Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0020970

Physical Location & Seq

Genomic Coordinates Reverse (-)

38558549 .. 38558821

Gene Structure 273 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGATGCTTTTTTTTTTTTGGCTGATAATGATAAAGATATCAAATCGTATAATTCTTTTGTTGGTAGATTGGAGGATTAGAAACATGACTATTGCTTTCCAGTTGGCTGTTTTTGCATTAATTGCTACTTCATTAATCTTACTAATTAGTGTACCTGTTGTATTTGCTTCTCCTGAGGGTTGGTCGGGTAACAAAAATGTTGTATTTTCCGGTACATCATTGTGGATTGGATTAGTCTTTCTGGTGGGTATCCTTAATTCTCTCATCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

Ycf9

Protein Analysis

90

Amino Acids

10.12

Weight (kDa)

10.9

Isoelectric Point (pI)

28.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ycf9	PF01737	33 - 89	1.5e-23	YCF9

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00300
malus_domestica	MD11G1068400.v1.1
prunus_persica	Prupe.2G104500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0491831 RchiOBHm_CPg0502301

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	153, 214
AseI	ATTAAT	2 cut(s)	119, 134
AxyI	CCTNAGG	1 cut(s)	174
BciVI	GTATCC	1 cut(s)	260
BfuI	GTATCC	1 cut(s)	260
BsaWI	WCCGGW	1 cut(s)	209
Bse1I	ACTGG	1 cut(s)	100
Bse21I	CCTNAGG	1 cut(s)	174
BseMII	CTCAG	1 cut(s)	165
BseNI	ACTGG	1 cut(s)	100
BsiSI	CCGG	1 cut(s)	210
BspCNI	CTCAG	1 cut(s)	166
BsrI	ACTGG	1 cut(s)	100
BstAPI	GCANNNNNTGC	1 cut(s)	122
BstDEI	CTNAG	1 cut(s)	174
BstMWI	GCNNNNNNNGC	2 cut(s)	113, 122
Bsu36I	CCTNAGG	1 cut(s)	174
BsuI	GTATCC	1 cut(s)	260
Csp6I	GTAC	2 cut(s)	152, 213
CviAII	CATG	1 cut(s)	85
CviJI	RGCY	2 cut(s)	22, 107
CviKI_1	RGCY	2 cut(s)	22, 107
CviQI	GTAC	2 cut(s)	152, 213
DdeI	CTNAG	1 cut(s)	174
Eco32I	GATATC	1 cut(s)	39
Eco81I	CCTNAGG	1 cut(s)	174
EcoRV	GATATC	1 cut(s)	39
FaeI	CATG	1 cut(s)	88
FaiI	YATR	2 cut(s)	50, 86
FatI	CATG	1 cut(s)	84
HapII	CCGG	1 cut(s)	210
Hin1II	CATG	1 cut(s)	88
HpaII	CCGG	1 cut(s)	210
Hpy166II	GTNNAC	1 cut(s)	152
Hpy188III	TCNNGA	2 cut(s)	173, 270
Hpy8I	GTNNAC	1 cut(s)	152
HpyCH4V	TGCA	1 cut(s)	116
HpyF10VI	GCNNNNNNNGC	2 cut(s)	113, 122
HpyF3I	CTNAG	1 cut(s)	174
Hsp92II	CATG	1 cut(s)	88
LpnPI	CCDG	5 cut(s)	113, 168, 186, 223, 227
MaeIII	GTNAC	1 cut(s)	188
MluCI	AATT	4 cut(s)	51, 120, 144, 256
MnlI	CCTC	2 cut(s)	66, 169
MseI	TTAA	3 cut(s)	119, 134, 255
MslI	CAYNNNNRTG	1 cut(s)	220
MspI	CCGG	1 cut(s)	210
MwoI	GCNNNNNNNGC	2 cut(s)	113, 122
NlaIII	CATG	1 cut(s)	88
PshBI	ATTAAT	2 cut(s)	119, 134
RsaI	GTAC	2 cut(s)	153, 214
RsaNI	GTAC	2 cut(s)	152, 213
RseI	CAYNNNNRTG	1 cut(s)	220
SaqAI	TTAA	3 cut(s)	119, 134, 255
SetI	ASST	1 cut(s)	157
SgeI	CNNG	7 cut(s)	97, 112, 167, 185, 198, 222, 254
SmiMI	CAYNNNNRTG	1 cut(s)	220
Sse9I	AATT	4 cut(s)	51, 120, 144, 256
TasI	AATT	4 cut(s)	51, 120, 144, 256
Tru1I	TTAA	3 cut(s)	119, 134, 255
Tru9I	TTAA	3 cut(s)	119, 134, 255
TspDTI	ATGAA	1 cut(s)	120
VspI	ATTAAT	2 cut(s)	119, 134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.