RchiOBHm_Chr2g0091341

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0018342
Physical Location & Seq
Forward (+)
4997723 .. 4999276
1554 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1554 bp
ATGAAGAAACAGGGAATAAACATAGAGCTGGATGAAGCAGAGGACTGGTGCTTCGTCTGCAAAGATGGTGGAGCCTTGAGGCTGTGTGACTACCAGGGCTGCACCAAAGTCTATCACCCCAAATGTGTGGGAAGGAAGAATACTTTTCTCAAAAGCGAGAGGCGATGGATTTGTGATCACCACTCTTGTTCAGTGTGTTGCTCCGGGATCAAAATCGGCTTCTCTTGCCTTCTTTGCACATTTTCGGTTTGTGAGAATTGCCGCAAGAGTAGCCATGACTCTGAGTTTGCGGTGGTGAGAGGGAAGGAGAAATTAGGCCTCTGTGAGGATTGTTTAGAGCTTGTTAGGCTTGCGGAGGAGAATGCGGAGTATGATGGAGATGGAGATAGGTTGGACTTTGAGGATCAGGAGACATTCGAAACCGGATTTATAGAGTGTTGGGAGATCCTCAAGGAAAAGGAGGGCTTGAGTTTGGATGATATATCTGAAGAAAGAAGAGGGATGATAGATGAAGAGGAAATGACATTGAAAGAACTTCTCCTGCGGAAACACAACAACCGAAAATCAGATCATGTGGCATCATTTGATTCTGAGGAAAAGCCTAAGAAAGTGGTTAGTCCTATTTCTCCTAGGAATACCGAAGAAAATGGGATGAGCGAGGATGAGGATGATGAAACTACATTGAAAAATTTTTCGTTGCACAAACAGAAGAAGCGAAAATTAGTGATCTCAGATTCTGAGACATCATCTGATTCTGAGGAAAAGGAGCCACATTTAGAGAATGGGATTAGTGAGGATGATGAAGATGAAATTACACTGATAGATCACGCCACGTGCAGATTACACAAGAAGCCAAAACTGGTGATCTCTTCTGATGTTACATCACTTAATTTTGACAAAAAGTTTGAGGAAAAGGAGGAAGTGATGGATCCTAATCCCACTAGGAACGCCGAAGAAAGTTGTTTTGCGTCTGTAGTTGCTAGTAATATGAAGCTTGTCTACTTACGAAGGAGCTTGGTGGAGGAGTTGATGTCAAAGCCGCCTGATAAATGGGAGAGAAAGGTAGTGGGAAGCTATGTAAGAGTGGAAAATGACCCCAAAGACTATTTCCGGGGAAATTCCTGTCACCAACTTACACAAGTGAAAGGCATAACTAGGAAGCACGACGGTGAAGAAATTCTCCTACAACTGCTCACAAGAGATGTTCCCATTTCCTTGCTATCGGATTGCGATTTTACCGAGGAAGAATGTGGGGATTTGCGAGACAGAGTGGAGAATTACCTGGTAAGGAGACCTACTGTTGTTGAGATTGAACATAAAGCAAGAGAGCTGCGCGAGGATCTAACAAAGGATTGGATTGAGAGAGAATTCATCCGGTTAATGAATTGCTTTCCTCGAGGGACAAATCAGAGTGGATGGTACAGCACGAAGTTATCCAAGTATTTGGAGCTTAAAGAGATGCTAAAGCAAATATCAGAACAGGAAAGACTCTTGCAAAAGGAGCCACAAGTCATTGCAGAGGTCTTGGACTTGAGCGACTTATGGCTTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plus-3 SWIB

Protein Analysis

517

Amino Acids

59.95

Weight (kDa)

4.97

Isoelectric Point (pI)

58.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Plus-3 PF03126 329 - 424 7.4e-11 Plus-3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018342)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g05690 FvH4_4g12500
rosa_chinensis RchiOBHm_Chr2g0091341
rosa_laevigata RLG00000016213
rosa_rugosa Rorug02G0016500
rosa_samantha Rh2AG061400 Rh2BG060800 Rh2CG062800 Rh2DG061400
rosa_wichuraiana Rw2G004830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 1395
AccI GTMKAC 1 cut(s) 999
AccII CGCG 1 cut(s) 1335
AciI CCGC 6 cut(s) 262, 290, 353, 365, 544, 1040
AclWI GGATC 6 cut(s) 215, 411, 439, 923, 936, 1347
AcsI RAATTY 4 cut(s) 688, 1117, 1176, 1367
AcuI CTGAAG 1 cut(s) 507
AcvI CACGTG 1 cut(s) 834
AfaI GTAC 1 cut(s) 1421
AfiI CCNNNNNNNGG 1 cut(s) 325
AgsI TTSAA 3 cut(s) 529, 685, 1313
AjnI CCWGG 2 cut(s) 93, 1281
AjuI GAANNNNNNNTTGG 2 cut(s) 1091, 1123
AleI CACNNNNGTG 1 cut(s) 1167
AluBI AGCT 7 cut(s) 28, 340, 994, 1014, 1074, 1330, 1450
AluI AGCT 7 cut(s) 28, 340, 994, 1014, 1074, 1330, 1450
Alw26I GTCTC 4 cut(s) 404, 734, 1257, 1285
AlwI GGATC 6 cut(s) 215, 411, 439, 923, 936, 1347
AlwNI CAGNNNCTG 1 cut(s) 737
Ama87I CYCGRG 1 cut(s) 1395
AoxI GGCC 1 cut(s) 316
ApeKI GCWGC 2 cut(s) 99, 1330
ApoI RAATTY 4 cut(s) 688, 1117, 1176, 1367
ArsI GACNNNNNNTTYG 6 cut(s) 35, 67, 269, 301, 887, 919
Asp700I GAANNNNTTC 1 cut(s) 1176
AspA2I CCTAGG 1 cut(s) 629
AspLEI GCGC 1 cut(s) 1335
AsuC2I CCSGG 2 cut(s) 205, 1112
AsuHPI GGTGA 6 cut(s) 107, 170, 307, 874, 1118, 1181
AsuII TTCGAA 1 cut(s) 417
AvaI CYCGRG 1 cut(s) 1395
AvrII CCTAGG 1 cut(s) 629
BamHI GGATCC 1 cut(s) 928
BarI GAAGNNNNNNTAC 4 cut(s) 124, 156, 983, 1015
BbrPI CACGTG 1 cut(s) 834
BbvI GCAGC 2 cut(s) 86, 1317
BccI CCATC 6 cut(s) 59, 159, 368, 374, 919, 1410
BciT130I CCWGG 2 cut(s) 95, 1283
BclI TGATCA 1 cut(s) 175
BcnI CCSGG 2 cut(s) 205, 1112
BcoDI GTCTC 4 cut(s) 404, 734, 1257, 1285
BfaI CTAG 4 cut(s) 630, 942, 981, 1155
BfmI CTRYAG 1 cut(s) 972
BisI GCNGC 4 cut(s) 100, 262, 1040, 1331
BlnI CCTAGG 1 cut(s) 629
BlsI GCNGC 4 cut(s) 101, 263, 1041, 1332
Bme1390I CCNGG 4 cut(s) 95, 205, 1112, 1283
BmeT110I CYCGRG 1 cut(s) 1395
BmiI GGNNCC 4 cut(s) 73, 768, 930, 1503
BmrFI CCNGG 4 cut(s) 95, 205, 1112, 1283
BmsI GCATC 2 cut(s) 587, 1449
Bpu14I TTCGAA 1 cut(s) 417
BpuEI CTTGAG 4 cut(s) 97, 434, 487, 1552
BpuMI CCSGG 2 cut(s) 205, 1112
BsaAI YACGTR 1 cut(s) 834
BsaBI GATNNNNATC 2 cut(s) 212, 933
BsaI GGTCTC 1 cut(s) 1285
BsaJI CCNNGG 4 cut(s) 94, 629, 1111, 1239
BsaWI WCCGGW 2 cut(s) 422, 1374
BsaXI ACNNNNNCTCC 2 cut(s) 1016, 1046
Bsc4I CCNNNNNNNGG 1 cut(s) 325
Bse1I ACTGG 2 cut(s) 50, 864
Bse3DI GCAATG 1 cut(s) 1512
Bse8I GATNNNNATC 2 cut(s) 212, 933
BseBI CCWGG 2 cut(s) 95, 1283
BseDI CCNNGG 4 cut(s) 94, 629, 1111, 1239
BseGI GGATG 9 cut(s) 37, 481, 507, 657, 667, 673, 802, 1371, 1421
BseJI GATNNNNATC 2 cut(s) 212, 933
BseLI CCNNNNNNNGG 1 cut(s) 325
BseMI GCAATG 1 cut(s) 1512
BseMII CTCAG 5 cut(s) 273, 582, 729, 744, 747
BseNI ACTGG 2 cut(s) 50, 864
BseRI GAGGAG 2 cut(s) 371, 1037
BseXI GCAGC 2 cut(s) 86, 1317
BsgI GTGCAG 2 cut(s) 85, 856
Bsh1236I CGCG 1 cut(s) 1335
BshFI GGCC 1 cut(s) 318
BsiHKCI CYCGRG 1 cut(s) 1395
BsiSI CCGG 4 cut(s) 204, 423, 1111, 1375
BslFI GGGAC 1 cut(s) 1414
BslI CCNNNNNNNGG 1 cut(s) 325
BsmAI GTCTC 4 cut(s) 404, 734, 1257, 1285
BsmFI GGGAC 1 cut(s) 1414
BsmI GAATGC 1 cut(s) 367
BsnI GGCC 1 cut(s) 318
Bso31I GGTCTC 1 cut(s) 1285
BsoBI CYCGRG 1 cut(s) 1395
Bsp119I TTCGAA 1 cut(s) 417
BspACI CCGC 6 cut(s) 262, 290, 353, 365, 544, 1040
BspANI GGCC 1 cut(s) 318
BspCNI CTCAG 5 cut(s) 274, 583, 730, 743, 748
BspFNI CGCG 1 cut(s) 1335
BspLI GGNNCC 4 cut(s) 73, 768, 930, 1503
BspPI GGATC 6 cut(s) 215, 411, 439, 923, 936, 1347
BspT104I TTCGAA 1 cut(s) 417
BspTNI GGTCTC 1 cut(s) 1285
BsrDI GCAATG 1 cut(s) 1512
BsrI ACTGG 2 cut(s) 50, 864
BssECI CCNNGG 4 cut(s) 94, 629, 1111, 1239
BssT1I CCWWGG 1 cut(s) 629
Bst2UI CCWGG 2 cut(s) 95, 1283
Bst4CI ACNGT 2 cut(s) 1169, 1300
Bst6I CTCTTC 3 cut(s) 490, 507, 874
BstBAI YACGTR 1 cut(s) 834
BstBI TTCGAA 1 cut(s) 417
BstC8I GCNNGC 1 cut(s) 351
BstDEI CTNAG 6 cut(s) 282, 591, 603, 730, 738, 756
BstENI CCTNNNNNAGG 1 cut(s) 323
BstF5I GGATG 9 cut(s) 37, 481, 507, 657, 667, 673, 802, 1371, 1421
BstFNI CGCG 1 cut(s) 1335
BstHHI GCGC 1 cut(s) 1335
BstMAI GTCTC 4 cut(s) 404, 734, 1257, 1285
BstMWI GCNNNNNNNGC 6 cut(s) 57, 225, 234, 270, 346, 1501
BstNI CCWGG 2 cut(s) 95, 1283
BstSCI CCNGG 4 cut(s) 93, 203, 1110, 1281
BstSFI CTRYAG 1 cut(s) 972
BstUI CGCG 1 cut(s) 1335
BstV1I GCAGC 2 cut(s) 86, 1317
BstX2I RGATCY 3 cut(s) 444, 928, 1339
BstXI CCANNNNNNTGG 2 cut(s) 127, 1444
BstYI RGATCY 3 cut(s) 444, 928, 1339
BsuRI GGCC 1 cut(s) 318
BtgZI GCGATG 1 cut(s) 178
BtsCI GGATG 9 cut(s) 37, 481, 507, 657, 667, 673, 802, 1371, 1421
BtsIMutI CAGTG 2 cut(s) 198, 815
Cac8I GCNNGC 1 cut(s) 351
CaiI CAGNNNCTG 1 cut(s) 737
CfoI GCGC 1 cut(s) 1335
CseI GACGC 1 cut(s) 957
CsiI ACCWGGT 1 cut(s) 1281
Csp6I GTAC 1 cut(s) 1420
CspCI CAANNNNNGTGG 2 cut(s) 49, 84
CviAII CATG 2 cut(s) 275, 572
CviQI GTAC 1 cut(s) 1420
DdeI CTNAG 6 cut(s) 282, 591, 603, 730, 738, 756
Eam1104I CTCTTC 3 cut(s) 490, 507, 874
EarI CTCTTC 3 cut(s) 490, 507, 874
Eco130I CCWWGG 1 cut(s) 629
Eco147I AGGCCT 1 cut(s) 318
Eco31I GGTCTC 1 cut(s) 1285
Eco57I CTGAAG 1 cut(s) 507
Eco72I CACGTG 1 cut(s) 834
Eco88I CYCGRG 1 cut(s) 1395
EcoNI CCTNNNNNAGG 1 cut(s) 323
EcoRI GAATTC 1 cut(s) 1367
EcoRII CCWGG 2 cut(s) 93, 1281
EcoT14I CCWWGG 1 cut(s) 629
ErhI CCWWGG 1 cut(s) 629
FaeI CATG 2 cut(s) 278, 575
FalI AAGNNNNNCTT 2 cut(s) 449, 481
FaqI GGGAC 1 cut(s) 1414
FatI CATG 2 cut(s) 274, 571
FbaI TGATCA 1 cut(s) 175
FblI GTMKAC 1 cut(s) 999
Fnu4HI GCNGC 4 cut(s) 100, 262, 1040, 1331
FokI GGATG 9 cut(s) 44, 488, 514, 664, 674, 680, 809, 1358, 1428
Fsp4HI GCNGC 4 cut(s) 100, 262, 1040, 1331
FspBI CTAG 4 cut(s) 630, 942, 981, 1155
GlaI GCGC 1 cut(s) 1334
GluI GCNGC 4 cut(s) 100, 262, 1040, 1331
HaeIII GGCC 1 cut(s) 318
HapII CCGG 4 cut(s) 204, 423, 1111, 1375
HgaI GACGC 1 cut(s) 957
HhaI GCGC 1 cut(s) 1335
Hin1II CATG 2 cut(s) 278, 575
Hin6I GCGC 1 cut(s) 1333
HinP1I GCGC 1 cut(s) 1333
HindIII AAGCTT 1 cut(s) 992
HinfI GANTC 5 cut(s) 278, 587, 734, 752, 1488
HpaII CCGG 4 cut(s) 204, 423, 1111, 1375
HphI GGTGA 6 cut(s) 107, 170, 307, 874, 1118, 1181
Hpy166II GTNNAC 1 cut(s) 1000
Hpy188III TCNNGA 1 cut(s) 407
Hpy8I GTNNAC 1 cut(s) 1000
Hpy99I CGWCG 1 cut(s) 1169
HpyAV CCTTC 4 cut(s) 126, 239, 298, 1002
HpyCH4III ACNGT 2 cut(s) 1169, 1300
HpyCH4IV ACGT 1 cut(s) 833
HpyCH4V TGCA 7 cut(s) 60, 102, 237, 700, 837, 1495, 1517
HpyF10VI GCNNNNNNNGC 6 cut(s) 57, 225, 234, 270, 346, 1501
HpyF3I CTNAG 6 cut(s) 282, 591, 603, 730, 738, 756
HpySE526I ACGT 1 cut(s) 833
Hsp92II CATG 2 cut(s) 278, 575
HspAI GCGC 1 cut(s) 1333
Ksp22I TGATCA 1 cut(s) 175
LmnI GCTCC 6 cut(s) 71, 206, 766, 1011, 1447, 1501
Lsp1109I GCAGC 2 cut(s) 86, 1317
LweI GCATC 2 cut(s) 587, 1449
MabI ACCWGGT 1 cut(s) 1281
MaeI CTAG 4 cut(s) 630, 942, 981, 1155
MaeII ACGT 1 cut(s) 833
MaeIII GTNAC 3 cut(s) 86, 877, 1124
MflI RGATCY 3 cut(s) 444, 928, 1339
MlyI GAGTC 2 cut(s) 272, 1482
MmeI TCCRAC 1 cut(s) 372
MroXI GAANNNNTTC 1 cut(s) 1176
MseI TTAA 4 cut(s) 888, 1379, 1452, 1552
MslI CAYNNNNRTG 1 cut(s) 1167
MspI CCGG 4 cut(s) 204, 423, 1111, 1375
MspR9I CCNGG 4 cut(s) 95, 205, 1112, 1283
Mva1269I GAATGC 1 cut(s) 367
MvaI CCWGG 2 cut(s) 95, 1283
MvnI CGCG 1 cut(s) 1335
MwoI GCNNNNNNNGC 6 cut(s) 57, 225, 234, 270, 346, 1501
NciI CCSGG 2 cut(s) 205, 1112
NlaIII CATG 2 cut(s) 278, 575
NlaIV GGNNCC 4 cut(s) 73, 768, 930, 1503
NmuCI GTSAC 2 cut(s) 86, 1124
NspV TTCGAA 1 cut(s) 417
OliI CACNNNNGTG 1 cut(s) 1167
PaeR7I CTCGAG 1 cut(s) 1395
PceI AGGCCT 1 cut(s) 318
PctI GAATGC 1 cut(s) 367
PdmI GAANNNNTTC 1 cut(s) 1176
PfeI GAWTC 3 cut(s) 587, 734, 752
PfoI TCCNGGA 1 cut(s) 203
PkrI GCNGC 4 cut(s) 101, 263, 1041, 1332
PleI GAGTC 2 cut(s) 272, 1482
PmaCI CACGTG 1 cut(s) 834
PmlI CACGTG 1 cut(s) 834
PpsI GAGTC 2 cut(s) 272, 1482
Ppu21I YACGTR 1 cut(s) 834
Psp6I CCWGG 2 cut(s) 93, 1281
PspCI CACGTG 1 cut(s) 834
PspGI CCWGG 2 cut(s) 93, 1281
PspN4I GGNNCC 4 cut(s) 73, 768, 930, 1503
PspXI VCTCGAGB 1 cut(s) 1395
PstNI CAGNNNCTG 1 cut(s) 737
PsuI RGATCY 3 cut(s) 444, 928, 1339
RsaI GTAC 1 cut(s) 1421
RsaNI GTAC 1 cut(s) 1420
RseI CAYNNNNRTG 1 cut(s) 1167
SaqAI TTAA 4 cut(s) 888, 1379, 1452, 1552
SatI GCNGC 4 cut(s) 100, 262, 1040, 1331
SchI GAGTC 2 cut(s) 272, 1482
ScrFI CCNGG 4 cut(s) 95, 205, 1112, 1283
SexAI ACCWGGT 1 cut(s) 1281
SfaNI GCATC 2 cut(s) 587, 1449
SfcI CTRYAG 1 cut(s) 972
Sfr274I CTCGAG 1 cut(s) 1395
SfuI TTCGAA 1 cut(s) 417
SlaI CTCGAG 1 cut(s) 1395
SmiMI CAYNNNNRTG 1 cut(s) 1167
SmlI CTYRAG 5 cut(s) 76, 449, 466, 1395, 1531
SmoI CTYRAG 5 cut(s) 76, 449, 466, 1395, 1531
SseBI AGGCCT 1 cut(s) 318
SsiI CCGC 6 cut(s) 262, 290, 353, 365, 544, 1040
SspMI CTAG 4 cut(s) 630, 942, 981, 1155
StuI AGGCCT 1 cut(s) 318
StyD4I CCNGG 4 cut(s) 93, 203, 1110, 1281
StyI CCWWGG 1 cut(s) 629
TaaI ACNGT 2 cut(s) 1169, 1300
TaiI ACGT 1 cut(s) 836
TaqI TCGA 2 cut(s) 417, 1396
TauI GCSGC 2 cut(s) 264, 1042
TfiI GAWTC 3 cut(s) 587, 734, 752
Tru1I TTAA 4 cut(s) 888, 1379, 1452, 1552
Tru9I TTAA 4 cut(s) 888, 1379, 1452, 1552
TscAI CASTG 2 cut(s) 198, 822
TseFI GTSAC 2 cut(s) 86, 1124
TseI GCWGC 2 cut(s) 99, 1330
Tsp45I GTSAC 2 cut(s) 86, 1124
TspDTI ATGAA 9 cut(s) 17, 48, 525, 687, 816, 822, 1004, 1360, 1397
TspRI CASTG 2 cut(s) 198, 822
XagI CCTNNNNNAGG 1 cut(s) 323
XapI RAATTY 4 cut(s) 688, 1117, 1176, 1367
XhoI CTCGAG 1 cut(s) 1395
XmaJI CCTAGG 1 cut(s) 629
XmiI GTMKAC 1 cut(s) 999
XmnI GAANNNNTTC 1 cut(s) 1176
XspI CTAG 4 cut(s) 630, 942, 981, 1155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.