RchiOBHm_Chr3g0495811

Belongs to the short-chain dehydrogenases reductases (SDR) family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
45891410 .. 45892241
832 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 315 bp
ATGTTTTTTACGGTGCTCATTTTGCTTCAGTTATGGCACACAAATGTGCGCTATAAAAGACACGGGATCTTTTACGGCACATTTTTGTGTGCCGTAAAATTACATTTACGGCGCACTCTGTGGGCCGTAAAAGTCCCTTTTTGGTGTAGTGGTGTAGCAACCTCATGCTTTGTGGCACTCCATCCACAAGTTAAGGCAGTAAGCAGCGAATATTTTGCAGACTGTAACATTGTCAAACCAAGCAATCAGGCCAAAGATGCAGATTTGGCTTCCAAACTTTGGGATTTTAGCTTGAGCATGACTAATCTCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

104

Amino Acids

11.94

Weight (kDa)

9.55

Isoelectric Point (pI)

39.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0018434)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 279
AclWI GGATC 1 cut(s) 74
AcuI CTGAAG 1 cut(s) 11
AdeI CACNNNGTG 1 cut(s) 120
AfiI CCNNNNNNNGG 1 cut(s) 279
AleI CACNNNNGTG 1 cut(s) 44
AluBI AGCT 1 cut(s) 291
AluI AGCT 1 cut(s) 291
Alw21I GWGCWC 1 cut(s) 18
AlwI GGATC 1 cut(s) 74
AoxI GGCC 2 cut(s) 123, 249
ApeKI GCWGC 1 cut(s) 204
AspLEI GCGC 2 cut(s) 51, 114
AspS9I GGNCC 1 cut(s) 123
Bbv12I GWGCWC 1 cut(s) 18
BbvI GCAGC 1 cut(s) 216
BccI CCATC 1 cut(s) 189
BceAI ACGGC 4 cut(s) 77, 91, 110, 125
BcgI CGANNNNNNTGC 2 cut(s) 197, 231
BisI GCNGC 1 cut(s) 205
BlsI GCNGC 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 123
BmsI GCATC 1 cut(s) 247
BpuEI CTTGAG 2 cut(s) 293, 313
Bsc4I CCNNNNNNNGG 1 cut(s) 279
BseGI GGATG 1 cut(s) 181
BseLI CCNNNNNNNGG 1 cut(s) 279
BseXI GCAGC 1 cut(s) 216
BshFI GGCC 2 cut(s) 125, 251
BsiHKAI GWGCWC 1 cut(s) 18
BslFI GGGAC 1 cut(s) 119
BslI CCNNNNNNNGG 1 cut(s) 279
BsmFI GGGAC 1 cut(s) 119
BsnI GGCC 2 cut(s) 125, 251
Bsp1286I GDGCHC 1 cut(s) 18
Bsp143I GATC 1 cut(s) 66
BspANI GGCC 2 cut(s) 125, 251
BspPI GGATC 1 cut(s) 74
BssMI GATC 1 cut(s) 66
Bst4CI ACNGT 2 cut(s) 13, 224
BstF5I GGATG 1 cut(s) 181
BstHHI GCGC 2 cut(s) 51, 114
BstKTI GATC 1 cut(s) 69
BstMBI GATC 1 cut(s) 66
BstMWI GCNNNNNNNGC 3 cut(s) 22, 257, 266
BstV1I GCAGC 1 cut(s) 216
BstX2I RGATCY 1 cut(s) 66
BstYI RGATCY 1 cut(s) 66
BsuRI GGCC 2 cut(s) 125, 251
BtsCI GGATG 1 cut(s) 181
CfoI GCGC 2 cut(s) 51, 114
Cfr13I GGNCC 1 cut(s) 123
CviAII CATG 2 cut(s) 165, 298
CviJI RGCY 4 cut(s) 125, 251, 269, 291
CviKI_1 RGCY 4 cut(s) 125, 251, 269, 291
DpnI GATC 1 cut(s) 68
DpnII GATC 1 cut(s) 66
DraIII CACNNNGTG 1 cut(s) 120
Eco57I CTGAAG 1 cut(s) 11
FaeI CATG 2 cut(s) 168, 301
FaiI YATR 4 cut(s) 34, 54, 166, 299
FaqI GGGAC 1 cut(s) 119
FatI CATG 2 cut(s) 164, 297
Fnu4HI GCNGC 1 cut(s) 205
FokI GGATG 1 cut(s) 168
Fsp4HI GCNGC 1 cut(s) 205
GlaI GCGC 2 cut(s) 50, 113
GluI GCNGC 1 cut(s) 205
HaeIII GGCC 2 cut(s) 125, 251
HhaI GCGC 2 cut(s) 51, 114
Hin1II CATG 2 cut(s) 168, 301
Hin6I GCGC 2 cut(s) 49, 112
HinP1I GCGC 2 cut(s) 49, 112
HpyCH4III ACNGT 2 cut(s) 13, 224
HpyCH4V TGCA 2 cut(s) 218, 260
HpyF10VI GCNNNNNNNGC 3 cut(s) 22, 257, 266
Hsp92II CATG 2 cut(s) 168, 301
HspAI GCGC 2 cut(s) 49, 112
Kzo9I GATC 1 cut(s) 66
LpnPI CCDG 1 cut(s) 233
Lsp1109I GCAGC 1 cut(s) 216
LweI GCATC 1 cut(s) 247
MaeIII GTNAC 1 cut(s) 224
MalI GATC 1 cut(s) 68
MboI GATC 1 cut(s) 66
MflI RGATCY 1 cut(s) 66
MhlI GDGCHC 1 cut(s) 18
MluCI AATT 1 cut(s) 98
MnlI CCTC 1 cut(s) 172
MseI TTAA 1 cut(s) 192
MslI CAYNNNNRTG 3 cut(s) 42, 44, 85
MwoI GCNNNNNNNGC 3 cut(s) 22, 257, 266
NdeII GATC 1 cut(s) 66
NlaIII CATG 2 cut(s) 168, 301
OliI CACNNNNGTG 1 cut(s) 44
PflMI CCANNNNNTGG 1 cut(s) 279
PkrI GCNGC 1 cut(s) 206
PspPI GGNCC 1 cut(s) 123
PsuI RGATCY 1 cut(s) 66
RseI CAYNNNNRTG 3 cut(s) 42, 44, 85
SaqAI TTAA 1 cut(s) 192
SatI GCNGC 1 cut(s) 205
Sau3AI GATC 1 cut(s) 66
Sau96I GGNCC 1 cut(s) 123
SduI GDGCHC 1 cut(s) 18
SetI ASST 2 cut(s) 164, 293
SfaNI GCATC 1 cut(s) 247
SgeI CNNG 8 cut(s) 74, 76, 177, 200, 252, 260, 304, 310
SmiMI CAYNNNNRTG 3 cut(s) 42, 44, 85
SmlI CTYRAG 2 cut(s) 292, 308
SmoI CTYRAG 2 cut(s) 292, 308
Sse9I AATT 1 cut(s) 98
SspI AATATT 1 cut(s) 212
TaaI ACNGT 2 cut(s) 13, 224
TasI AATT 1 cut(s) 98
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TseI GCWGC 1 cut(s) 204
Van91I CCANNNNNTGG 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.