GATNNNNATC	2 cut(s)	531, 1443
BseLI	CCNNNNNNNGG	5 cut(s)	203, 797, 1475, 1624, 1910
BseMI	GCAATG	1 cut(s)	222
BseMII	CTCAG	2 cut(s)	1370, 1701
BseNI	ACTGG	3 cut(s)	802, 1403, 1645
BseRI	GAGGAG	3 cut(s)	320, 1427, 1505
BseSI	GKGCMC	2 cut(s)	1453, 1631
BseX3I	CGGCCG	1 cut(s)	205
BseXI	GCAGC	5 cut(s)	487, 762, 1670, 2068, 2090
BseYI	CCCAGC	4 cut(s)	97, 240, 254, 349
BsgI	GTGCAG	2 cut(s)	1326, 1344
Bsh1285I	CGRYCG	1 cut(s)	208
BshFI	GGCC	7 cut(s)	207, 219, 867, 1197, 1629, 1887, 2142
BsiEI	CGRYCG	1 cut(s)	208
BsiHKAI	GWGCWC	2 cut(s)	1262, 1453
BsiHKCI	CYCGRG	1 cut(s)	302
BsiSI	CCGG	4 cut(s)	73, 132, 204, 792
BslFI	GGGAC	5 cut(s)	73, 80, 179, 525, 574
BslI	CCNNNNNNNGG	5 cut(s)	203, 797, 1475, 1624, 1910
BsmAI	GTCTC	3 cut(s)	572, 1156, 2126
BsmFI	GGGAC	5 cut(s)	73, 80, 179, 525, 574
BsmI	GAATGC	2 cut(s)	238, 1044
BsnI	GGCC	7 cut(s)	207, 219, 867, 1197, 1629, 1887, 2142
Bso31I	GGTCTC	1 cut(s)	1156
BsoBI	CYCGRG	1 cut(s)	302
Bsp119I	TTCGAA	1 cut(s)	700
Bsp120I	GGGCCC	1 cut(s)	1627
Bsp1286I	GDGCHC	3 cut(s)	1262, 1453, 1631
Bsp13I	TCCGGA	1 cut(s)	72
Bsp143I	GATC	9 cut(s)	114, 175, 532, 847, 855, 940, 1016, 1390, 1534
BspACI	CCGC	7 cut(s)	129, 141, 208, 216, 299, 1320, 1681
BspANI	GGCC	7 cut(s)	207, 219, 867, 1197, 1629, 1887, 2142
BspCNI	CTCAG	2 cut(s)	1371, 1702
BspEI	TCCGGA	1 cut(s)	72
BspHI	TCATGA	2 cut(s)	1048, 1729
BspLI	GGNNCC	5 cut(s)	1024, 1095, 1480, 1629, 1886
BspMAI	CTGCAG	1 cut(s)	505
BspMI	ACCTGC	1 cut(s)	1497
BspPI	GGATC	1 cut(s)	842
BspQI	GCTCTTC	1 cut(s)	697
BspT104I	TTCGAA	1 cut(s)	700
BspTI	CTTAAG	2 cut(s)	1394, 1892
BspTNI	GGTCTC	1 cut(s)	1156
BsrBI	CCGCTC	1 cut(s)	216
BsrDI	GCAATG	1 cut(s)	222
BsrFI	RCCGGY	1 cut(s)	131
BsrI	ACTGG	3 cut(s)	802, 1403, 1645
BssAI	RCCGGY	1 cut(s)	131
BssECI	CCNNGG	2 cut(s)	303, 1482
BssMI	GATC	9 cut(s)	114, 175, 532, 847, 855, 940, 1016, 1390, 1534
BssNI	GRCGYC	1 cut(s)	1171
BssSI	CACGAG	1 cut(s)	1302
BssT1I	CCWWGG	1 cut(s)	1482
Bst2BI	CACGAG	1 cut(s)	1302
Bst2UI	CCWGG	2 cut(s)	425, 1167
Bst4CI	ACNGT	2 cut(s)	490, 884
Bst6I	CTCTTC	1 cut(s)	697
BstACI	GRCGYC	1 cut(s)	1171
BstAFI	CTTAAG	2 cut(s)	1394, 1892
BstBI	TTCGAA	1 cut(s)	700
BstC8I	GCNNGC	8 cut(s)	129, 133, 167, 252, 773, 1296, 1548, 2140
BstDEI	CTNAG	4 cut(s)	404, 1379, 1654, 1710
BstEII	GGTNACC	1 cut(s)	269
BstENI	CCTNNNNNAGG	1 cut(s)	1622
BstF5I	GGATG	8 cut(s)	552, 964, 1090, 1153, 1441, 1671, 1816, 2029
BstH2I	RGCGCY	1 cut(s)	1900
BstHHI	GCGC	1 cut(s)	1899
BstKTI	GATC	9 cut(s)	117, 178, 535, 850, 858, 943, 1019, 1393, 1537
BstMAI	GTCTC	3 cut(s)	572, 1156, 2126
BstMBI	GATC	9 cut(s)	114, 175, 532, 847, 855, 940, 1016, 1390, 1534
BstMCI	CGRYCG	1 cut(s)	208
BstMWI	GCNNNNNNNGC	8 cut(s)	213, 216, 233, 1304, 1635, 1658, 1677, 2087
BstNI	CCWGG	2 cut(s)	425, 1167
BstNSI	RCATGY	3 cut(s)	764, 775, 977
BstPI	GGTNACC	1 cut(s)	269
BstSCI	CCNGG	3 cut(s)	423, 790, 1165
BstSFI	CTRYAG	3 cut(s)	501, 1220, 1315
BstSLI	GKGCMC	2 cut(s)	1453, 1631
BstV1I	GCAGC	5 cut(s)	487, 762, 1670, 2068, 2090
BstV2I	GAAGAC	2 cut(s)	1718, 1759
BstX2I	RGATCY	1 cut(s)	847
BstYI	RGATCY	1 cut(s)	847
BstZI	CGGCCG	1 cut(s)	205
BsuRI	GGCC	7 cut(s)	207, 219, 867, 1197, 1629, 1887, 2142
BtrI	CACGTC	1 cut(s)	1279
BtsCI	GGATG	8 cut(s)	552, 964, 1090, 1153, 1441, 1671, 1816, 2029
BtsI	GCAGTG	1 cut(s)	323
BtsIMutI	CAGTG	4 cut(s)	323, 1410, 1638, 2194
BveI	ACCTGC	1 cut(s)	1497
Cac8I	GCNNGC	8 cut(s)	129, 133, 167, 252, 773, 1296, 1548, 2140
CaiI	CAGNNNCTG	1 cut(s)	2084
CciI	TCATGA	2 cut(s)	1048, 1729
CfoI	GCGC	1 cut(s)	1899
Cfr10I	RCCGGY	1 cut(s)	131
Cfr13I	GGNCC	6 cut(s)	785, 866, 1627, 1628, 1847, 1885
CsiI	ACCWGGT	1 cut(s)	423
Csp6I	GTAC	3 cut(s)	421, 722, 795
CviQI	GTAC	3 cut(s)	421, 722, 795
DdeI	CTNAG	4 cut(s)	404, 1379, 1654, 1710
DpnI	GATC	9 cut(s)	116, 177, 534, 849, 857, 942, 1018, 1392, 1536
DpnII	GATC	9 cut(s)	114, 175, 532, 847, 855, 940, 1016, 1390, 1534
DrdI	GACNNNNNNGTC	2 cut(s)	1170, 1380
DseDI	GACNNNNNNGTC	2 cut(s)	1170, 1380
EaeI	YGGCCR	2 cut(s)	205, 217
EagI	CGGCCG	1 cut(s)	205
Eam1104I	CTCTTC	1 cut(s)	697
EarI	CTCTTC	1 cut(s)	697
EciI	GGCGGA	2 cut(s)	130, 288
Ecl136II	GAGCTC	1 cut(s)	1260
EclXI	CGGCCG	1 cut(s)	205
Eco130I	CCWWGG	1 cut(s)	1482
Eco147I	AGGCCT	1 cut(s)	1197
Eco24I	GRGCYC	2 cut(s)	1262, 1631
Eco31I	GGTCTC	1 cut(s)	1156
Eco47I	GGWCC	2 cut(s)	785, 1847
Eco47III	AGCGCT	1 cut(s)	1898
Eco52I	CGGCCG	1 cut(s)	205
Eco53kI	GAGCTC	1 cut(s)	1260
Eco57I	CTGAAG	1 cut(s)	891
Eco88I	CYCGRG	1 cut(s)	302
Eco91I	GGTNACC	1 cut(s)	269
EcoICRI	GAGCTC	1 cut(s)	1260
EcoNI	CCTNNNNNAGG	1 cut(s)	1622
EcoO109I	RGGNCCY	3 cut(s)	1627, 1628, 1885
EcoO65I	GGTNACC	1 cut(s)	269
EcoRI	GAATTC	1 cut(s)	1952
EcoRII	CCWGG	2 cut(s)	423, 1165
EcoT14I	CCWWGG	1 cut(s)	1482
EcoT22I	ATGCAT	1 cut(s)	111
EcoT38I	GRGCYC	2 cut(s)	1262, 1631
ErhI	CCWWGG	1 cut(s)	1482
FaqI	GGGAC	5 cut(s)	73, 80, 179, 525, 574
FauI	CCCGC	1 cut(s)	136
FauNDI	CATATG	1 cut(s)	111
Fnu4HI	GCNGC	8 cut(s)	208, 217, 501, 776, 1659, 1681, 2079, 2082
FokI	GGATG	8 cut(s)	559, 971, 1097, 1160, 1448, 1658, 1823, 2036
FriOI	GRGCYC	2 cut(s)	1262, 1631
Fsp4HI	GCNGC	8 cut(s)	208, 217, 501, 776, 1659, 1681, 2079, 2082
FspBI	CTAG	5 cut(s)	51, 1622, 1632, 1941, 2039
GlaI	GCGC	1 cut(s)	1898
GluI	GCNGC	8 cut(s)	208, 217, 501, 776, 1659, 1681, 2079, 2082
GsaI	CCCAGC	4 cut(s)	101, 244, 258, 353
HaeII	RGCGCY	1 cut(s)	1900
HaeIII	GGCC	7 cut(s)	207, 219, 867, 1197, 1629, 1887, 2142
HapII	CCGG	4 cut(s)	73, 132, 204, 792
HhaI	GCGC	1 cut(s)	1899
Hin1I	GRCGYC	1 cut(s)	1171
Hin6I	GCGC	1 cut(s)	1897
HinP1I	GCGC	1 cut(s)	1897
HindIII	AAGCTT	2 cut(s)	1776, 1919
HinfI	GANTC	6 cut(s)	67, 137, 1225, 1381, 1712, 1961
HpaII	CCGG	4 cut(s)	73, 132, 204, 792
HphI	GGTGA	7 cut(s)	139, 281, 751, 905, 1544, 1745, 1939
Hpy166II	GTNNAC	8 cut(s)	722, 1040, 1063, 1282, 1408, 1451, 1753, 2161
Hpy188I	TCNGA	5 cut(s)	175, 231, 463, 1113, 1191
Hpy8I	GTNNAC	8 cut(s)	722, 1040, 1063, 1282, 1408, 1451, 1753, 2161
Hpy99I	CGWCG	1 cut(s)	398
HpyCH4III	ACNGT	2 cut(s)	490, 884
HpyCH4IV	ACGT	8 cut(s)	480, 619, 888, 1171, 1278, 1764, 1815, 2123
HpyF10VI	GCNNNNNNNGC	8 cut(s)	213, 216, 233, 1304, 1635, 1658, 1677, 2087
HpyF3I	CTNAG	4 cut(s)	404, 1379, 1654, 1710
HpySE526I	ACGT	8 cut(s)	480, 619, 888, 1171, 1278, 1764, 1815, 2123
Hsp92I	GRCGYC	1 cut(s)	1171
HspAI	GCGC	1 cut(s)	1897
Kpn2I	TCCGGA	1 cut(s)	72
KroI	GCCGGC	1 cut(s)	131
KroNI	GCCGGC	1 cut(s)	133
Kzo9I	GATC	9 cut(s)	114, 175, 532, 847, 855, 940, 1016, 1390, 1534
LguI	GCTCTTC	1 cut(s)	697
LmnI	GCTCC	6 cut(s)	916, 1093, 1276, 1478, 1492, 1576
Lsp1109I	GCAGC	5 cut(s)	487, 762, 1670, 2068, 2090
MabI	ACCWGGT	1 cut(s)	423
MaeI	CTAG	5 cut(s)	51, 1622, 1632, 1941, 2039
MaeII	ACGT	8 cut(s)	480, 619, 888, 1171, 1278, 1764, 1815, 2123
MaeIII	GTNAC	7 cut(s)	118, 269, 399, 884, 1426, 1785, 2189
MalI	GATC	9 cut(s)	116, 177, 534, 849, 857, 942, 1018, 1392, 1536
MbiI	CCGCTC	1 cut(s)	216
MboI	GATC	9 cut(s)	114, 175, 532, 847, 855, 940, 1016, 1390, 1534
MboII	GAAGA	9 cut(s)	170, 565, 619, 641, 714, 916, 1220, 1718, 1759
MfeI	CAATTG	1 cut(s)	1790
MflI	RGATCY	1 cut(s)	847
MhlI	GDGCHC	3 cut(s)	1262, 1453, 1631
MlyI	GAGTC	4 cut(s)	131, 1390, 1721, 1955
MmeI	TCCRAC	1 cut(s)	858
Mph1103I	ATGCAT	1 cut(s)	111
MreI	CGCCGGCG	1 cut(s)	131
MroI	TCCGGA	1 cut(s)	72
MroNI	GCCGGC	1 cut(s)	131
MslI	CAYNNNNRTG	3 cut(s)	110, 957, 1551
MspA1I	CMGCKG	1 cut(s)	2081
MspCI	CTTAAG	2 cut(s)	1394, 1892
MspI	CCGG	4 cut(s)	73, 132, 204, 792
MspR9I	CCNGG	3 cut(s)	425, 792, 1167
MunI	CAATTG	1 cut(s)	1790
Mva1269I	GAATGC	2 cut(s)	238, 1044
MvaI	CCWGG	2 cut(s)	425, 1167
MwoI	GCNNNNNNNGC	8 cut(s)	213, 216, 233, 1304, 1635, 1658, 1677, 2087
NaeI	GCCGGC	1 cut(s)	133
NciI	CCSGG	1 cut(s)	792
NdeI	CATATG	1 cut(s)	111
NdeII	GATC	9 cut(s)	114, 175, 532, 847, 855, 940, 1016, 1390, 1534
NgoMIV	GCCGGC	1 cut(s)	131
NlaIV	GGNNCC	5 cut(s)	1024, 1095, 1480, 1629, 1886
NmeAIII	GCCGAG	1 cut(s)	796
NmuCI	GTSAC	3 cut(s)	269, 1785, 2189
NsiI	ATGCAT	1 cut(s)	111
NspI	RCATGY	3 cut(s)	764, 775, 977
NspV	TTCGAA	1 cut(s)	700
PaeI	GCATGC	1 cut(s)	775
PagI	TCATGA	2 cut(s)	1048, 1729
PceI	AGGCCT	1 cut(s)	1197
PciSI	GCTCTTC	1 cut(s)	697
PctI	GAATGC	2 cut(s)	238, 1044
PdiI	GCCGGC	1 cut(s)	133
PfeI	GAWTC	2 cut(s)	67, 1225
PkrI	GCNGC	8 cut(s)	209, 218, 502, 777, 1660, 1682, 2080, 2083
PleI	GAGTC	4 cut(s)	131, 1389, 1720, 1955
PpsI	GAGTC	4 cut(s)	131, 1389, 1720, 1955
Psp124BI	GAGCTC	1 cut(s)	1262
Psp6I	CCWGG	2 cut(s)	423, 1165
PspEI	GGTNACC	1 cut(s)	269
PspFI	CCCAGC	4 cut(s)	97, 240, 254, 349
PspGI	CCWGG	2 cut(s)	423, 1165
PspN4I	GGNNCC	5 cut(s)	1024, 1095, 1480, 1629, 1886
PspOMI	GGGCCC	1 cut(s)	1627
PspPI	GGNCC	6 cut(s)	785, 866, 1627, 1628, 1847, 1885
PstI	CTGCAG	1 cut(s)	505
PstNI	CAGNNNCTG	1 cut(s)	2084
PsuI	RGATCY	1 cut(s)	847
PvuII	CAGCTG	1 cut(s)	2081
RsaI	GTAC	3 cut(s)	422, 723, 796
RsaNI	GTAC	3 cut(s)	421, 722, 795
RseI	CAYNNNNRTG	3 cut(s)	110, 957, 1551
SacI	GAGCTC	1 cut(s)	1262
SapI	GCTCTTC	1 cut(s)	697
SatI	GCNGC	8 cut(s)	208, 217, 501, 776, 1659, 1681, 2079, 2082
Sau3AI	GATC	9 cut(s)	114, 175, 532, 847, 855, 940, 1016, 1390, 1534
Sau96I	GGNCC	6 cut(s)	785, 866, 1627, 1628, 1847, 1885
SchI	GAGTC	4 cut(s)	131, 1390, 1721, 1955
ScrFI	CCNGG	3 cut(s)	425, 792, 1167
SduI	GDGCHC	3 cut(s)	1262, 1453, 1631
SexAI	ACCWGGT	1 cut(s)	423
SfcI	CTRYAG	3 cut(s)	501, 1220, 1315
SfuI	TTCGAA	1 cut(s)	700
SgrAI	CRCCGGYG	1 cut(s)	131
SinI	GGWCC	2 cut(s)	785, 1847
SmiMI	CAYNNNNRTG	3 cut(s)	110, 957, 1551
SmlI	CTYRAG	3 cut(s)	329, 1394, 1892
SmoI	CTYRAG	3 cut(s)	329, 1394, 1892
SpeI	ACTAGT	1 cut(s)	1940
SphI	GCATGC	1 cut(s)	775
SseBI	AGGCCT	1 cut(s)	1197
SsiI	CCGC	7 cut(s)	129, 141, 208, 216, 299, 1320, 1681
SspI	AATATT	4 cut(s)	984, 1057, 1108, 1420
SspMI	CTAG	5 cut(s)	51, 1622, 1632, 1941, 2039
SstI	GAGCTC	1 cut(s)	1262
StuI	AGGCCT	1 cut(s)	1197
StyD4I	CCNGG	3 cut(s)	423, 790, 1165
StyI	CCWWGG	1 cut(s)	1482
TaaI	ACNGT	2 cut(s)	490, 884
TaiI	ACGT	8 cut(s)	483, 622, 891, 1174, 1281, 1767, 1818, 2126
TaqI	TCGA	9 cut(s)	370, 378, 393, 576, 700, 1288, 1537, 1770, 2209
TatI	WGTACW	1 cut(s)	721
TauI	GCSGC	3 cut(s)	210, 219, 1683
TfiI	GAWTC	2 cut(s)	67, 1225
TscAI	CASTG	4 cut(s)	330, 1410, 1645, 2194
TseFI	GTSAC	3 cut(s)	269, 1785, 2189
TseI	GCWGC	5 cut(s)	500, 775, 1658, 2078, 2081
Tsp45I	GTSAC	3 cut(s)	269, 1785, 2189
TspRI	CASTG	4 cut(s)	330, 1410, 1645, 2194
Vha464I	CTTAAG	2 cut(s)	1394, 1892
VneI	GTGCAC	1 cut(s)	1449
VpaK11BI	GGWCC	2 cut(s)	785, 1847
XagI	CCTNNNNNAGG	1 cut(s)	1622
XapI	RAATTY	5 cut(s)	831, 1185, 1233, 1946, 1952
XbaI	TCTAGA	1 cut(s)	1621
XceI	RCATGY	3 cut(s)	764, 775, 977
XspI	CTAG	5 cut(s)	51, 1622, 1632, 1941, 2039
ZraI	GACGTC	1 cut(s)	1172
Zsp2I	ATGCAT	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.