RchiOBHm_Chr3g0479931

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0016367
Physical Location & Seq
Forward (+)
25709694 .. 25710049
356 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 306 bp
ATGAAGATCATCAGTTTCAGAACTACTTTGAGTGCTCTCTTTGCTCTGATATTACTAATTGAAATCCTTCTGTGCTCTTCTTTTTGTCTCTGTCACGAAGAACAGATCATCCATGTCTTTCCCAGCAGAGAAAGAAGCTTCTCAAGAAGGCTGCTGTTAAATGTTCCACAGGCCGCTTCTGTTTCTGTAAGAAGTACTAGTACTACACTAGGTACTAGAGCCATGGAAGATCAGCCCAAGAAAGCTGTGGAGTCTAGTTTGAGGAAGGCACCACCAAGTGTTGCAAATCCTACTCAGAACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

11.23

Weight (kDa)

9.92

Isoelectric Point (pI)

74.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 268
AciI CCGC 1 cut(s) 174
AdeI CACNNNGTG 1 cut(s) 278
AfaI GTAC 3 cut(s) 196, 202, 214
AgsI TTSAA 1 cut(s) 62
AhlI ACTAGT 1 cut(s) 197
AloI GAACNNNNNNTCC 2 cut(s) 93, 125
AluBI AGCT 2 cut(s) 138, 245
AluI AGCT 2 cut(s) 138, 245
Alw21I GWGCWC 2 cut(s) 37, 77
Alw26I GTCTC 1 cut(s) 92
AoxI GGCC 1 cut(s) 171
ApeKI GCWGC 1 cut(s) 151
Asp700I GAANNNNTTC 1 cut(s) 66
BanI GGYRCC 1 cut(s) 268
BarI GAAGNNNNNNTAC 2 cut(s) 184, 216
Bbv12I GWGCWC 2 cut(s) 37, 77
BbvI GCAGC 1 cut(s) 138
BcoDI GTCTC 1 cut(s) 92
BcuI ACTAGT 1 cut(s) 197
BfaI CTAG 4 cut(s) 198, 209, 216, 255
BisI GCNGC 2 cut(s) 152, 174
BlsI GCNGC 2 cut(s) 153, 175
BmcAI AGTACT 2 cut(s) 196, 202
BmiI GGNNCC 1 cut(s) 270
BpuEI CTTGAG 1 cut(s) 127
BsaJI CCNNGG 1 cut(s) 222
BseDI CCNNGG 1 cut(s) 222
BseGI GGATG 1 cut(s) 108
BseXI GCAGC 1 cut(s) 138
BseYI CCCAGC 1 cut(s) 122
BshFI GGCC 1 cut(s) 173
BshNI GGYRCC 1 cut(s) 268
BsiHKAI GWGCWC 2 cut(s) 37, 77
BsmAI GTCTC 1 cut(s) 92
BsnI GGCC 1 cut(s) 173
Bsp1286I GDGCHC 2 cut(s) 37, 77
Bsp143I GATC 3 cut(s) 6, 105, 229
Bsp19I CCATGG 1 cut(s) 222
BspACI CCGC 1 cut(s) 174
BspANI GGCC 1 cut(s) 173
BspLI GGNNCC 1 cut(s) 270
BspQI GCTCTTC 1 cut(s) 82
BspT107I GGYRCC 1 cut(s) 268
BssECI CCNNGG 1 cut(s) 222
BssMI GATC 3 cut(s) 6, 105, 229
BssT1I CCWWGG 1 cut(s) 222
Bst6I CTCTTC 1 cut(s) 82
BstDEI CTNAG 1 cut(s) 294
BstDSI CCRYGG 1 cut(s) 222
BstF5I GGATG 1 cut(s) 108
BstKTI GATC 3 cut(s) 9, 108, 232
BstMAI GTCTC 1 cut(s) 92
BstMBI GATC 3 cut(s) 6, 105, 229
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstV1I GCAGC 1 cut(s) 138
BsuRI GGCC 1 cut(s) 173
BtgI CCRYGG 1 cut(s) 222
BtsCI GGATG 1 cut(s) 108
Csp6I GTAC 3 cut(s) 195, 201, 213
CviAII CATG 2 cut(s) 113, 223
CviJI RGCY 6 cut(s) 138, 151, 173, 221, 235, 245
CviKI_1 RGCY 6 cut(s) 138, 151, 173, 221, 235, 245
CviQI GTAC 3 cut(s) 195, 201, 213
DdeI CTNAG 1 cut(s) 294
DpnI GATC 3 cut(s) 8, 107, 231
DpnII GATC 3 cut(s) 6, 105, 229
DraIII CACNNNGTG 1 cut(s) 278
Eam1104I CTCTTC 1 cut(s) 82
EarI CTCTTC 1 cut(s) 82
Eco130I CCWWGG 1 cut(s) 222
EcoT14I CCWWGG 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 222
FaeI CATG 2 cut(s) 116, 226
FaiI YATR 2 cut(s) 114, 224
FatI CATG 2 cut(s) 112, 222
Fnu4HI GCNGC 2 cut(s) 152, 174
FokI GGATG 1 cut(s) 95
Fsp4HI GCNGC 2 cut(s) 152, 174
FspBI CTAG 4 cut(s) 198, 209, 216, 255
GluI GCNGC 2 cut(s) 152, 174
GsaI CCCAGC 1 cut(s) 126
HaeIII GGCC 1 cut(s) 173
Hin1II CATG 2 cut(s) 116, 226
HindIII AAGCTT 1 cut(s) 136
HinfI GANTC 1 cut(s) 251
Hpy188I TCNGA 3 cut(s) 20, 48, 297
Hpy188III TCNNGA 2 cut(s) 95, 144
HpyAV CCTTC 3 cut(s) 77, 141, 259
HpyCH4V TGCA 1 cut(s) 284
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
HpyF3I CTNAG 1 cut(s) 294
Hsp92II CATG 2 cut(s) 116, 226
Kzo9I GATC 3 cut(s) 6, 105, 229
LguI GCTCTTC 1 cut(s) 82
LpnPI CCDG 2 cut(s) 136, 155
Lsp1109I GCAGC 1 cut(s) 138
MaeI CTAG 4 cut(s) 198, 209, 216, 255
MaeIII GTNAC 1 cut(s) 92
MalI GATC 3 cut(s) 8, 107, 231
MboI GATC 3 cut(s) 6, 105, 229
MboII GAAGA 4 cut(s) 16, 69, 110, 239
MhlI GDGCHC 2 cut(s) 37, 77
MluCI AATT 1 cut(s) 57
MlyI GAGTC 1 cut(s) 260
MnlI CCTC 1 cut(s) 255
MroXI GAANNNNTTC 1 cut(s) 66
MseI TTAA 1 cut(s) 158
MwoI GCNNNNNNNGC 1 cut(s) 41
NcoI CCATGG 1 cut(s) 222
NdeII GATC 3 cut(s) 6, 105, 229
NlaIII CATG 2 cut(s) 116, 226
NlaIV GGNNCC 1 cut(s) 270
NmuCI GTSAC 1 cut(s) 92
PciSI GCTCTTC 1 cut(s) 82
PdmI GAANNNNTTC 1 cut(s) 66
PkrI GCNGC 2 cut(s) 153, 175
PleI GAGTC 1 cut(s) 259
PpsI GAGTC 1 cut(s) 259
PspFI CCCAGC 1 cut(s) 122
PspN4I GGNNCC 1 cut(s) 270
RsaI GTAC 3 cut(s) 196, 202, 214
RsaNI GTAC 3 cut(s) 195, 201, 213
SapI GCTCTTC 1 cut(s) 82
SaqAI TTAA 1 cut(s) 158
SatI GCNGC 2 cut(s) 152, 174
Sau3AI GATC 3 cut(s) 6, 105, 229
ScaI AGTACT 2 cut(s) 196, 202
SchI GAGTC 1 cut(s) 260
SduI GDGCHC 2 cut(s) 37, 77
SetI ASST 3 cut(s) 140, 214, 247
SmlI CTYRAG 1 cut(s) 142
SmoI CTYRAG 1 cut(s) 142
SpeI ACTAGT 1 cut(s) 197
Sse9I AATT 1 cut(s) 57
SsiI CCGC 1 cut(s) 174
SspMI CTAG 4 cut(s) 198, 209, 216, 255
StyI CCWWGG 1 cut(s) 222
TasI AATT 1 cut(s) 57
TatI WGTACW 2 cut(s) 194, 200
TauI GCSGC 1 cut(s) 176
Tru1I TTAA 1 cut(s) 158
Tru9I TTAA 1 cut(s) 158
TseFI GTSAC 1 cut(s) 92
TseI GCWGC 1 cut(s) 151
Tsp45I GTSAC 1 cut(s) 92
TspDTI ATGAA 1 cut(s) 17
XcmI CCANNNNNNNNNTGG 1 cut(s) 244
XmnI GAANNNNTTC 1 cut(s) 66
XspI CTAG 4 cut(s) 198, 209, 216, 255
ZrmI AGTACT 2 cut(s) 196, 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.